Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000574

Physical Location & Seq

Genomic Coordinates Reverse (-)

52326641 .. 52344243

Gene Structure 17603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG258600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGCCGCCATTGCAAGCTTGCTTCTGTATTGGCTGGCGCTAGAGGCCATGCAGAGATTCCCCGCTTACACTGTCAACTTTCGAGTCGTTAGGACGTTTTCAGGTTTGATCTCAATTGCTTCACTGCTCGCGCTTCTGCTTCCCGACTGTTGGGAGCATGTACCATATTTCGTGTTGTTCATGTCATATTGGGTGAGCCGGGGGTATGGGTTTCTACGAATGATGTATGGAAGGGTTTACCGACGAGTTGTGGAGGAACTTCTTCAAAATATATGGTTAATCCATTACTGTCAACGAGTCAGAAGAGCTAGTGGGCTCTCCCCGTCGACGGTTATGGACACACATGATCACACTTCGATCTTTGGGCTCTTGCCATTGACGGTCATGGACATGCATGATCGCATGTCTTTAACCCCAAAATCCAATCAAGGTCGGGCCTTTATCATCCGTCCAAATTGTGCATTTGATGAGATTATTGCCCAAAGCTCCGACTCTGTTCTGGGAAAATCATCTCTAAAACCTTGTGCACTAGGTAGCACATCTGCTCAAAGAGGTAGGCCATTTCCTCTTGCATGTATCAACGCATATACAGCTTTGGAAGAGATCCAATTTATTACTTTGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

208

Amino Acids

23.65

Weight (kDa)

8.88

Isoelectric Point (pI)

47.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000574)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13031 FvH4_3g38201 FvH4_7g11471 FvH4_7g15661
malus_domestica	MD02G1210800.v1.1 MD07G1115400.v1.1
prunus_persica	Prupe.2G076600_v2.0.a1 Prupe.2G137400_v2.0.a1 Prupe.2G142700_v2.0.a1 Prupe.2G143000_v2.0.a1 Prupe.2G143100_v2.0.a1 Prupe.2G179900_v2.0.a1 Prupe.2G180000_v2.0.a1 Prupe.2G180100_v2.0.a1 Prupe.2G180200_v2.0.a1 Prupe.2G180300_v2.0.a1
pyrus_communis	pycom07g10060
rosa_laevigata	RLG00000000617 RLG00000002126 RLG00000002129 RLG00000002130 RLG00000014963 RLG00000014966 RLG00000017055 RLG00000017058 RLG00000017061 RLG00000028520 RLG00000028521 RLG00000029984 RLG00000035987 RLG00000035999 RLG00000036002
rosa_roxburghii	Rroxscaffold_1G00012110 Rroxscaffold_1G00012170 Rroxscaffold_3G00219560 Rroxscaffold_4G00298060 Rroxscaffold_4G00298110 Rroxscaffold_4G00298120 Rroxscaffold_4G00305310 Rroxscaffold_7G00211490
rosa_rugosa	Rorug01G0206500 Rorug01G0261300 Rorug01G0261400 Rorug05G0392600 Rorug07G0339600 Rorug07G0339700
rosa_samantha	Rh1AG223300 Rh1AG223400 Rh1AG275200 Rh1AG275300 Rh1BG189500 Rh1BG189600 Rh1BG190900 Rh1BG242100 Rh1CG258200 Rh1CG258500 Rh1CG258600 Rh1DG218300 Rh1DG218400 Rh1DG270900 Rh1DG271000 Rh2AG144400 Rh2AG144600 Rh2AG145000 Rh2BG149400 Rh2BG149700 Rh2BG150000 Rh2BG150100 Rh2BG150300 Rh2CG150700 Rh2CG150900 Rh2DG149900 Rh2DG150100 Rh2DG150400 Rh5DG481400 Rh6AG063300 Rh6BG056400 Rh6BG056600 Rh6BG057000 Rh6CG056500 Rh7AG494100 Rh7AG494200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	326
AccII	CGCG	1 cut(s)	131
AciI	CCGC	2 cut(s)	6, 63
AclWI	GGATC	1 cut(s)	598
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	162
AfiI	CCNNNNNNNGG	2 cut(s)	150, 328
AgsI	TTSAA	1 cut(s)	266
AluBI	AGCT	4 cut(s)	18, 308, 486, 593
AluI	AGCT	4 cut(s)	18, 308, 486, 593
Alw21I	GWGCWC	1 cut(s)	529
Alw44I	GTGCAC	1 cut(s)	525
AlwI	GGATC	1 cut(s)	598
AoxI	GGCC	4 cut(s)	3, 45, 435, 557
ApaLI	GTGCAC	1 cut(s)	525
Asp700I	GAANNNNTTC	1 cut(s)	261
AspLEI	GCGC	2 cut(s)	40, 133
AspS9I	GGNCC	1 cut(s)	435
AsuC2I	CCSGG	1 cut(s)	200
AsuHPI	GGTGA	1 cut(s)	205
BaeGI	GKGCMC	1 cut(s)	529
BanII	GRGCYC	2 cut(s)	318, 369
Bbv12I	GWGCWC	1 cut(s)	529
BclI	TGATCA	1 cut(s)	346
BcnI	CCSGG	1 cut(s)	200
BfaI	CTAG	3 cut(s)	41, 309, 530
BfoI	RGCGCY	1 cut(s)	41
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	1 cut(s)	200
BmgT120I	GGNCC	1 cut(s)	435
BmrFI	CCNGG	1 cut(s)	200
BpuMI	CCSGG	1 cut(s)	200
BsaJI	CCNNGG	1 cut(s)	199
Bsc4I	CCNNNNNNNGG	2 cut(s)	150, 328
Bse3DI	GCAATG	1 cut(s)	9
BseDI	CCNNGG	1 cut(s)	199
BseGI	GGATG	1 cut(s)	444
BseLI	CCNNNNNNNGG	2 cut(s)	150, 328
BseMI	GCAATG	1 cut(s)	9
BseSI	GKGCMC	1 cut(s)	529
Bsh1236I	CGCG	1 cut(s)	131
BshFI	GGCC	4 cut(s)	5, 47, 437, 559
BsiHKAI	GWGCWC	1 cut(s)	529
BsiSI	CCGG	1 cut(s)	199
BslI	CCNNNNNNNGG	2 cut(s)	150, 328
BsnI	GGCC	4 cut(s)	5, 47, 437, 559
Bsp1286I	GDGCHC	3 cut(s)	318, 369, 529
Bsp143I	GATC	5 cut(s)	108, 346, 357, 397, 603
BspACI	CCGC	2 cut(s)	6, 63
BspANI	GGCC	4 cut(s)	5, 47, 437, 559
BspFNI	CGCG	1 cut(s)	131
BspPI	GGATC	1 cut(s)	598
BspQI	GCTCTTC	1 cut(s)	298
BsrDI	GCAATG	1 cut(s)	9
BssECI	CCNNGG	1 cut(s)	199
BssMI	GATC	5 cut(s)	108, 346, 357, 397, 603
Bst4CI	ACNGT	5 cut(s)	73, 149, 290, 331, 382
Bst6I	CTCTTC	2 cut(s)	298, 594
BstC8I	GCNNGC	4 cut(s)	16, 20, 36, 129
BstF5I	GGATG	1 cut(s)	444
BstFNI	CGCG	1 cut(s)	131
BstH2I	RGCGCY	1 cut(s)	41
BstHHI	GCGC	2 cut(s)	40, 133
BstKTI	GATC	5 cut(s)	111, 349, 360, 400, 606
BstMBI	GATC	5 cut(s)	108, 346, 357, 397, 603
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 44, 590
BstNSI	RCATGY	4 cut(s)	161, 394, 406, 576
BstSCI	CCNGG	1 cut(s)	198
BstSLI	GKGCMC	1 cut(s)	529
BstUI	CGCG	1 cut(s)	131
BstX2I	RGATCY	1 cut(s)	603
BstYI	RGATCY	1 cut(s)	603
BsuRI	GGCC	4 cut(s)	5, 47, 437, 559
BtsCI	GGATG	1 cut(s)	444
BtsI	GCAGTG	1 cut(s)	122
BtsIMutI	CAGTG	2 cut(s)	69, 122
Cac8I	GCNNGC	4 cut(s)	16, 20, 36, 129
CfoI	GCGC	2 cut(s)	40, 133
Cfr13I	GGNCC	1 cut(s)	435
Csp6I	GTAC	1 cut(s)	161
CviAII	CATG	9 cut(s)	49, 158, 181, 344, 385, 391, 395, 403, 573
CviQI	GTAC	1 cut(s)	161
DpnI	GATC	5 cut(s)	110, 348, 359, 399, 605
DpnII	GATC	5 cut(s)	108, 346, 357, 397, 603
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	298, 594
EarI	CTCTTC	2 cut(s)	298, 594
Eco24I	GRGCYC	2 cut(s)	318, 369
EcoT22I	ATGCAT	1 cut(s)	396
EcoT38I	GRGCYC	2 cut(s)	318, 369
FaeI	CATG	9 cut(s)	52, 161, 184, 347, 388, 394, 398, 406, 576
FatI	CATG	9 cut(s)	48, 157, 180, 343, 384, 390, 394, 402, 572
FauI	CCCGC	1 cut(s)	70
FbaI	TGATCA	1 cut(s)	346
FblI	GTMKAC	1 cut(s)	326
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	1 cut(s)	431
FriOI	GRGCYC	2 cut(s)	318, 369
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	3 cut(s)	41, 309, 530
GlaI	GCGC	2 cut(s)	39, 132
GluI	GCNGC	1 cut(s)	6
HaeII	RGCGCY	1 cut(s)	41
HaeIII	GGCC	4 cut(s)	5, 47, 437, 559
HapII	CCGG	1 cut(s)	199
HhaI	GCGC	2 cut(s)	40, 133
Hin1II	CATG	9 cut(s)	52, 161, 184, 347, 388, 394, 398, 406, 576
Hin6I	GCGC	2 cut(s)	38, 131
HinP1I	GCGC	2 cut(s)	38, 131
HincII	GTYRAC	3 cut(s)	76, 293, 327
HindII	GTYRAC	3 cut(s)	76, 293, 327
HindIII	AAGCTT	1 cut(s)	16
HinfI	GANTC	4 cut(s)	57, 84, 297, 491
HpaII	CCGG	1 cut(s)	199
HphI	GGTGA	1 cut(s)	205
Hpy166II	GTNNAC	5 cut(s)	76, 238, 293, 327, 527
Hpy188I	TCNGA	2 cut(s)	302, 490
Hpy188III	TCNNGA	1 cut(s)	143
Hpy8I	GTNNAC	5 cut(s)	76, 238, 293, 327, 527
Hpy99I	CGWCG	3 cut(s)	246, 328, 331
HpyAV	CCTTC	1 cut(s)	225
HpyCH4III	ACNGT	5 cut(s)	73, 149, 290, 331, 382
HpyCH4IV	ACGT	1 cut(s)	95
HpyCH4V	TGCA	6 cut(s)	14, 52, 394, 461, 527, 572
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 44, 590
HpySE526I	ACGT	1 cut(s)	95
Hsp92II	CATG	9 cut(s)	52, 161, 184, 347, 388, 394, 398, 406, 576
HspAI	GCGC	2 cut(s)	38, 131
Ksp22I	TGATCA	1 cut(s)	346
Kzo9I	GATC	5 cut(s)	108, 346, 357, 397, 603
LguI	GCTCTTC	1 cut(s)	298
LmnI	GCTCC	2 cut(s)	154, 491
LpnPI	CCDG	4 cut(s)	20, 87, 212, 485
MaeI	CTAG	3 cut(s)	41, 309, 530
MaeII	ACGT	1 cut(s)	95
MalI	GATC	5 cut(s)	110, 348, 359, 399, 605
MboI	GATC	5 cut(s)	108, 346, 357, 397, 603
MboII	GAAGA	3 cut(s)	254, 315, 611
MfeI	CAATTG	1 cut(s)	114
MflI	RGATCY	1 cut(s)	603
MhlI	GDGCHC	3 cut(s)	318, 369, 529
MluCI	AATT	3 cut(s)	114, 454, 608
MlyI	GAGTC	3 cut(s)	93, 306, 485
MmeI	TCCRAC	1 cut(s)	513
MnlI	CCTC	4 cut(s)	37, 247, 545, 576
Mph1103I	ATGCAT	1 cut(s)	396
MroXI	GAANNNNTTC	1 cut(s)	261
MseI	TTAA	2 cut(s)	278, 410
MslI	CAYNNNNRTG	1 cut(s)	389
MspI	CCGG	1 cut(s)	199
MspR9I	CCNGG	1 cut(s)	200
MunI	CAATTG	1 cut(s)	114
MvnI	CGCG	1 cut(s)	131
MwoI	GCNNNNNNNGC	3 cut(s)	11, 44, 590
NciI	CCSGG	1 cut(s)	200
NdeII	GATC	5 cut(s)	108, 346, 357, 397, 603
NlaIII	CATG	9 cut(s)	52, 161, 184, 347, 388, 394, 398, 406, 576
NsiI	ATGCAT	1 cut(s)	396
NspI	RCATGY	4 cut(s)	161, 394, 406, 576
PciSI	GCTCTTC	1 cut(s)	298
PdmI	GAANNNNTTC	1 cut(s)	261
PfeI	GAWTC	1 cut(s)	57
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	3 cut(s)	92, 305, 485
PpsI	GAGTC	3 cut(s)	92, 305, 485
PspPI	GGNCC	1 cut(s)	435
PsuI	RGATCY	1 cut(s)	603
RsaI	GTAC	1 cut(s)	162
RsaNI	GTAC	1 cut(s)	161
RseI	CAYNNNNRTG	1 cut(s)	389
SalI	GTCGAC	1 cut(s)	325
SapI	GCTCTTC	1 cut(s)	298
SaqAI	TTAA	2 cut(s)	278, 410
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	5 cut(s)	108, 346, 357, 397, 603
Sau96I	GGNCC	1 cut(s)	435
SchI	GAGTC	3 cut(s)	93, 306, 485
ScrFI	CCNGG	1 cut(s)	200
SduI	GDGCHC	3 cut(s)	318, 369, 529
SgrDI	CGTCGACG	1 cut(s)	325
SmiMI	CAYNNNNRTG	1 cut(s)	389
Sse9I	AATT	3 cut(s)	114, 454, 608
SsiI	CCGC	2 cut(s)	6, 63
SspMI	CTAG	3 cut(s)	41, 309, 530
StyD4I	CCNGG	1 cut(s)	198
TaaI	ACNGT	5 cut(s)	73, 149, 290, 331, 382
TaiI	ACGT	1 cut(s)	98
TaqI	TCGA	3 cut(s)	82, 326, 356
TasI	AATT	3 cut(s)	114, 454, 608
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	57
Tru1I	TTAA	2 cut(s)	278, 410
Tru9I	TTAA	2 cut(s)	278, 410
TscAI	CASTG	2 cut(s)	76, 129
TspDTI	ATGAA	1 cut(s)	169
TspGWI	ACGGA	1 cut(s)	437
TspRI	CASTG	2 cut(s)	76, 129
VneI	GTGCAC	1 cut(s)	525
XceI	RCATGY	4 cut(s)	161, 394, 406, 576
XmiI	GTMKAC	1 cut(s)	326
XmnI	GAANNNNTTC	1 cut(s)	261
XspI	CTAG	3 cut(s)	41, 309, 530
Zsp2I	ATGCAT	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.