Rh6BG056400

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000574
Physical Location & Seq
Reverse (-)
9044252 .. 9061889
17638 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG056400.1

Sequence Viewer

Length: 1065 bp
ATGGCTGATTTCCGCCATCAATGGCCATCCTTTGTCTTACAGCCTGAACGTGTAAGTGAACGTGATAATATCTTCGTCATCTTCAACATTGTTCTAGTAGACTTTGCAAGACAAACAGCCCCCTCCACCTTCGCCATTTTCACTTTCATCGTTCCAATACTCCTCACCTTTATCCAGATCAGATTCCCAGCTGCCGGAATATTGTCTTCTCCATTTGAAACCCACCATACCAAGTTCATGGTAGCCATGCTCAGCTTACTTGGCTTCTGTTGCTTTGCCATTGGACCTACTCAAAACTTATTCCCAACTCACGCTAGAAAACTTCGCATGGCTATGAAGTTAACAGCTTCGCTCTCAGTGGCTTCACTTGTTTCTCTTCTGCTTCCCAAGCCGTGGGACCACGTTCCGTACGTGACCTACTTCTTGTATTTTACAGGCCAATGTCTTGGGTTAGTCAGAAATATATTTTTGGCTTATTACCGCCACGTTGCAAGAGGATTTGTGCGTACCTTACGCGCGCATCAACAACAGTTGAGAAGAACGCGCCCACCGTTGCCACTGACAGTCAGTCTGCCCAATATGTCCAACCAGCTAATTGCAAACCATGGATCGATCACGGAATATTTCCTCAATCTGGATTTAGCAGCTTTCAAAATCCGCCCCGTCGGAGCTCATCCCCGTGCAATCGCGCCTTATGTTGACTTTGGATTACAGCTTATAGGCGCTGATCTTATGTCAATACTTGGCCTTTACAAATTTGTTCAGCAGGAAAAGATTAAGGTTGTGAGGAGGAAAAAGAAGGATATATATGATGATTTTTTTTATCATGATGATTTGGACAAGCTGCCACCCAATTTGCCTCCACCACTTAAGACGTTGGCCACATGGGCTAATGATAACTTGAAGGATGGGATCACCATCCACACAACCTTAGGCGAGGAATTATTTGGATATCTAAAAAAGGTCGCCATCTTTAGAAGGGATGTGTATGCCATGACCAACATGAAGGAGGTTTCTGCCGGCTGCATTGTGATGTATATGAGGTTTGTAATGCATTTTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

354

Amino Acids

40.64

Weight (kDa)

9.77

Isoelectric Point (pI)

42.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 393
AccI GTMKAC 1 cut(s) 99
AccII CGCG 4 cut(s) 516, 518, 544, 689
AciI CCGC 3 cut(s) 13, 481, 658
AclWI GGATC 2 cut(s) 616, 920
AcoI YGGCCR 2 cut(s) 23, 879
AcsI RAATTY 1 cut(s) 755
AfaI GTAC 2 cut(s) 410, 508
AfiI CCNNNNNNNGG 3 cut(s) 194, 393, 634
AflII CTTAAG 1 cut(s) 869
AflIII ACRYGT 1 cut(s) 49
AgsI TTSAA 4 cut(s) 85, 218, 652, 904
AhdI GACNNNNNGTC 1 cut(s) 567
AluBI AGCT 8 cut(s) 191, 255, 347, 592, 647, 671, 715, 844
AluI AGCT 8 cut(s) 191, 255, 347, 592, 647, 671, 715, 844
Alw21I GWGCWC 1 cut(s) 673
AlwI GGATC 2 cut(s) 616, 920
AoxI GGCC 4 cut(s) 23, 436, 745, 879
ApeKI GCWGC 4 cut(s) 191, 644, 844, 1023
ApoI RAATTY 1 cut(s) 755
AspLEI GCGC 5 cut(s) 518, 520, 546, 691, 725
AspS9I GGNCC 2 cut(s) 284, 397
AsuHPI GGTGA 2 cut(s) 157, 907
AvaII GGWCC 2 cut(s) 284, 397
AxyI CCTNAGG 1 cut(s) 931
BalI TGGCCA 2 cut(s) 25, 881
BanII GRGCYC 1 cut(s) 673
BbsI GAAGAC 1 cut(s) 198
Bbv12I GWGCWC 1 cut(s) 673
BbvI GCAGC 4 cut(s) 178, 656, 831, 1010
BccI CCATC 5 cut(s) 24, 34, 902, 926, 977
BceAI ACGGC 1 cut(s) 376
BfaI CTAG 2 cut(s) 95, 315
BfoI RGCGCY 1 cut(s) 726
BfrI CTTAAG 1 cut(s) 869
BglI GCCNNNNNGGC 1 cut(s) 887
BisI GCNGC 4 cut(s) 192, 645, 845, 1024
BlpI GCTNAGC 1 cut(s) 251
BlsI GCNGC 4 cut(s) 193, 646, 846, 1025
Bme18I GGWCC 2 cut(s) 284, 397
BmeRI GACNNNNNGTC 1 cut(s) 567
BmgT120I GGNCC 2 cut(s) 284, 397
BmiI GGNNCC 1 cut(s) 398
BmsI GCATC 1 cut(s) 529
BpiI GAAGAC 1 cut(s) 198
Bpu1102I GCTNAGC 1 cut(s) 251
Bsa29I ATCGAT 1 cut(s) 611
BsaAI YACGTR 1 cut(s) 412
BsaBI GATNNNNATC 1 cut(s) 917
BsaJI CCNNGG 2 cut(s) 392, 604
Bsc4I CCNNNNNNNGG 3 cut(s) 194, 393, 634
Bse118I RCCGGY 1 cut(s) 1019
Bse21I CCTNAGG 1 cut(s) 931
Bse8I GATNNNNATC 1 cut(s) 917
BseCI ATCGAT 1 cut(s) 611
BseDI CCNNGG 2 cut(s) 392, 604
BseGI GGATG 5 cut(s) 26, 673, 913, 918, 988
BseJI GATNNNNATC 1 cut(s) 917
BseLI CCNNNNNNNGG 3 cut(s) 194, 393, 634
BseMII CTCAG 2 cut(s) 265, 369
BsePI GCGCGC 1 cut(s) 516
BseRI GAGGAG 2 cut(s) 152, 802
BseXI GCAGC 4 cut(s) 178, 656, 831, 1010
BseYI CCCAGC 1 cut(s) 187
Bsh1236I CGCG 4 cut(s) 516, 518, 544, 689
BshFI GGCC 4 cut(s) 25, 438, 747, 881
BshVI ATCGAT 1 cut(s) 611
BsiHKAI GWGCWC 1 cut(s) 673
BsiSI CCGG 2 cut(s) 195, 1020
BsiWI CGTACG 1 cut(s) 408
BslFI GGGAC 1 cut(s) 410
BslI CCNNNNNNNGG 3 cut(s) 194, 393, 634
BsmFI GGGAC 1 cut(s) 410
BsnI GGCC 4 cut(s) 25, 438, 747, 881
Bsp1286I GDGCHC 1 cut(s) 673
Bsp143I GATC 5 cut(s) 177, 608, 612, 727, 912
Bsp1720I GCTNAGC 1 cut(s) 251
Bsp19I CCATGG 1 cut(s) 604
BspACI CCGC 3 cut(s) 13, 481, 658
BspANI GGCC 4 cut(s) 25, 438, 747, 881
BspCNI CTCAG 2 cut(s) 264, 368
BspDI ATCGAT 1 cut(s) 611
BspFNI CGCG 4 cut(s) 516, 518, 544, 689
BspHI TCATGA 1 cut(s) 826
BspLI GGNNCC 1 cut(s) 398
BspPI GGATC 2 cut(s) 616, 920
BspTI CTTAAG 1 cut(s) 869
BsrFI RCCGGY 1 cut(s) 1019
BssAI RCCGGY 1 cut(s) 1019
BssECI CCNNGG 2 cut(s) 392, 604
BssHII GCGCGC 1 cut(s) 516
BssMI GATC 5 cut(s) 177, 608, 612, 727, 912
BssT1I CCWWGG 1 cut(s) 604
Bst4CI ACNGT 3 cut(s) 531, 552, 565
Bst6I CTCTTC 1 cut(s) 381
BstAFI CTTAAG 1 cut(s) 869
BstBAI YACGTR 1 cut(s) 412
BstC8I GCNNGC 2 cut(s) 518, 1021
BstDEI CTNAG 3 cut(s) 251, 355, 931
BstDSI CCRYGG 2 cut(s) 392, 604
BstF5I GGATG 5 cut(s) 26, 673, 913, 918, 988
BstFNI CGCG 4 cut(s) 516, 518, 544, 689
BstH2I RGCGCY 1 cut(s) 726
BstHHI GCGC 5 cut(s) 518, 520, 546, 691, 725
BstKTI GATC 5 cut(s) 180, 611, 615, 730, 915
BstMBI GATC 5 cut(s) 177, 608, 612, 727, 912
BstMWI GCNNNNNNNGC 4 cut(s) 261, 270, 388, 887
BstUI CGCG 4 cut(s) 516, 518, 544, 689
BstV1I GCAGC 4 cut(s) 178, 656, 831, 1010
BstV2I GAAGAC 1 cut(s) 198
BstXI CCANNNNNNTGG 2 cut(s) 238, 446
Bsu15I ATCGAT 1 cut(s) 611
Bsu36I CCTNAGG 1 cut(s) 931
BsuRI GGCC 4 cut(s) 25, 438, 747, 881
BsuTUI ATCGAT 1 cut(s) 611
BtgI CCRYGG 2 cut(s) 392, 604
BtsCI GGATG 5 cut(s) 26, 673, 913, 918, 988
BtsIMutI CAGTG 2 cut(s) 363, 557
Cac8I GCNNGC 2 cut(s) 518, 1021
CciI TCATGA 1 cut(s) 826
CfoI GCGC 5 cut(s) 518, 520, 546, 691, 725
Cfr10I RCCGGY 1 cut(s) 1019
Cfr13I GGNCC 2 cut(s) 284, 397
ClaI ATCGAT 1 cut(s) 611
Csp6I GTAC 2 cut(s) 409, 507
CspCI CAANNNNNGTGG 2 cut(s) 837, 872
CviAII CATG 8 cut(s) 238, 247, 328, 605, 827, 885, 994, 1003
CviQI GTAC 2 cut(s) 409, 507
DdeI CTNAG 3 cut(s) 251, 355, 931
DpnI GATC 5 cut(s) 179, 610, 614, 729, 914
DpnII GATC 5 cut(s) 177, 608, 612, 727, 912
DraI TTTAAA 1 cut(s) 1060
DriI GACNNNNNGTC 1 cut(s) 567
EaeI YGGCCR 2 cut(s) 23, 879
Eam1104I CTCTTC 1 cut(s) 381
Eam1105I GACNNNNNGTC 1 cut(s) 567
EarI CTCTTC 1 cut(s) 381
EciI GGCGGA 1 cut(s) 647
Ecl136II GAGCTC 1 cut(s) 671
Eco130I CCWWGG 1 cut(s) 604
Eco24I GRGCYC 1 cut(s) 673
Eco32I GATATC 1 cut(s) 953
Eco47I GGWCC 2 cut(s) 284, 397
Eco53kI GAGCTC 1 cut(s) 671
Eco81I CCTNAGG 1 cut(s) 931
EcoICRI GAGCTC 1 cut(s) 671
EcoRV GATATC 1 cut(s) 953
EcoT14I CCWWGG 1 cut(s) 604
EcoT22I ATGCAT 1 cut(s) 1056
EcoT38I GRGCYC 1 cut(s) 673
ErhI CCWWGG 1 cut(s) 604
FaeI CATG 8 cut(s) 241, 250, 331, 608, 830, 888, 997, 1006
FaqI GGGAC 1 cut(s) 410
FatI CATG 8 cut(s) 237, 246, 327, 604, 826, 884, 993, 1002
FblI GTMKAC 1 cut(s) 99
Fnu4HI GCNGC 4 cut(s) 192, 645, 845, 1024
FokI GGATG 5 cut(s) 13, 660, 905, 920, 995
FriOI GRGCYC 1 cut(s) 673
Fsp4HI GCNGC 4 cut(s) 192, 645, 845, 1024
FspBI CTAG 2 cut(s) 95, 315
GlaI GCGC 5 cut(s) 517, 519, 545, 690, 724
GluI GCNGC 4 cut(s) 192, 645, 845, 1024
GsaI CCCAGC 1 cut(s) 191
HaeII RGCGCY 1 cut(s) 726
HaeIII GGCC 4 cut(s) 25, 438, 747, 881
HapII CCGG 2 cut(s) 195, 1020
HhaI GCGC 5 cut(s) 518, 520, 546, 691, 725
Hin1II CATG 8 cut(s) 241, 250, 331, 608, 830, 888, 997, 1006
Hin6I GCGC 5 cut(s) 516, 518, 544, 689, 723
HinP1I GCGC 5 cut(s) 516, 518, 544, 689, 723
HincII GTYRAC 2 cut(s) 342, 700
HindII GTYRAC 2 cut(s) 342, 700
HinfI GANTC 1 cut(s) 183
HpaI GTTAAC 1 cut(s) 342
HpaII CCGG 2 cut(s) 195, 1020
HphI GGTGA 2 cut(s) 157, 907
Hpy166II GTNNAC 4 cut(s) 59, 100, 342, 700
Hpy188I TCNGA 3 cut(s) 182, 458, 668
Hpy188III TCNNGA 3 cut(s) 175, 635, 827
Hpy8I GTNNAC 4 cut(s) 59, 100, 342, 700
Hpy99I CGWCG 1 cut(s) 668
HpyAV CCTTC 5 cut(s) 139, 793, 898, 972, 1000
HpyCH4III ACNGT 3 cut(s) 531, 552, 565
HpyCH4IV ACGT 6 cut(s) 49, 61, 402, 411, 486, 875
HpyCH4V TGCA 6 cut(s) 107, 491, 599, 683, 1026, 1054
HpyF10VI GCNNNNNNNGC 4 cut(s) 261, 270, 388, 887
HpyF3I CTNAG 3 cut(s) 251, 355, 931
HpySE526I ACGT 6 cut(s) 49, 61, 402, 411, 486, 875
Hsp92II CATG 8 cut(s) 241, 250, 331, 608, 830, 888, 997, 1006
HspAI GCGC 5 cut(s) 516, 518, 544, 689, 723
KroI GCCGGC 1 cut(s) 1019
KroNI GCCGGC 1 cut(s) 1021
KspAI GTTAAC 1 cut(s) 342
Kzo9I GATC 5 cut(s) 177, 608, 612, 727, 912
LmnI GCTCC 1 cut(s) 668
LpnPI CCDG 9 cut(s) 57, 188, 201, 208, 420, 602, 620, 752, 1033
Lsp1109I GCAGC 4 cut(s) 178, 656, 831, 1010
LweI GCATC 1 cut(s) 529
MaeI CTAG 2 cut(s) 95, 315
MaeII ACGT 6 cut(s) 49, 61, 402, 411, 486, 875
MaeIII GTNAC 1 cut(s) 412
MalI GATC 5 cut(s) 179, 610, 614, 729, 914
MboI GATC 5 cut(s) 177, 608, 612, 727, 912
MboII GAAGA 5 cut(s) 64, 73, 198, 368, 549
MhlI GDGCHC 1 cut(s) 673
MlsI TGGCCA 2 cut(s) 25, 881
MluCI AATT 4 cut(s) 594, 755, 853, 941
MluNI TGGCCA 2 cut(s) 25, 881
MmeI TCCRAC 2 cut(s) 609, 646
Mox20I TGGCCA 2 cut(s) 25, 881
Mph1103I ATGCAT 1 cut(s) 1056
MroNI GCCGGC 1 cut(s) 1019
MscI TGGCCA 2 cut(s) 25, 881
MseI TTAA 4 cut(s) 341, 777, 870, 1059
MslI CAYNNNNRTG 3 cut(s) 332, 678, 1031
Msp20I TGGCCA 2 cut(s) 25, 881
MspA1I CMGCKG 1 cut(s) 191
MspCI CTTAAG 1 cut(s) 869
MspI CCGG 2 cut(s) 195, 1020
MvnI CGCG 4 cut(s) 516, 518, 544, 689
MwoI GCNNNNNNNGC 4 cut(s) 261, 270, 388, 887
NaeI GCCGGC 1 cut(s) 1021
NcoI CCATGG 1 cut(s) 604
NdeII GATC 5 cut(s) 177, 608, 612, 727, 912
NgoMIV GCCGGC 1 cut(s) 1019
NlaIII CATG 8 cut(s) 241, 250, 331, 608, 830, 888, 997, 1006
NlaIV GGNNCC 1 cut(s) 398
NmuCI GTSAC 1 cut(s) 412
NsiI ATGCAT 1 cut(s) 1056
PagI TCATGA 1 cut(s) 826
PauI GCGCGC 1 cut(s) 516
PcsI WCGNNNNNNNCGW 2 cut(s) 408, 548
PdiI GCCGGC 1 cut(s) 1021
PfeI GAWTC 1 cut(s) 183
Pfl23II CGTACG 1 cut(s) 408
PflMI CCANNNNNTGG 1 cut(s) 393
PkrI GCNGC 4 cut(s) 193, 646, 846, 1025
Ppu21I YACGTR 1 cut(s) 412
Psp124BI GAGCTC 1 cut(s) 673
PspFI CCCAGC 1 cut(s) 187
PspLI CGTACG 1 cut(s) 408
PspN4I GGNNCC 1 cut(s) 398
PspPI GGNCC 2 cut(s) 284, 397
PteI GCGCGC 1 cut(s) 516
PvuII CAGCTG 1 cut(s) 191
RsaI GTAC 2 cut(s) 410, 508
RsaNI GTAC 2 cut(s) 409, 507
RseI CAYNNNNRTG 3 cut(s) 332, 678, 1031
SacI GAGCTC 1 cut(s) 673
SaqAI TTAA 4 cut(s) 341, 777, 870, 1059
SatI GCNGC 4 cut(s) 192, 645, 845, 1024
Sau3AI GATC 5 cut(s) 177, 608, 612, 727, 912
Sau96I GGNCC 2 cut(s) 284, 397
SduI GDGCHC 1 cut(s) 673
SfaNI GCATC 1 cut(s) 529
SinI GGWCC 2 cut(s) 284, 397
SmiMI CAYNNNNRTG 3 cut(s) 332, 678, 1031
SmlI CTYRAG 1 cut(s) 869
SmoI CTYRAG 1 cut(s) 869
Sse9I AATT 4 cut(s) 594, 755, 853, 941
SsiI CCGC 3 cut(s) 13, 481, 658
SspI AATATT 2 cut(s) 201, 623
SspMI CTAG 2 cut(s) 95, 315
SstI GAGCTC 1 cut(s) 673
StyI CCWWGG 1 cut(s) 604
TaaI ACNGT 3 cut(s) 531, 552, 565
TaiI ACGT 6 cut(s) 52, 64, 405, 414, 489, 878
TaqI TCGA 1 cut(s) 611
TasI AATT 4 cut(s) 594, 755, 853, 941
TfiI GAWTC 1 cut(s) 183
Tru1I TTAA 4 cut(s) 341, 777, 870, 1059
Tru9I TTAA 4 cut(s) 341, 777, 870, 1059
TscAI CASTG 2 cut(s) 363, 564
TseFI GTSAC 1 cut(s) 412
TseI GCWGC 4 cut(s) 191, 644, 844, 1023
Tsp45I GTSAC 1 cut(s) 412
TspDTI ATGAA 4 cut(s) 136, 226, 350, 1019
TspGWI ACGGA 2 cut(s) 396, 632
TspRI CASTG 2 cut(s) 363, 564
Van91I CCANNNNNTGG 1 cut(s) 393
Vha464I CTTAAG 1 cut(s) 869
VpaK11BI GGWCC 2 cut(s) 284, 397
XapI RAATTY 1 cut(s) 755
XmiI GTMKAC 1 cut(s) 99
XspI CTAG 2 cut(s) 95, 315
Zsp2I ATGCAT 1 cut(s) 1056
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.