Rroxscaffold_4G00298060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000574
Physical Location & Seq
Forward (+)
17923018 .. 17927404
4387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00298060.1

Sequence Viewer

Length: 681 bp
ATGGATGGCAATGTGAGGTTGGGTCATGAGGCATGTGGTGGGCATAAAGAAATCTTGTTGAGCAATGATCTGTGTTGGAAATTCTACCTCAACGTTGTAGTTCCAGCTGTATCTGCTTCTTCATCTTCTTCTTTTACGACTACTGCTTCACCCTCTAACAATCTTGCTTTCATCGTTCCGGTACTCTTAACCTTCGTTCAGATCAAGTTCCCAGGGATCAACATGTGGTCTTCGCTGTTCGAAACGCACCATACAACCACCATGGCCGCCATTGCAAGCTTGCTTCTGTATTGGCTGGCGCTAGAGGCCATGCAGAGATTCCCCGCTTACACTGTCAACTTTCGAGTCGTTAGGACGTTTTCAGGTTTGATCTCAATTGCTTCACTGCTCGCGCTTCTGCTTCCCGACTGTTGGGAGCATGTACCATATTACGTGCTGTTCATGTCATATTGGGTGAGCCGGGGATTTGGGTTTCTACGAATGATGTATGGAAGGGTTTACCGACGAGTTGTGGAGGAACTTCTTCAAAATATATGGTTAATCCATTACTGTCAACGAGTTAGAAGAGCTAGTGGGCTCTCGCCGTCGACGGTTATGGATACACATGATCGCACTTCGATCTGTGGGCTCTTGCCATTGACGGTCATGCATATGCATGATCGCATGTCGTATTATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

226

Amino Acids

25.77

Weight (kDa)

8.85

Isoelectric Point (pI)

57.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 587
AccII CGCG 1 cut(s) 392
AciI CCGC 2 cut(s) 267, 324
AclI AACGTT 1 cut(s) 93
AclWI GGATC 1 cut(s) 224
AcoI YGGCCR 1 cut(s) 264
AcsI RAATTY 1 cut(s) 80
AfaI GTAC 2 cut(s) 183, 423
AfiI CCNNNNNNNGG 1 cut(s) 411
AflIII ACRYGT 1 cut(s) 222
AgsI TTSAA 1 cut(s) 527
AjnI CCWGG 1 cut(s) 211
AluBI AGCT 3 cut(s) 107, 279, 569
AluI AGCT 3 cut(s) 107, 279, 569
AlwI GGATC 1 cut(s) 224
AoxI GGCC 2 cut(s) 264, 306
ApoI RAATTY 1 cut(s) 80
Asp700I GAANNNNTTC 1 cut(s) 522
AspLEI GCGC 2 cut(s) 301, 394
AsuC2I CCSGG 1 cut(s) 461
AsuHPI GGTGA 2 cut(s) 141, 466
AsuII TTCGAA 1 cut(s) 240
BanII GRGCYC 2 cut(s) 579, 630
BbsI GAAGAC 1 cut(s) 222
BceAI ACGGC 1 cut(s) 568
BciT130I CCWGG 1 cut(s) 213
BciVI GTATCC 1 cut(s) 592
BcnI CCSGG 1 cut(s) 461
BfaI CTAG 2 cut(s) 302, 570
BfoI RGCGCY 1 cut(s) 302
BfuI GTATCC 1 cut(s) 592
BisI GCNGC 1 cut(s) 267
BlsI GCNGC 1 cut(s) 268
Bme1390I CCNGG 2 cut(s) 213, 461
BmrFI CCNGG 2 cut(s) 213, 461
BpiI GAAGAC 1 cut(s) 222
Bpu14I TTCGAA 1 cut(s) 240
BpuMI CCSGG 1 cut(s) 461
BsaAI YACGTR 1 cut(s) 433
BsaJI CCNNGG 4 cut(s) 211, 212, 261, 460
BsaWI WCCGGW 1 cut(s) 178
Bsc4I CCNNNNNNNGG 1 cut(s) 411
Bse3DI GCAATG 3 cut(s) 16, 70, 270
BseBI CCWGG 1 cut(s) 213
BseDI CCNNGG 4 cut(s) 211, 212, 261, 460
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 411
BseMI GCAATG 3 cut(s) 16, 70, 270
Bsh1236I CGCG 1 cut(s) 392
BshFI GGCC 2 cut(s) 266, 308
BsiSI CCGG 2 cut(s) 179, 460
BslI CCNNNNNNNGG 1 cut(s) 411
BsnI GGCC 2 cut(s) 266, 308
Bsp119I TTCGAA 1 cut(s) 240
Bsp1286I GDGCHC 2 cut(s) 579, 630
Bsp143I GATC 7 cut(s) 67, 201, 216, 369, 607, 618, 658
Bsp19I CCATGG 1 cut(s) 261
BspACI CCGC 2 cut(s) 267, 324
BspANI GGCC 2 cut(s) 266, 308
BspFNI CGCG 1 cut(s) 392
BspHI TCATGA 1 cut(s) 25
BspPI GGATC 1 cut(s) 224
BspQI GCTCTTC 1 cut(s) 559
BspT104I TTCGAA 1 cut(s) 240
BsrDI GCAATG 3 cut(s) 16, 70, 270
BssECI CCNNGG 4 cut(s) 211, 212, 261, 460
BssMI GATC 7 cut(s) 67, 201, 216, 369, 607, 618, 658
BssT1I CCWWGG 1 cut(s) 261
Bst2UI CCWGG 1 cut(s) 213
Bst4CI ACNGT 5 cut(s) 334, 410, 551, 592, 643
Bst6I CTCTTC 1 cut(s) 559
BstBAI YACGTR 1 cut(s) 433
BstBI TTCGAA 1 cut(s) 240
BstC8I GCNNGC 4 cut(s) 277, 281, 297, 390
BstDSI CCRYGG 1 cut(s) 261
BstF5I GGATG 1 cut(s) 10
BstFNI CGCG 1 cut(s) 392
BstH2I RGCGCY 1 cut(s) 302
BstHHI GCGC 2 cut(s) 301, 394
BstKTI GATC 7 cut(s) 70, 204, 219, 372, 610, 621, 661
BstMBI GATC 7 cut(s) 67, 201, 216, 369, 607, 618, 658
BstMWI GCNNNNNNNGC 3 cut(s) 113, 272, 305
BstNI CCWGG 1 cut(s) 213
BstNSI RCATGY 4 cut(s) 36, 226, 422, 667
BstSCI CCNGG 2 cut(s) 211, 459
BstUI CGCG 1 cut(s) 392
BstV2I GAAGAC 1 cut(s) 222
BsuI GTATCC 1 cut(s) 592
BsuRI GGCC 2 cut(s) 266, 308
BtgI CCRYGG 1 cut(s) 261
BtsCI GGATG 1 cut(s) 10
BtsI GCAGTG 1 cut(s) 383
BtsIMutI CAGTG 2 cut(s) 330, 383
Cac8I GCNNGC 4 cut(s) 277, 281, 297, 390
CciI TCATGA 1 cut(s) 25
CfoI GCGC 2 cut(s) 301, 394
Csp6I GTAC 2 cut(s) 182, 422
CviJI RGCY 9 cut(s) 107, 266, 279, 295, 308, 459, 569, 577, 628
CviKI_1 RGCY 9 cut(s) 107, 266, 279, 295, 308, 459, 569, 577, 628
CviQI GTAC 2 cut(s) 182, 422
DpnI GATC 7 cut(s) 69, 203, 218, 371, 609, 620, 660
DpnII GATC 7 cut(s) 67, 201, 216, 369, 607, 618, 658
EaeI YGGCCR 1 cut(s) 264
Eam1104I CTCTTC 1 cut(s) 559
EarI CTCTTC 1 cut(s) 559
Eco130I CCWWGG 1 cut(s) 261
Eco24I GRGCYC 2 cut(s) 579, 630
EcoRII CCWGG 1 cut(s) 211
EcoT14I CCWWGG 1 cut(s) 261
EcoT22I ATGCAT 2 cut(s) 651, 657
EcoT38I GRGCYC 2 cut(s) 579, 630
ErhI CCWWGG 1 cut(s) 261
FauI CCCGC 1 cut(s) 331
FauNDI CATATG 1 cut(s) 651
FblI GTMKAC 1 cut(s) 587
Fnu4HI GCNGC 1 cut(s) 267
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 2 cut(s) 579, 630
Fsp4HI GCNGC 1 cut(s) 267
FspBI CTAG 2 cut(s) 302, 570
GlaI GCGC 2 cut(s) 300, 393
GluI GCNGC 1 cut(s) 267
HaeII RGCGCY 1 cut(s) 302
HaeIII GGCC 2 cut(s) 266, 308
HapII CCGG 2 cut(s) 179, 460
HhaI GCGC 2 cut(s) 301, 394
Hin6I GCGC 2 cut(s) 299, 392
HinP1I GCGC 2 cut(s) 299, 392
HincII GTYRAC 3 cut(s) 337, 554, 588
HindII GTYRAC 3 cut(s) 337, 554, 588
HindIII AAGCTT 1 cut(s) 277
HinfI GANTC 2 cut(s) 318, 345
HpaII CCGG 2 cut(s) 179, 460
HphI GGTGA 2 cut(s) 141, 466
Hpy166II GTNNAC 4 cut(s) 337, 499, 554, 588
Hpy188I TCNGA 1 cut(s) 201
Hpy188III TCNNGA 2 cut(s) 26, 404
Hpy8I GTNNAC 4 cut(s) 337, 499, 554, 588
Hpy99I CGWCG 3 cut(s) 507, 589, 592
HpyAV CCTTC 2 cut(s) 202, 486
HpyCH4III ACNGT 5 cut(s) 334, 410, 551, 592, 643
HpyCH4IV ACGT 3 cut(s) 93, 356, 432
HpyCH4V TGCA 4 cut(s) 275, 313, 649, 655
HpyF10VI GCNNNNNNNGC 3 cut(s) 113, 272, 305
HpySE526I ACGT 3 cut(s) 93, 356, 432
HspAI GCGC 2 cut(s) 299, 392
Kzo9I GATC 7 cut(s) 67, 201, 216, 369, 607, 618, 658
LguI GCTCTTC 1 cut(s) 559
LmnI GCTCC 1 cut(s) 415
LpnPI CCDG 7 cut(s) 117, 192, 198, 225, 281, 348, 473
MaeI CTAG 2 cut(s) 302, 570
MaeII ACGT 3 cut(s) 93, 356, 432
MalI GATC 7 cut(s) 69, 203, 218, 371, 609, 620, 660
MboI GATC 7 cut(s) 67, 201, 216, 369, 607, 618, 658
MboII GAAGA 6 cut(s) 111, 117, 120, 222, 515, 576
MfeI CAATTG 1 cut(s) 375
MhlI GDGCHC 2 cut(s) 579, 630
MluCI AATT 2 cut(s) 80, 375
MlyI GAGTC 1 cut(s) 354
MmeI TCCRAC 1 cut(s) 56
MnlI CCTC 6 cut(s) 9, 22, 98, 163, 298, 508
Mph1103I ATGCAT 2 cut(s) 651, 657
MroXI GAANNNNTTC 1 cut(s) 522
MseI TTAA 2 cut(s) 188, 539
MslI CAYNNNNRTG 2 cut(s) 650, 654
MspA1I CMGCKG 1 cut(s) 107
MspI CCGG 2 cut(s) 179, 460
MspR9I CCNGG 2 cut(s) 213, 461
MunI CAATTG 1 cut(s) 375
MvaI CCWGG 1 cut(s) 213
MvnI CGCG 1 cut(s) 392
MwoI GCNNNNNNNGC 3 cut(s) 113, 272, 305
NciI CCSGG 1 cut(s) 461
NcoI CCATGG 1 cut(s) 261
NdeI CATATG 1 cut(s) 651
NdeII GATC 7 cut(s) 67, 201, 216, 369, 607, 618, 658
NsiI ATGCAT 2 cut(s) 651, 657
NspI RCATGY 4 cut(s) 36, 226, 422, 667
NspV TTCGAA 1 cut(s) 240
PagI TCATGA 1 cut(s) 25
PasI CCCWGGG 1 cut(s) 212
PciI ACATGT 1 cut(s) 222
PciSI GCTCTTC 1 cut(s) 559
PdmI GAANNNNTTC 1 cut(s) 522
PfeI GAWTC 1 cut(s) 318
PkrI GCNGC 1 cut(s) 268
PleI GAGTC 1 cut(s) 353
PpsI GAGTC 1 cut(s) 353
Ppu21I YACGTR 1 cut(s) 433
PscI ACATGT 1 cut(s) 222
Psp1406I AACGTT 1 cut(s) 93
Psp6I CCWGG 1 cut(s) 211
PspGI CCWGG 1 cut(s) 211
PvuII CAGCTG 1 cut(s) 107
RsaI GTAC 2 cut(s) 183, 423
RsaNI GTAC 2 cut(s) 182, 422
RseI CAYNNNNRTG 2 cut(s) 650, 654
SalI GTCGAC 1 cut(s) 586
SapI GCTCTTC 1 cut(s) 559
SaqAI TTAA 2 cut(s) 188, 539
SatI GCNGC 1 cut(s) 267
Sau3AI GATC 7 cut(s) 67, 201, 216, 369, 607, 618, 658
SchI GAGTC 1 cut(s) 354
ScrFI CCNGG 2 cut(s) 213, 461
SduI GDGCHC 2 cut(s) 579, 630
SfuI TTCGAA 1 cut(s) 240
SgrDI CGTCGACG 1 cut(s) 586
SmiMI CAYNNNNRTG 2 cut(s) 650, 654
Sse9I AATT 2 cut(s) 80, 375
SsiI CCGC 2 cut(s) 267, 324
SspMI CTAG 2 cut(s) 302, 570
StyD4I CCNGG 2 cut(s) 211, 459
StyI CCWWGG 1 cut(s) 261
TaaI ACNGT 5 cut(s) 334, 410, 551, 592, 643
TaiI ACGT 3 cut(s) 96, 359, 435
TaqI TCGA 4 cut(s) 240, 343, 587, 617
TasI AATT 2 cut(s) 80, 375
TauI GCSGC 1 cut(s) 269
TfiI GAWTC 1 cut(s) 318
Tru1I TTAA 2 cut(s) 188, 539
Tru9I TTAA 2 cut(s) 188, 539
TscAI CASTG 2 cut(s) 337, 390
TspDTI ATGAA 3 cut(s) 111, 160, 430
TspRI CASTG 2 cut(s) 337, 390
XapI RAATTY 1 cut(s) 80
XceI RCATGY 4 cut(s) 36, 226, 422, 667
XmiI GTMKAC 1 cut(s) 587
XmnI GAANNNNTTC 1 cut(s) 522
XspI CTAG 2 cut(s) 302, 570
Zsp2I ATGCAT 2 cut(s) 651, 657
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.