Rh2AG144600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000574
Physical Location & Seq
Forward (+)
13212468 .. 13213099
632 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG144600.1

Sequence Viewer

Length: 624 bp
ATGGCCGATTTTCCGTATCAAGTGCAACCCTCAGTCTCACCACGTGAACGTTATAATATCTTCTTCTTTAACCTTGTTCTAGTAGATTTCGCAAGACAAGTTGTCCCTTCCACCTTCGCCATTTTAACTTTCATAGTGCCAATACTTCTCACCTTCATCCAGATCAAATTCCCGGCTGCCGGAATACTGTCTTCTCCATTTGAAACCCAGCATACAAAGTTCATGGTTGCCATGCTCAGCTTACTCGGGTTCTCTGGCTTCGCCATTGGGGCCACCCAAAACTACTTCCCAACTCACGCCGGAAAACTTCGCATGGCTATGAAGTTCACGGCTTCTATCTCAGTGGCTTCACTGGTTTCTATATTGCTTCCGCAGCCTTGGGACCACGTGCCGTACATGATGTACGTCTTCTATTTGATAGGCCACGGTCTCGGTTTAGTACGAAATATATGTCTGGCTTATTACCAGCACGTTGCCAATGGATTTGTGCATGGCTTACGTGCGCGGCAACAGCGGTTGAGAAGAACGAGCCCACCGTTGCCGGTGACACTCAGTGGGCTTAATATCTCCAACCACCCAATTGCTAACCATGGATCGATTACGATAGTCAGAACCCTCCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

207

Amino Acids

23.21

Weight (kDa)

10.43

Isoelectric Point (pI)

52.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 54
AccII CGCG 1 cut(s) 505
AciI CCGC 4 cut(s) 371, 505, 514, 619
AclI AACGTT 1 cut(s) 49
AclWI GGATC 1 cut(s) 601
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 167
AcvI CACGTG 2 cut(s) 44, 388
AdeI CACNNNGTG 2 cut(s) 44, 554
AfaI GTAC 3 cut(s) 395, 404, 441
AfiI CCNNNNNNNGG 1 cut(s) 179
AgsI TTSAA 1 cut(s) 203
AhdI GACNNNNNGTC 1 cut(s) 101
AluBI AGCT 1 cut(s) 240
AluI AGCT 1 cut(s) 240
Alw26I GTCTC 2 cut(s) 40, 434
AlwI GGATC 1 cut(s) 601
Ama87I CYCGRG 1 cut(s) 245
AoxI GGCC 3 cut(s) 3, 270, 421
ApeKI GCWGC 2 cut(s) 176, 373
ApoI RAATTY 1 cut(s) 167
ArsI GACNNNNNNTTYG 2 cut(s) 436, 468
AspLEI GCGC 1 cut(s) 505
AspS9I GGNCC 2 cut(s) 270, 382
AsuC2I CCSGG 1 cut(s) 173
AsuHPI GGTGA 3 cut(s) 30, 142, 556
AvaI CYCGRG 1 cut(s) 245
AvaII GGWCC 1 cut(s) 382
BanII GRGCYC 1 cut(s) 533
BbrPI CACGTG 2 cut(s) 44, 388
BbsI GAAGAC 2 cut(s) 183, 400
BbvI GCAGC 2 cut(s) 163, 385
BceAI ACGGC 2 cut(s) 345, 376
BcnI CCSGG 1 cut(s) 173
BcoDI GTCTC 2 cut(s) 40, 434
BfaI CTAG 2 cut(s) 80, 622
BglI GCCNNNNNGGC 1 cut(s) 269
BisI GCNGC 3 cut(s) 177, 374, 506
BlpI GCTNAGC 1 cut(s) 236
BlsI GCNGC 3 cut(s) 178, 375, 507
Bme1390I CCNGG 1 cut(s) 173
Bme18I GGWCC 1 cut(s) 382
BmeRI GACNNNNNGTC 1 cut(s) 101
BmeT110I CYCGRG 1 cut(s) 245
BmgT120I GGNCC 2 cut(s) 270, 382
BmiI GGNNCC 2 cut(s) 271, 383
BmrFI CCNGG 1 cut(s) 173
BpiI GAAGAC 2 cut(s) 183, 400
Bpu1102I GCTNAGC 1 cut(s) 236
BpuMI CCSGG 1 cut(s) 173
Bsa29I ATCGAT 1 cut(s) 596
BsaAI YACGTR 3 cut(s) 44, 388, 500
BsaI GGTCTC 1 cut(s) 434
BsaJI CCNNGG 3 cut(s) 377, 424, 589
Bsc4I CCNNNNNNNGG 1 cut(s) 179
Bse118I RCCGGY 1 cut(s) 541
Bse1I ACTGG 1 cut(s) 357
BseCI ATCGAT 1 cut(s) 596
BseDI CCNNGG 3 cut(s) 377, 424, 589
BseGI GGATG 1 cut(s) 156
BseLI CCNNNNNNNGG 1 cut(s) 179
BseMII CTCAG 4 cut(s) 45, 250, 354, 565
BseNI ACTGG 1 cut(s) 357
BseXI GCAGC 2 cut(s) 163, 385
BseYI CCCAGC 1 cut(s) 207
Bsh1236I CGCG 1 cut(s) 505
BshFI GGCC 3 cut(s) 5, 272, 423
BshVI ATCGAT 1 cut(s) 596
BsiHKCI CYCGRG 1 cut(s) 245
BsiSI CCGG 4 cut(s) 173, 180, 300, 542
BslFI GGGAC 2 cut(s) 89, 395
BslI CCNNNNNNNGG 1 cut(s) 179
BsmAI GTCTC 2 cut(s) 40, 434
BsmFI GGGAC 2 cut(s) 89, 395
BsnI GGCC 3 cut(s) 5, 272, 423
Bso31I GGTCTC 1 cut(s) 434
BsoBI CYCGRG 1 cut(s) 245
Bsp1286I GDGCHC 1 cut(s) 533
Bsp143I GATC 2 cut(s) 162, 593
Bsp1720I GCTNAGC 1 cut(s) 236
Bsp19I CCATGG 1 cut(s) 589
BspACI CCGC 4 cut(s) 371, 505, 514, 619
BspANI GGCC 3 cut(s) 5, 272, 423
BspCNI CTCAG 4 cut(s) 44, 249, 353, 564
BspDI ATCGAT 1 cut(s) 596
BspFNI CGCG 1 cut(s) 505
BspLI GGNNCC 2 cut(s) 271, 383
BspPI GGATC 1 cut(s) 601
BspTNI GGTCTC 1 cut(s) 434
BsrFI RCCGGY 1 cut(s) 541
BsrI ACTGG 1 cut(s) 357
BssAI RCCGGY 1 cut(s) 541
BssECI CCNNGG 3 cut(s) 377, 424, 589
BssMI GATC 2 cut(s) 162, 593
BssT1I CCWWGG 2 cut(s) 377, 589
Bst4CI ACNGT 3 cut(s) 189, 428, 537
BstBAI YACGTR 3 cut(s) 44, 388, 500
BstDEI CTNAG 4 cut(s) 31, 236, 340, 551
BstDSI CCRYGG 2 cut(s) 424, 589
BstF5I GGATG 1 cut(s) 156
BstFNI CGCG 1 cut(s) 505
BstHHI GCGC 1 cut(s) 505
BstKTI GATC 2 cut(s) 165, 596
BstMAI GTCTC 2 cut(s) 40, 434
BstMBI GATC 2 cut(s) 162, 593
BstMWI GCNNNNNNNGC 3 cut(s) 269, 373, 511
BstSCI CCNGG 1 cut(s) 171
BstUI CGCG 1 cut(s) 505
BstV1I GCAGC 2 cut(s) 163, 385
BstV2I GAAGAC 2 cut(s) 183, 400
Bsu15I ATCGAT 1 cut(s) 596
BsuRI GGCC 3 cut(s) 5, 272, 423
BsuTUI ATCGAT 1 cut(s) 596
BtgI CCRYGG 2 cut(s) 424, 589
BtsCI GGATG 1 cut(s) 156
BtsIMutI CAGTG 3 cut(s) 348, 350, 559
CfoI GCGC 1 cut(s) 505
Cfr10I RCCGGY 1 cut(s) 541
Cfr13I GGNCC 2 cut(s) 270, 382
ClaI ATCGAT 1 cut(s) 596
Csp6I GTAC 3 cut(s) 394, 403, 440
CviAII CATG 6 cut(s) 223, 232, 313, 397, 491, 590
CviQI GTAC 3 cut(s) 394, 403, 440
DdeI CTNAG 4 cut(s) 31, 236, 340, 551
DpnI GATC 2 cut(s) 164, 595
DpnII GATC 2 cut(s) 162, 593
DraIII CACNNNGTG 2 cut(s) 44, 554
DriI GACNNNNNGTC 1 cut(s) 101
EaeI YGGCCR 1 cut(s) 3
Eam1105I GACNNNNNGTC 1 cut(s) 101
Eco130I CCWWGG 2 cut(s) 377, 589
Eco24I GRGCYC 1 cut(s) 533
Eco31I GGTCTC 1 cut(s) 434
Eco47I GGWCC 1 cut(s) 382
Eco72I CACGTG 2 cut(s) 44, 388
Eco88I CYCGRG 1 cut(s) 245
EcoT14I CCWWGG 2 cut(s) 377, 589
EcoT38I GRGCYC 1 cut(s) 533
ErhI CCWWGG 2 cut(s) 377, 589
FaeI CATG 6 cut(s) 226, 235, 316, 400, 494, 593
FaqI GGGAC 2 cut(s) 89, 395
FatI CATG 6 cut(s) 222, 231, 312, 396, 490, 589
Fnu4HI GCNGC 3 cut(s) 177, 374, 506
FokI GGATG 1 cut(s) 143
FriOI GRGCYC 1 cut(s) 533
Fsp4HI GCNGC 3 cut(s) 177, 374, 506
FspBI CTAG 2 cut(s) 80, 622
GlaI GCGC 1 cut(s) 504
GluI GCNGC 3 cut(s) 177, 374, 506
GsaI CCCAGC 1 cut(s) 211
HaeIII GGCC 3 cut(s) 5, 272, 423
HapII CCGG 4 cut(s) 173, 180, 300, 542
HhaI GCGC 1 cut(s) 505
Hin1II CATG 6 cut(s) 226, 235, 316, 400, 494, 593
Hin6I GCGC 1 cut(s) 503
HinP1I GCGC 1 cut(s) 503
HpaII CCGG 4 cut(s) 173, 180, 300, 542
HphI GGTGA 3 cut(s) 30, 142, 556
Hpy166II GTNNAC 2 cut(s) 47, 327
Hpy188I TCNGA 1 cut(s) 611
Hpy188III TCNNGA 1 cut(s) 160
Hpy8I GTNNAC 2 cut(s) 47, 327
HpyAV CCTTC 3 cut(s) 117, 124, 163
HpyCH4III ACNGT 3 cut(s) 189, 428, 537
HpyCH4IV ACGT 6 cut(s) 43, 49, 387, 405, 471, 499
HpyCH4V TGCA 2 cut(s) 25, 490
HpyF10VI GCNNNNNNNGC 3 cut(s) 269, 373, 511
HpyF3I CTNAG 4 cut(s) 31, 236, 340, 551
HpySE526I ACGT 6 cut(s) 43, 49, 387, 405, 471, 499
Hsp92II CATG 6 cut(s) 226, 235, 316, 400, 494, 593
HspAI GCGC 1 cut(s) 503
Kzo9I GATC 2 cut(s) 162, 593
Lsp1109I GCAGC 2 cut(s) 163, 385
MaeI CTAG 2 cut(s) 80, 622
MaeII ACGT 6 cut(s) 43, 49, 387, 405, 471, 499
MaeIII GTNAC 1 cut(s) 544
MalI GATC 2 cut(s) 164, 595
MboI GATC 2 cut(s) 162, 593
MboII GAAGA 5 cut(s) 52, 55, 183, 400, 534
MfeI CAATTG 1 cut(s) 579
MhlI GDGCHC 1 cut(s) 533
MluCI AATT 2 cut(s) 167, 579
MmeI TCCRAC 1 cut(s) 594
MnlI CCTC 1 cut(s) 40
MseI TTAA 3 cut(s) 69, 125, 561
MslI CAYNNNNRTG 1 cut(s) 317
MspA1I CMGCKG 1 cut(s) 514
MspI CCGG 4 cut(s) 173, 180, 300, 542
MspR9I CCNGG 1 cut(s) 173
MunI CAATTG 1 cut(s) 579
MvnI CGCG 1 cut(s) 505
MwoI GCNNNNNNNGC 3 cut(s) 269, 373, 511
NciI CCSGG 1 cut(s) 173
NcoI CCATGG 1 cut(s) 589
NdeII GATC 2 cut(s) 162, 593
NlaIII CATG 6 cut(s) 226, 235, 316, 400, 494, 593
NlaIV GGNNCC 2 cut(s) 271, 383
NmuCI GTSAC 1 cut(s) 544
PcsI WCGNNNNNNNCGW 1 cut(s) 533
PkrI GCNGC 3 cut(s) 178, 375, 507
PmaCI CACGTG 2 cut(s) 44, 388
PmlI CACGTG 2 cut(s) 44, 388
Ppu21I YACGTR 3 cut(s) 44, 388, 500
PsiI TTATAA 1 cut(s) 54
Psp1406I AACGTT 1 cut(s) 49
PspCI CACGTG 2 cut(s) 44, 388
PspFI CCCAGC 1 cut(s) 207
PspN4I GGNNCC 2 cut(s) 271, 383
PspPI GGNCC 2 cut(s) 270, 382
RsaI GTAC 3 cut(s) 395, 404, 441
RsaNI GTAC 3 cut(s) 394, 403, 440
RseI CAYNNNNRTG 1 cut(s) 317
SaqAI TTAA 3 cut(s) 69, 125, 561
SatI GCNGC 3 cut(s) 177, 374, 506
Sau3AI GATC 2 cut(s) 162, 593
Sau96I GGNCC 2 cut(s) 270, 382
ScrFI CCNGG 1 cut(s) 173
SduI GDGCHC 1 cut(s) 533
SinI GGWCC 1 cut(s) 382
SmiMI CAYNNNNRTG 1 cut(s) 317
Sse9I AATT 2 cut(s) 167, 579
SsiI CCGC 4 cut(s) 371, 505, 514, 619
SspMI CTAG 2 cut(s) 80, 622
StyD4I CCNGG 1 cut(s) 171
StyI CCWWGG 2 cut(s) 377, 589
TaaI ACNGT 3 cut(s) 189, 428, 537
TaiI ACGT 6 cut(s) 46, 52, 390, 408, 474, 502
TaqI TCGA 1 cut(s) 596
TasI AATT 2 cut(s) 167, 579
TauI GCSGC 1 cut(s) 508
Tru1I TTAA 3 cut(s) 69, 125, 561
Tru9I TTAA 3 cut(s) 69, 125, 561
TscAI CASTG 3 cut(s) 348, 357, 559
TseFI GTSAC 1 cut(s) 544
TseI GCWGC 2 cut(s) 176, 373
Tsp45I GTSAC 1 cut(s) 544
TspDTI ATGAA 4 cut(s) 121, 145, 211, 335
TspRI CASTG 3 cut(s) 348, 357, 559
VpaK11BI GGWCC 1 cut(s) 382
XapI RAATTY 1 cut(s) 167
XspI CTAG 2 cut(s) 80, 622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.