Rh1BG189500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000574
Physical Location & Seq
Reverse (-)
30417160 .. 30417717
558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG189500.1

Sequence Viewer

Length: 558 bp
ATGCAGAGCCAAAATCCAATCAATCATGTAATCAACCTGTACTTCACCAATAACAATATTAGTTTGCGGCAGTTTCTGAGCCGATCCTCAACCTCAAATCATCCCAATGACATAGTTGCAAACCTCATTCCGATAATTCTGACCTTCGTCCAGATCCGATATCCATCAGAAGATTTGTTCCAGACACACCCTAAAACCATTGCTGTCTTCATCTCTAGCTTCAGTGCCTACTGCTTGGCCTTTGGGTTTGTAAGCCATATTCATAATGATGGTCATAGAGATACTGGAAAATACAAGCGATGCTGCATAGCCATGATGGTATTTGGTTCGGTCTCAATTACTTCACTGGCCTCGCTTCTGTTTCCAAAGTCCTTGCAGCCTTCACTCTTCTTTTTGTGGGTGGGTGAATTGTTGCTAGTGCTGGCCTTGCTCCGGAAATTCCGATGGCAACATCGGATGAGCCCCATTTTGCCTGTGACCACATTGCATATTCCAAGACCCACAAGGACGATGATAGTCAATAGCGGGTCTCACTATATCATTCCAATGAATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

185

Amino Acids

21.12

Weight (kDa)

9.87

Isoelectric Point (pI)

51.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 432
AciI CCGC 2 cut(s) 67, 525
AclWI GGATC 2 cut(s) 78, 148
AcsI RAATTY 1 cut(s) 437
AcuI CTGAAG 1 cut(s) 205
AfaI GTAC 1 cut(s) 41
AfiI CCNNNNNNNGG 1 cut(s) 432
AluBI AGCT 1 cut(s) 219
AluI AGCT 1 cut(s) 219
Alw26I GTCTC 2 cut(s) 337, 534
AlwI GGATC 2 cut(s) 78, 148
AlwNI CAGNNNCTG 1 cut(s) 76
Aor13HI TCCGGA 1 cut(s) 432
AoxI GGCC 3 cut(s) 237, 348, 423
ApeKI GCWGC 2 cut(s) 303, 376
ApoI RAATTY 1 cut(s) 437
AsuHPI GGTGA 2 cut(s) 37, 416
BanII GRGCYC 1 cut(s) 464
BbsI GAAGAC 1 cut(s) 199
BbvI GCAGC 2 cut(s) 290, 388
BccI CCATC 4 cut(s) 172, 263, 310, 438
BcoDI GTCTC 2 cut(s) 337, 534
BfaI CTAG 2 cut(s) 216, 416
BisI GCNGC 3 cut(s) 68, 304, 377
BlsI GCNGC 3 cut(s) 69, 305, 378
BmsI GCATC 1 cut(s) 290
BoxI GACNNNNGTC 1 cut(s) 146
BpiI GAAGAC 1 cut(s) 199
BsaBI GATNNNNATC 1 cut(s) 163
BsaI GGTCTC 2 cut(s) 337, 534
BsaWI WCCGGW 1 cut(s) 432
Bsc4I CCNNNNNNNGG 1 cut(s) 432
Bse1I ACTGG 2 cut(s) 289, 351
Bse3DI GCAATG 2 cut(s) 198, 482
Bse8I GATNNNNATC 1 cut(s) 163
BseAI TCCGGA 1 cut(s) 432
BseGI GGATG 2 cut(s) 100, 462
BseJI GATNNNNATC 1 cut(s) 163
BseLI CCNNNNNNNGG 1 cut(s) 432
BseMI GCAATG 2 cut(s) 198, 482
BseMII CTCAG 1 cut(s) 68
BseNI ACTGG 2 cut(s) 289, 351
BseXI GCAGC 2 cut(s) 290, 388
BshFI GGCC 3 cut(s) 239, 350, 425
BsiSI CCGG 1 cut(s) 433
BslI CCNNNNNNNGG 1 cut(s) 432
BsmAI GTCTC 2 cut(s) 337, 534
BsnI GGCC 3 cut(s) 239, 350, 425
Bso31I GGTCTC 2 cut(s) 337, 534
Bsp1286I GDGCHC 1 cut(s) 464
Bsp13I TCCGGA 1 cut(s) 432
Bsp143I GATC 2 cut(s) 83, 153
BspACI CCGC 2 cut(s) 67, 525
BspANI GGCC 3 cut(s) 239, 350, 425
BspCNI CTCAG 1 cut(s) 69
BspEI TCCGGA 1 cut(s) 432
BspPI GGATC 2 cut(s) 78, 148
BspTNI GGTCTC 2 cut(s) 337, 534
BsrDI GCAATG 2 cut(s) 198, 482
BsrI ACTGG 2 cut(s) 289, 351
BssMI GATC 2 cut(s) 83, 153
Bst6I CTCTTC 1 cut(s) 392
BstC8I GCNNGC 1 cut(s) 423
BstDEI CTNAG 1 cut(s) 77
BstF5I GGATG 2 cut(s) 100, 462
BstKTI GATC 2 cut(s) 86, 156
BstMAI GTCTC 2 cut(s) 337, 534
BstMBI GATC 2 cut(s) 83, 153
BstMWI GCNNNNNNNGC 1 cut(s) 427
BstPAI GACNNNNGTC 1 cut(s) 146
BstV1I GCAGC 2 cut(s) 290, 388
BstV2I GAAGAC 1 cut(s) 199
BstX2I RGATCY 1 cut(s) 153
BstYI RGATCY 1 cut(s) 153
BsuRI GGCC 3 cut(s) 239, 350, 425
BtgZI GCGATG 1 cut(s) 313
BtsCI GGATG 2 cut(s) 100, 462
BtsIMutI CAGTG 2 cut(s) 229, 344
Cac8I GCNNGC 1 cut(s) 423
CaiI CAGNNNCTG 1 cut(s) 76
Csp6I GTAC 1 cut(s) 40
CviAII CATG 2 cut(s) 26, 313
CviQI GTAC 1 cut(s) 40
DdeI CTNAG 1 cut(s) 77
DpnI GATC 2 cut(s) 85, 155
DpnII GATC 2 cut(s) 83, 153
Eam1104I CTCTTC 1 cut(s) 392
EarI CTCTTC 1 cut(s) 392
Eco24I GRGCYC 1 cut(s) 464
Eco31I GGTCTC 2 cut(s) 337, 534
Eco32I GATATC 1 cut(s) 161
Eco57I CTGAAG 1 cut(s) 205
EcoRV GATATC 1 cut(s) 161
EcoT38I GRGCYC 1 cut(s) 464
FaeI CATG 2 cut(s) 29, 316
FaiI YATR 9 cut(s) 27, 113, 258, 264, 276, 308, 314, 489, 537
FatI CATG 2 cut(s) 25, 312
FauI CCCGC 1 cut(s) 518
Fnu4HI GCNGC 3 cut(s) 68, 304, 377
FokI GGATG 2 cut(s) 87, 469
FriOI GRGCYC 1 cut(s) 464
Fsp4HI GCNGC 3 cut(s) 68, 304, 377
FspBI CTAG 2 cut(s) 216, 416
GluI GCNGC 3 cut(s) 68, 304, 377
HaeIII GGCC 3 cut(s) 239, 350, 425
HapII CCGG 1 cut(s) 433
Hin1II CATG 2 cut(s) 29, 316
HpaII CCGG 1 cut(s) 433
HphI GGTGA 2 cut(s) 37, 416
Hpy188I TCNGA 7 cut(s) 78, 132, 141, 158, 169, 443, 456
Hpy188III TCNNGA 3 cut(s) 151, 181, 433
HpyAV CCTTC 2 cut(s) 154, 390
HpyCH4V TGCA 5 cut(s) 4, 119, 306, 376, 487
HpyF10VI GCNNNNNNNGC 1 cut(s) 427
HpyF3I CTNAG 1 cut(s) 77
Hsp92II CATG 2 cut(s) 29, 316
Kpn2I TCCGGA 1 cut(s) 432
Kzo9I GATC 2 cut(s) 83, 153
LmnI GCTCC 1 cut(s) 435
LpnPI CCDG 8 cut(s) 50, 164, 194, 270, 332, 407, 446, 486
Lsp1109I GCAGC 2 cut(s) 290, 388
LweI GCATC 1 cut(s) 290
MaeI CTAG 2 cut(s) 216, 416
MaeIII GTNAC 1 cut(s) 475
MalI GATC 2 cut(s) 85, 155
MboI GATC 2 cut(s) 83, 153
MboII GAAGA 3 cut(s) 182, 199, 379
MflI RGATCY 1 cut(s) 153
MhlI GDGCHC 1 cut(s) 464
MluCI AATT 4 cut(s) 135, 336, 407, 437
MnlI CCTC 4 cut(s) 97, 103, 134, 361
MroI TCCGGA 1 cut(s) 432
MslI CAYNNNNRTG 4 cut(s) 105, 267, 311, 545
MspI CCGG 1 cut(s) 433
MwoI GCNNNNNNNGC 1 cut(s) 427
NdeII GATC 2 cut(s) 83, 153
NlaIII CATG 2 cut(s) 29, 316
NmuCI GTSAC 1 cut(s) 475
PkrI GCNGC 3 cut(s) 69, 305, 378
PshAI GACNNNNGTC 1 cut(s) 146
PstNI CAGNNNCTG 1 cut(s) 76
PsuI RGATCY 1 cut(s) 153
RsaI GTAC 1 cut(s) 41
RsaNI GTAC 1 cut(s) 40
RseI CAYNNNNRTG 4 cut(s) 105, 267, 311, 545
SatI GCNGC 3 cut(s) 68, 304, 377
Sau3AI GATC 2 cut(s) 83, 153
SduI GDGCHC 1 cut(s) 464
SetI ASST 5 cut(s) 39, 95, 126, 146, 221
SfaNI GCATC 1 cut(s) 290
SmiMI CAYNNNNRTG 4 cut(s) 105, 267, 311, 545
Sse9I AATT 4 cut(s) 135, 336, 407, 437
SsiI CCGC 2 cut(s) 67, 525
SspI AATATT 1 cut(s) 58
SspMI CTAG 2 cut(s) 216, 416
TaqII GACCGA 1 cut(s) 319
TasI AATT 4 cut(s) 135, 336, 407, 437
TatI WGTACW 1 cut(s) 39
TauI GCSGC 1 cut(s) 70
TscAI CASTG 2 cut(s) 229, 351
TseFI GTSAC 1 cut(s) 475
TseI GCWGC 2 cut(s) 303, 376
Tsp45I GTSAC 1 cut(s) 475
TspDTI ATGAA 2 cut(s) 199, 251
TspRI CASTG 2 cut(s) 229, 351
XapI RAATTY 1 cut(s) 437
XspI CTAG 2 cut(s) 216, 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.