Rh6BG057000

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000574
Physical Location & Seq
Reverse (-)
9081816 .. 9082454
639 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG057000.1

Sequence Viewer

Length: 639 bp
ATGGCTGATTTCCGCCATCAATGGCCATCCTTGGTCTTACCGCCTGAACATGTCAGTGAACGTGATAATATCTTCGTCATATTCAACATTGTTCTAGTAGACTTTGCAAGACAAACAGCCCCCTCCACCTTCGCCATTTTCACTTTCATCGTTCCAATACTCCTCACCTTTATCCAGATCAGATTCCATTCTGCCGGAATACGGTCTTCTCCATTTGAAACCCACTATACCACGTTCATGGTAGCCATGCTCAGCTTACTTGGCTTCTGTTGCTTTGCCATTGGAGCTACTCTAAACTTATTCCCAACTCACGCTAGAAAACTTCGCATGGCTAAGAAGTTAACAGCTTTGCTCTCAATGGCTTCACTTGTTTCTCTTCTGCTTCCCAAGCCGTGGGACCACGTGCCGTACGTGACCTACTTCTTGTATTTTACACGCCGGTGTCTTGGGTTGGTCAGAAATATATTTCTGGCTTATTACCACCACGTTGCCAGTGGATTTGTGCGTATCTTACGCGCGCATCAACAGCAGTTGAGACGAATGCGCCCACTGTTGCCCCTGACAGTCAGTCAGCCCAATGTGTCCAACCAGCCAATTGTAAATCATGGATCGATCACGGAAGTCAGAACCCTCCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

212

Amino Acids

24.38

Weight (kDa)

10.5

Isoelectric Point (pI)

52.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 393
AccI GTMKAC 1 cut(s) 99
AccII CGCG 2 cut(s) 516, 518
AciI CCGC 2 cut(s) 13, 41
AclWI GGATC 1 cut(s) 616
AcoI YGGCCR 1 cut(s) 23
AcvI CACGTG 1 cut(s) 403
AfaI GTAC 1 cut(s) 410
AfiI CCNNNNNNNGG 2 cut(s) 201, 393
AflIII ACRYGT 1 cut(s) 49
AgsI TTSAA 2 cut(s) 85, 218
AhdI GACNNNNNGTC 1 cut(s) 567
AleI CACNNNNGTG 1 cut(s) 439
AluBI AGCT 3 cut(s) 255, 287, 347
AluI AGCT 3 cut(s) 255, 287, 347
Alw26I GTCTC 1 cut(s) 529
AlwI GGATC 1 cut(s) 616
AoxI GGCC 1 cut(s) 23
AspLEI GCGC 3 cut(s) 518, 520, 546
AspS9I GGNCC 1 cut(s) 397
AsuHPI GGTGA 1 cut(s) 157
AvaII GGWCC 1 cut(s) 397
BalI TGGCCA 1 cut(s) 25
BbrPI CACGTG 1 cut(s) 403
BbsI GAAGAC 1 cut(s) 198
BccI CCATC 2 cut(s) 24, 34
BceAI ACGGC 2 cut(s) 376, 391
BcoDI GTCTC 1 cut(s) 529
BfaI CTAG 2 cut(s) 95, 315
BlpI GCTNAGC 1 cut(s) 251
Bme18I GGWCC 1 cut(s) 397
BmeRI GACNNNNNGTC 1 cut(s) 567
BmgT120I GGNCC 1 cut(s) 397
BmiI GGNNCC 1 cut(s) 398
BmsI GCATC 1 cut(s) 529
BpiI GAAGAC 1 cut(s) 198
Bpu1102I GCTNAGC 1 cut(s) 251
Bsa29I ATCGAT 1 cut(s) 611
BsaAI YACGTR 2 cut(s) 403, 412
BsaJI CCNNGG 2 cut(s) 30, 392
Bsc4I CCNNNNNNNGG 2 cut(s) 201, 393
Bse118I RCCGGY 1 cut(s) 438
Bse1I ACTGG 1 cut(s) 492
BseCI ATCGAT 1 cut(s) 611
BseDI CCNNGG 2 cut(s) 30, 392
BseGI GGATG 1 cut(s) 26
BseLI CCNNNNNNNGG 2 cut(s) 201, 393
BseMII CTCAG 1 cut(s) 265
BseNI ACTGG 1 cut(s) 492
BsePI GCGCGC 1 cut(s) 516
BseRI GAGGAG 1 cut(s) 152
Bsh1236I CGCG 2 cut(s) 516, 518
BshFI GGCC 1 cut(s) 25
BshVI ATCGAT 1 cut(s) 611
BsiSI CCGG 2 cut(s) 195, 439
BsiWI CGTACG 1 cut(s) 408
BslFI GGGAC 1 cut(s) 410
BslI CCNNNNNNNGG 2 cut(s) 201, 393
BsmAI GTCTC 1 cut(s) 529
BsmBI CGTCTC 1 cut(s) 529
BsmFI GGGAC 1 cut(s) 410
BsmI GAATGC 1 cut(s) 546
BsnI GGCC 1 cut(s) 25
Bsp143I GATC 3 cut(s) 177, 608, 612
Bsp1720I GCTNAGC 1 cut(s) 251
BspACI CCGC 2 cut(s) 13, 41
BspANI GGCC 1 cut(s) 25
BspCNI CTCAG 1 cut(s) 264
BspDI ATCGAT 1 cut(s) 611
BspFNI CGCG 2 cut(s) 516, 518
BspLI GGNNCC 1 cut(s) 398
BspPI GGATC 1 cut(s) 616
BsrFI RCCGGY 1 cut(s) 438
BsrI ACTGG 1 cut(s) 492
BssAI RCCGGY 1 cut(s) 438
BssECI CCNNGG 2 cut(s) 30, 392
BssHII GCGCGC 1 cut(s) 516
BssMI GATC 3 cut(s) 177, 608, 612
BssT1I CCWWGG 1 cut(s) 30
Bst4CI ACNGT 3 cut(s) 204, 552, 565
Bst6I CTCTTC 1 cut(s) 381
BstBAI YACGTR 2 cut(s) 403, 412
BstC8I GCNNGC 1 cut(s) 518
BstDEI CTNAG 2 cut(s) 251, 333
BstDSI CCRYGG 1 cut(s) 392
BstF5I GGATG 1 cut(s) 26
BstFNI CGCG 2 cut(s) 516, 518
BstHHI GCGC 3 cut(s) 518, 520, 546
BstKTI GATC 3 cut(s) 180, 611, 615
BstMAI GTCTC 1 cut(s) 529
BstMBI GATC 3 cut(s) 177, 608, 612
BstMWI GCNNNNNNNGC 5 cut(s) 261, 270, 284, 388, 526
BstNSI RCATGY 1 cut(s) 53
BstUI CGCG 2 cut(s) 516, 518
BstV2I GAAGAC 1 cut(s) 198
BstXI CCANNNNNNTGG 1 cut(s) 238
Bsu15I ATCGAT 1 cut(s) 611
BsuRI GGCC 1 cut(s) 25
BsuTUI ATCGAT 1 cut(s) 611
BtgI CCRYGG 1 cut(s) 392
BtsCI GGATG 1 cut(s) 26
BtsIMutI CAGTG 3 cut(s) 61, 499, 548
Cac8I GCNNGC 1 cut(s) 518
CfoI GCGC 3 cut(s) 518, 520, 546
Cfr10I RCCGGY 1 cut(s) 438
Cfr13I GGNCC 1 cut(s) 397
ClaI ATCGAT 1 cut(s) 611
Csp6I GTAC 1 cut(s) 409
CviAII CATG 5 cut(s) 50, 238, 247, 328, 605
CviQI GTAC 1 cut(s) 409
DdeI CTNAG 2 cut(s) 251, 333
DpnI GATC 3 cut(s) 179, 610, 614
DpnII GATC 3 cut(s) 177, 608, 612
DriI GACNNNNNGTC 1 cut(s) 567
EaeI YGGCCR 1 cut(s) 23
Eam1104I CTCTTC 1 cut(s) 381
Eam1105I GACNNNNNGTC 1 cut(s) 567
EarI CTCTTC 1 cut(s) 381
Eco130I CCWWGG 1 cut(s) 30
Eco47I GGWCC 1 cut(s) 397
Eco72I CACGTG 1 cut(s) 403
EcoT14I CCWWGG 1 cut(s) 30
ErhI CCWWGG 1 cut(s) 30
Esp3I CGTCTC 1 cut(s) 529
FaeI CATG 5 cut(s) 53, 241, 250, 331, 608
FaiI YATR 8 cut(s) 51, 80, 228, 239, 248, 329, 464, 606
FaqI GGGAC 1 cut(s) 410
FatI CATG 5 cut(s) 49, 237, 246, 327, 604
FblI GTMKAC 1 cut(s) 99
FokI GGATG 1 cut(s) 13
FspBI CTAG 2 cut(s) 95, 315
GlaI GCGC 3 cut(s) 517, 519, 545
HaeIII GGCC 1 cut(s) 25
HapII CCGG 2 cut(s) 195, 439
HhaI GCGC 3 cut(s) 518, 520, 546
Hin1II CATG 5 cut(s) 53, 241, 250, 331, 608
Hin6I GCGC 3 cut(s) 516, 518, 544
HinP1I GCGC 3 cut(s) 516, 518, 544
HincII GTYRAC 1 cut(s) 342
HindII GTYRAC 1 cut(s) 342
HinfI GANTC 1 cut(s) 183
HpaI GTTAAC 1 cut(s) 342
HpaII CCGG 2 cut(s) 195, 439
HphI GGTGA 1 cut(s) 157
Hpy166II GTNNAC 3 cut(s) 59, 100, 342
Hpy188I TCNGA 3 cut(s) 182, 458, 626
Hpy188III TCNNGA 1 cut(s) 175
Hpy8I GTNNAC 3 cut(s) 59, 100, 342
HpyAV CCTTC 1 cut(s) 139
HpyCH4III ACNGT 3 cut(s) 204, 552, 565
HpyCH4IV ACGT 5 cut(s) 61, 233, 402, 411, 486
HpyCH4V TGCA 1 cut(s) 107
HpyF10VI GCNNNNNNNGC 5 cut(s) 261, 270, 284, 388, 526
HpyF3I CTNAG 2 cut(s) 251, 333
HpySE526I ACGT 5 cut(s) 61, 233, 402, 411, 486
Hsp92II CATG 5 cut(s) 53, 241, 250, 331, 608
HspAI GCGC 3 cut(s) 516, 518, 544
KspAI GTTAAC 1 cut(s) 342
Kzo9I GATC 3 cut(s) 177, 608, 612
LmnI GCTCC 1 cut(s) 284
LpnPI CCDG 8 cut(s) 57, 188, 208, 452, 455, 505, 572, 602
LweI GCATC 1 cut(s) 529
MaeI CTAG 2 cut(s) 95, 315
MaeII ACGT 5 cut(s) 61, 233, 402, 411, 486
MaeIII GTNAC 1 cut(s) 412
MalI GATC 3 cut(s) 179, 610, 614
MboI GATC 3 cut(s) 177, 608, 612
MboII GAAGA 3 cut(s) 64, 198, 368
MfeI CAATTG 1 cut(s) 594
MlsI TGGCCA 1 cut(s) 25
MluCI AATT 1 cut(s) 594
MluNI TGGCCA 1 cut(s) 25
MmeI TCCRAC 1 cut(s) 609
MnlI CCTC 2 cut(s) 133, 173
Mox20I TGGCCA 1 cut(s) 25
MscI TGGCCA 1 cut(s) 25
MseI TTAA 1 cut(s) 341
MslI CAYNNNNRTG 3 cut(s) 54, 236, 439
Msp20I TGGCCA 1 cut(s) 25
MspI CCGG 2 cut(s) 195, 439
MunI CAATTG 1 cut(s) 594
Mva1269I GAATGC 1 cut(s) 546
MvnI CGCG 2 cut(s) 516, 518
MwoI GCNNNNNNNGC 5 cut(s) 261, 270, 284, 388, 526
NdeII GATC 3 cut(s) 177, 608, 612
NlaIII CATG 5 cut(s) 53, 241, 250, 331, 608
NlaIV GGNNCC 1 cut(s) 398
NmuCI GTSAC 1 cut(s) 412
NspI RCATGY 1 cut(s) 53
OliI CACNNNNGTG 1 cut(s) 439
PauI GCGCGC 1 cut(s) 516
PciI ACATGT 1 cut(s) 49
PcsI WCGNNNNNNNCGW 1 cut(s) 408
PctI GAATGC 1 cut(s) 546
PfeI GAWTC 1 cut(s) 183
Pfl23II CGTACG 1 cut(s) 408
PflMI CCANNNNNTGG 1 cut(s) 393
PmaCI CACGTG 1 cut(s) 403
PmlI CACGTG 1 cut(s) 403
Ppu21I YACGTR 2 cut(s) 403, 412
PscI ACATGT 1 cut(s) 49
PspCI CACGTG 1 cut(s) 403
PspLI CGTACG 1 cut(s) 408
PspN4I GGNNCC 1 cut(s) 398
PspPI GGNCC 1 cut(s) 397
PteI GCGCGC 1 cut(s) 516
RsaI GTAC 1 cut(s) 410
RsaNI GTAC 1 cut(s) 409
RseI CAYNNNNRTG 3 cut(s) 54, 236, 439
SaqAI TTAA 1 cut(s) 341
Sau3AI GATC 3 cut(s) 177, 608, 612
Sau96I GGNCC 1 cut(s) 397
SfaNI GCATC 1 cut(s) 529
SgrAI CRCCGGYG 1 cut(s) 438
SinI GGWCC 1 cut(s) 397
SmiMI CAYNNNNRTG 3 cut(s) 54, 236, 439
Sse9I AATT 1 cut(s) 594
SsiI CCGC 2 cut(s) 13, 41
SspMI CTAG 2 cut(s) 95, 315
StyI CCWWGG 1 cut(s) 30
TaaI ACNGT 3 cut(s) 204, 552, 565
TaiI ACGT 5 cut(s) 64, 236, 405, 414, 489
TaqI TCGA 1 cut(s) 611
TasI AATT 1 cut(s) 594
TfiI GAWTC 1 cut(s) 183
Tru1I TTAA 1 cut(s) 341
Tru9I TTAA 1 cut(s) 341
TscAI CASTG 3 cut(s) 61, 499, 555
TseFI GTSAC 1 cut(s) 412
Tsp45I GTSAC 1 cut(s) 412
TspDTI ATGAA 2 cut(s) 136, 226
TspGWI ACGGA 1 cut(s) 632
TspRI CASTG 3 cut(s) 61, 499, 555
Van91I CCANNNNNTGG 1 cut(s) 393
VpaK11BI GGWCC 1 cut(s) 397
XceI RCATGY 1 cut(s) 53
XcmI CCANNNNNNNNNTGG 1 cut(s) 491
XmiI GTMKAC 1 cut(s) 99
XspI CTAG 2 cut(s) 95, 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.