Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0000574

Physical Location & Seq

Genomic Coordinates Reverse (-)

19978182 .. 19978697

Gene Structure 516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G143000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGAATATTAACCTTAATTTCAATGTCATTTACTTGTTCAACAATCTCAACCTGCAGTTGAGGAACCCACTCTATGATCACGACATTCTTGCATTCATCATTCCAACACTCCTCACGTTGGTGCAGATCAGATATCCACCAGATCAAGATCTCTTCCAAACACACCCTATGGCCATGAGCGTTGTGCTGTCTAGTTTGCTTGCTTATTGCTTGGCCTTCAGCTTGTGGGTGCTAAGTATAAGACATTATGCTCGAGGACAAAATCTTGCATATGCTCATTTCTGGTGCCCTATGGCCATGAGGCTGTTTGGTTCAGTCTCGGTTACTTCACTTCTCTACATTTTATTTCCCCATGACCCCTCCTGGCAGCCTCTCATTTACATTTTGTGGGTAGCTCAGTTGCTGCTGCTGCTGGCCTTGCTCCGGAAACTGGTGACCACCACATGCCCACTTTTGCTGCGACCAGAGAGGATAGTCAATATTGGGCCCCACTATATCATTCGAGTGAATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

172

Amino Acids

19.89

Weight (kDa)

8.88

Isoelectric Point (pI)

46.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000574)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13031 FvH4_3g38201 FvH4_7g11471 FvH4_7g15661
malus_domestica	MD02G1210800.v1.1 MD07G1115400.v1.1
prunus_persica	Prupe.2G076600_v2.0.a1 Prupe.2G137400_v2.0.a1 Prupe.2G142700_v2.0.a1 Prupe.2G143000_v2.0.a1 Prupe.2G143100_v2.0.a1 Prupe.2G179900_v2.0.a1 Prupe.2G180000_v2.0.a1 Prupe.2G180100_v2.0.a1 Prupe.2G180200_v2.0.a1 Prupe.2G180300_v2.0.a1
pyrus_communis	pycom07g10060
rosa_laevigata	RLG00000000617 RLG00000002126 RLG00000002129 RLG00000002130 RLG00000014963 RLG00000014966 RLG00000017055 RLG00000017058 RLG00000017061 RLG00000028520 RLG00000028521 RLG00000029984 RLG00000035987 RLG00000035999 RLG00000036002
rosa_roxburghii	Rroxscaffold_1G00012110 Rroxscaffold_1G00012170 Rroxscaffold_3G00219560 Rroxscaffold_4G00298060 Rroxscaffold_4G00298110 Rroxscaffold_4G00298120 Rroxscaffold_4G00305310 Rroxscaffold_7G00211490
rosa_rugosa	Rorug01G0206500 Rorug01G0261300 Rorug01G0261400 Rorug05G0392600 Rorug07G0339600 Rorug07G0339700
rosa_samantha	Rh1AG223300 Rh1AG223400 Rh1AG275200 Rh1AG275300 Rh1BG189500 Rh1BG189600 Rh1BG190900 Rh1BG242100 Rh1CG258200 Rh1CG258500 Rh1CG258600 Rh1DG218300 Rh1DG218400 Rh1DG270900 Rh1DG271000 Rh2AG144400 Rh2AG144600 Rh2AG145000 Rh2BG149400 Rh2BG149700 Rh2BG150000 Rh2BG150100 Rh2BG150300 Rh2CG150700 Rh2CG150900 Rh2DG149900 Rh2DG150100 Rh2DG150400 Rh5DG481400 Rh6AG063300 Rh6BG056400 Rh6BG056600 Rh6BG057000 Rh6CG056500 Rh7AG494100 Rh7AG494200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	60
AccB1I	GGYRCC	1 cut(s)	285
AccIII	TCCGGA	1 cut(s)	423
AcoI	YGGCCR	2 cut(s)	171, 294
AcuI	CTGAAG	1 cut(s)	202
AfiI	CCNNNNNNNGG	3 cut(s)	118, 423, 430
AgsI	TTSAA	2 cut(s)	22, 40
AjnI	CCWGG	1 cut(s)	362
AleI	CACNNNNGTG	1 cut(s)	119
AluBI	AGCT	2 cut(s)	222, 395
AluI	AGCT	2 cut(s)	222, 395
Alw26I	GTCTC	1 cut(s)	322
AlwNI	CAGNNNCTG	1 cut(s)	403
Ama87I	CYCGRG	1 cut(s)	252
Aor13HI	TCCGGA	1 cut(s)	423
AoxI	GGCC	5 cut(s)	171, 213, 294, 414, 485
ApaI	GGGCCC	1 cut(s)	489
ApeKI	GCWGC	5 cut(s)	367, 403, 406, 409, 457
AspS9I	GGNCC	2 cut(s)	485, 486
AsuHPI	GGTGA	1 cut(s)	445
AvaI	CYCGRG	1 cut(s)	252
BaeGI	GKGCMC	2 cut(s)	290, 489
BalI	TGGCCA	2 cut(s)	173, 296
BanI	GGYRCC	1 cut(s)	285
BanII	GRGCYC	1 cut(s)	489
BbvI	GCAGC	5 cut(s)	379, 390, 393, 396, 444
BcgI	CGANNNNNNTGC	2 cut(s)	71, 105
BciT130I	CCWGG	1 cut(s)	364
BclI	TGATCA	1 cut(s)	76
BcoDI	GTCTC	1 cut(s)	322
BfaI	CTAG	1 cut(s)	192
BfmI	CTRYAG	1 cut(s)	53
BfuAI	ACCTGC	1 cut(s)	60
BglII	AGATCT	1 cut(s)	148
BisI	GCNGC	5 cut(s)	368, 404, 407, 410, 458
BlsI	GCNGC	5 cut(s)	369, 405, 408, 411, 459
Bme1390I	CCNGG	1 cut(s)	364
BmeT110I	CYCGRG	1 cut(s)	252
BmgT120I	GGNCC	2 cut(s)	485, 486
BmiI	GGNNCC	4 cut(s)	65, 287, 487, 488
BmrFI	CCNGG	1 cut(s)	364
BsaBI	GATNNNNATC	1 cut(s)	147
BsaWI	WCCGGW	1 cut(s)	423
Bsc4I	CCNNNNNNNGG	3 cut(s)	118, 423, 430
Bse1I	ACTGG	1 cut(s)	435
Bse8I	GATNNNNATC	1 cut(s)	147
BseAI	TCCGGA	1 cut(s)	423
BseBI	CCWGG	1 cut(s)	364
BseJI	GATNNNNATC	1 cut(s)	147
BseLI	CCNNNNNNNGG	3 cut(s)	118, 423, 430
BseMII	CTCAG	1 cut(s)	410
BseNI	ACTGG	1 cut(s)	435
BseRI	GAGGAG	1 cut(s)	101
BseSI	GKGCMC	2 cut(s)	290, 489
BseXI	GCAGC	5 cut(s)	379, 390, 393, 396, 444
BsgI	GTGCAG	1 cut(s)	143
BshFI	GGCC	5 cut(s)	173, 215, 296, 416, 487
BshNI	GGYRCC	1 cut(s)	285
BsiHKCI	CYCGRG	1 cut(s)	252
BsiSI	CCGG	1 cut(s)	424
BslI	CCNNNNNNNGG	3 cut(s)	118, 423, 430
BsmAI	GTCTC	1 cut(s)	322
BsmI	GAATGC	1 cut(s)	92
BsnI	GGCC	5 cut(s)	173, 215, 296, 416, 487
BsoBI	CYCGRG	1 cut(s)	252
Bsp120I	GGGCCC	1 cut(s)	485
Bsp1286I	GDGCHC	2 cut(s)	290, 489
Bsp13I	TCCGGA	1 cut(s)	423
Bsp143I	GATC	4 cut(s)	76, 126, 142, 148
BspANI	GGCC	5 cut(s)	173, 215, 296, 416, 487
BspCNI	CTCAG	1 cut(s)	409
BspEI	TCCGGA	1 cut(s)	423
BspLI	GGNNCC	4 cut(s)	65, 287, 487, 488
BspMAI	CTGCAG	1 cut(s)	57
BspMI	ACCTGC	1 cut(s)	60
BspT107I	GGYRCC	1 cut(s)	285
BsrI	ACTGG	1 cut(s)	435
BssMI	GATC	4 cut(s)	76, 126, 142, 148
Bst2UI	CCWGG	1 cut(s)	364
Bst6I	CTCTTC	1 cut(s)	158
BstC8I	GCNNGC	2 cut(s)	201, 414
BstDEI	CTNAG	2 cut(s)	233, 396
BstEII	GGTNACC	1 cut(s)	433
BstKTI	GATC	4 cut(s)	79, 129, 145, 151
BstMAI	GTCTC	1 cut(s)	322
BstMBI	GATC	4 cut(s)	76, 126, 142, 148
BstMWI	GCNNNNNNNGC	2 cut(s)	409, 418
BstNI	CCWGG	1 cut(s)	364
BstNSI	RCATGY	1 cut(s)	447
BstPI	GGTNACC	1 cut(s)	433
BstSCI	CCNGG	1 cut(s)	362
BstSFI	CTRYAG	1 cut(s)	53
BstSLI	GKGCMC	2 cut(s)	290, 489
BstV1I	GCAGC	5 cut(s)	379, 390, 393, 396, 444
BstX2I	RGATCY	1 cut(s)	148
BstYI	RGATCY	1 cut(s)	148
BsuRI	GGCC	5 cut(s)	173, 215, 296, 416, 487
BveI	ACCTGC	1 cut(s)	60
Cac8I	GCNNGC	2 cut(s)	201, 414
CaiI	CAGNNNCTG	1 cut(s)	403
Cfr13I	GGNCC	2 cut(s)	485, 486
CviAII	CATG	4 cut(s)	175, 298, 353, 444
CviJI	RGCY	9 cut(s)	173, 215, 222, 296, 304, 370, 395, 416, 487
CviKI_1	RGCY	9 cut(s)	173, 215, 222, 296, 304, 370, 395, 416, 487
DdeI	CTNAG	2 cut(s)	233, 396
DpnI	GATC	4 cut(s)	78, 128, 144, 150
DpnII	GATC	4 cut(s)	76, 126, 142, 148
EaeI	YGGCCR	2 cut(s)	171, 294
Eam1104I	CTCTTC	1 cut(s)	158
EarI	CTCTTC	1 cut(s)	158
Eco24I	GRGCYC	1 cut(s)	489
Eco32I	GATATC	1 cut(s)	134
Eco57I	CTGAAG	1 cut(s)	202
Eco88I	CYCGRG	1 cut(s)	252
Eco91I	GGTNACC	1 cut(s)	433
EcoO109I	RGGNCCY	1 cut(s)	486
EcoO65I	GGTNACC	1 cut(s)	433
EcoRII	CCWGG	1 cut(s)	362
EcoRV	GATATC	1 cut(s)	134
EcoT38I	GRGCYC	1 cut(s)	489
FaeI	CATG	4 cut(s)	178, 301, 356, 447
FatI	CATG	4 cut(s)	174, 297, 352, 443
FauNDI	CATATG	1 cut(s)	271
FbaI	TGATCA	1 cut(s)	76
Fnu4HI	GCNGC	5 cut(s)	368, 404, 407, 410, 458
FriOI	GRGCYC	1 cut(s)	489
Fsp4HI	GCNGC	5 cut(s)	368, 404, 407, 410, 458
FspBI	CTAG	1 cut(s)	192
GluI	GCNGC	5 cut(s)	368, 404, 407, 410, 458
HaeIII	GGCC	5 cut(s)	173, 215, 296, 416, 487
HapII	CCGG	1 cut(s)	424
Hin1II	CATG	4 cut(s)	178, 301, 356, 447
HpaII	CCGG	1 cut(s)	424
HphI	GGTGA	1 cut(s)	445
Hpy188I	TCNGA	1 cut(s)	131
Hpy188III	TCNNGA	3 cut(s)	80, 146, 424
HpyAV	CCTTC	1 cut(s)	226
HpyCH4IV	ACGT	1 cut(s)	116
HpyCH4V	TGCA	4 cut(s)	55, 92, 124, 269
HpyF10VI	GCNNNNNNNGC	2 cut(s)	409, 418
HpyF3I	CTNAG	2 cut(s)	233, 396
HpySE526I	ACGT	1 cut(s)	116
Hsp92II	CATG	4 cut(s)	178, 301, 356, 447
Kpn2I	TCCGGA	1 cut(s)	423
Ksp22I	TGATCA	1 cut(s)	76
Kzo9I	GATC	4 cut(s)	76, 126, 142, 148
LmnI	GCTCC	1 cut(s)	426
LpnPI	CCDG	9 cut(s)	65, 153, 268, 349, 376, 398, 416, 437, 477
Lsp1109I	GCAGC	5 cut(s)	379, 390, 393, 396, 444
MaeI	CTAG	1 cut(s)	192
MaeII	ACGT	1 cut(s)	116
MaeIII	GTNAC	2 cut(s)	322, 433
MalI	GATC	4 cut(s)	78, 128, 144, 150
MboI	GATC	4 cut(s)	76, 126, 142, 148
MboII	GAAGA	1 cut(s)	145
MflI	RGATCY	1 cut(s)	148
MhlI	GDGCHC	2 cut(s)	290, 489
MlsI	TGGCCA	2 cut(s)	173, 296
MluCI	AATT	1 cut(s)	16
MluNI	TGGCCA	2 cut(s)	173, 296
MmeI	TCCRAC	1 cut(s)	128
MnlI	CCTC	7 cut(s)	54, 122, 248, 294, 370, 381, 462
Mox20I	TGGCCA	2 cut(s)	173, 296
MroI	TCCGGA	1 cut(s)	423
MscI	TGGCCA	2 cut(s)	173, 296
MseI	TTAA	2 cut(s)	9, 15
MslI	CAYNNNNRTG	2 cut(s)	119, 503
Msp20I	TGGCCA	2 cut(s)	173, 296
MspI	CCGG	1 cut(s)	424
MspR9I	CCNGG	1 cut(s)	364
Mva1269I	GAATGC	1 cut(s)	92
MvaI	CCWGG	1 cut(s)	364
MwoI	GCNNNNNNNGC	2 cut(s)	409, 418
NdeI	CATATG	1 cut(s)	271
NdeII	GATC	4 cut(s)	76, 126, 142, 148
NlaIII	CATG	4 cut(s)	178, 301, 356, 447
NlaIV	GGNNCC	4 cut(s)	65, 287, 487, 488
NmuCI	GTSAC	1 cut(s)	433
NspI	RCATGY	1 cut(s)	447
OliI	CACNNNNGTG	1 cut(s)	119
PaeR7I	CTCGAG	1 cut(s)	252
PctI	GAATGC	1 cut(s)	92
PkrI	GCNGC	5 cut(s)	369, 405, 408, 411, 459
Psp6I	CCWGG	1 cut(s)	362
PspEI	GGTNACC	1 cut(s)	433
PspGI	CCWGG	1 cut(s)	362
PspN4I	GGNNCC	4 cut(s)	65, 287, 487, 488
PspOMI	GGGCCC	1 cut(s)	485
PspPI	GGNCC	2 cut(s)	485, 486
PspXI	VCTCGAGB	1 cut(s)	252
PstI	CTGCAG	1 cut(s)	57
PstNI	CAGNNNCTG	1 cut(s)	403
PsuI	RGATCY	1 cut(s)	148
RseI	CAYNNNNRTG	2 cut(s)	119, 503
SaqAI	TTAA	2 cut(s)	9, 15
SatI	GCNGC	5 cut(s)	368, 404, 407, 410, 458
Sau3AI	GATC	4 cut(s)	76, 126, 142, 148
Sau96I	GGNCC	2 cut(s)	485, 486
ScrFI	CCNGG	1 cut(s)	364
SduI	GDGCHC	2 cut(s)	290, 489
SetI	ASST	5 cut(s)	15, 54, 119, 224, 397
SfcI	CTRYAG	1 cut(s)	53
Sfr274I	CTCGAG	1 cut(s)	252
SlaI	CTCGAG	1 cut(s)	252
SmiMI	CAYNNNNRTG	2 cut(s)	119, 503
SmlI	CTYRAG	1 cut(s)	252
SmoI	CTYRAG	1 cut(s)	252
Sse9I	AATT	1 cut(s)	16
SspI	AATATT	2 cut(s)	7, 481
SspMI	CTAG	1 cut(s)	192
StyD4I	CCNGG	1 cut(s)	362
TaiI	ACGT	1 cut(s)	119
TaqI	TCGA	2 cut(s)	253, 502
TasI	AATT	1 cut(s)	16
Tru1I	TTAA	2 cut(s)	9, 15
Tru9I	TTAA	2 cut(s)	9, 15
TseFI	GTSAC	1 cut(s)	433
TseI	GCWGC	5 cut(s)	367, 403, 406, 409, 457
Tsp45I	GTSAC	1 cut(s)	433
TspDTI	ATGAA	2 cut(s)	17, 85
XceI	RCATGY	1 cut(s)	447
XhoI	CTCGAG	1 cut(s)	252
XspI	CTAG	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.