Rh2CG150700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000574
Physical Location & Seq
Forward (+)
13101162 .. 13101806
645 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG150700.1

Sequence Viewer

Length: 645 bp
ATGGCTGAATCCCGCCATCAATGGCCATCCTTGCTCTTACAGCCTGAACGTGTACGTGAACGTGATATTATCTTTGTCATCTTCAACATTGTTCTAGTAGACTTTGCAAGACAAACAGTCCCCTCCACCTTCGCCATTTTCACTTTCATCGTTCCAATACTCCTCACCTTTATCCAGATCAGATTCCCAGCCGCCGGAATACTGTCTTCTCCATTTGAAACCCACCATACCAAGTTCATGGTAGCCATGCTCAGCTTACTTGGCTTCTGTTGCTTTGCCATTGGAGCTACTCAAAACTTCTTCCCGACTCGTCACGCTGCAAAGCTTCGCATGGCTATGAATTTAACAGCTTCGCTCTCAGTGGCTTCACTTGTTTCTCTTTTGCTTCCCAAGCCGTGGGACCAAGTGCCGTACGTGACCTACTCCTTGTATTTTACAGGCCAGTGTCTTGGGTTAGTCAGAAAGATATTTCTGACTTATTACCACCACGTTGCAAATGGATTTGTGCGTACCTTACCCGCGCATCAACAGCAGTTGAGAAGAACGCGCCCACCGTTGTTGCCGCTGACAGTCAGTCTGCCCAATATCTCCGACCAGCCAATTGCGAACCATGGATCGATCACCGAAGTCAGAACCTTCCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

214

Amino Acids

24.32

Weight (kDa)

10.11

Isoelectric Point (pI)

46.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 396
AccI GTMKAC 1 cut(s) 99
AccII CGCG 2 cut(s) 521, 547
AciI CCGC 4 cut(s) 13, 192, 519, 563
AclWI GGATC 1 cut(s) 622
AcoI YGGCCR 1 cut(s) 23
AcsI RAATTY 1 cut(s) 340
AfaI GTAC 3 cut(s) 54, 413, 511
AfiI CCNNNNNNNGG 2 cut(s) 194, 396
AflIII ACRYGT 1 cut(s) 49
AgsI TTSAA 2 cut(s) 85, 218
AhdI GACNNNNNGTC 2 cut(s) 116, 573
AluBI AGCT 4 cut(s) 255, 287, 325, 350
AluI AGCT 4 cut(s) 255, 287, 325, 350
AlwI GGATC 1 cut(s) 622
AoxI GGCC 2 cut(s) 23, 439
ApeKI GCWGC 1 cut(s) 317
ApoI RAATTY 1 cut(s) 340
AspLEI GCGC 2 cut(s) 523, 549
AspS9I GGNCC 1 cut(s) 400
AsuHPI GGTGA 2 cut(s) 157, 613
AvaII GGWCC 1 cut(s) 400
BalI TGGCCA 1 cut(s) 25
BbsI GAAGAC 1 cut(s) 198
BbvI GCAGC 1 cut(s) 304
BccI CCATC 2 cut(s) 24, 34
BceAI ACGGC 2 cut(s) 379, 394
BfaI CTAG 1 cut(s) 95
BisI GCNGC 3 cut(s) 192, 318, 563
BlpI GCTNAGC 1 cut(s) 251
BlsI GCNGC 3 cut(s) 193, 319, 564
Bme18I GGWCC 1 cut(s) 400
BmeRI GACNNNNNGTC 2 cut(s) 116, 573
BmgT120I GGNCC 1 cut(s) 400
BmiI GGNNCC 1 cut(s) 401
BmsI GCATC 1 cut(s) 532
BpiI GAAGAC 1 cut(s) 198
Bpu1102I GCTNAGC 1 cut(s) 251
Bsa29I ATCGAT 1 cut(s) 617
BsaAI YACGTR 2 cut(s) 56, 415
BsaJI CCNNGG 2 cut(s) 395, 610
Bsc4I CCNNNNNNNGG 2 cut(s) 194, 396
Bse1I ACTGG 1 cut(s) 442
BseCI ATCGAT 1 cut(s) 617
BseDI CCNNGG 2 cut(s) 395, 610
BseGI GGATG 1 cut(s) 26
BseLI CCNNNNNNNGG 2 cut(s) 194, 396
BseMII CTCAG 2 cut(s) 265, 372
BseNI ACTGG 1 cut(s) 442
BseRI GAGGAG 1 cut(s) 152
BseXI GCAGC 1 cut(s) 304
BseYI CCCAGC 1 cut(s) 187
Bsh1236I CGCG 2 cut(s) 521, 547
BshFI GGCC 2 cut(s) 25, 441
BshVI ATCGAT 1 cut(s) 617
BsiSI CCGG 1 cut(s) 195
BsiWI CGTACG 1 cut(s) 411
BslFI GGGAC 2 cut(s) 104, 413
BslI CCNNNNNNNGG 2 cut(s) 194, 396
BsmFI GGGAC 2 cut(s) 104, 413
BsnI GGCC 2 cut(s) 25, 441
Bsp143I GATC 3 cut(s) 177, 614, 618
Bsp1720I GCTNAGC 1 cut(s) 251
Bsp19I CCATGG 1 cut(s) 610
BspACI CCGC 4 cut(s) 13, 192, 519, 563
BspANI GGCC 2 cut(s) 25, 441
BspCNI CTCAG 2 cut(s) 264, 371
BspDI ATCGAT 1 cut(s) 617
BspFNI CGCG 2 cut(s) 521, 547
BspLI GGNNCC 1 cut(s) 401
BspPI GGATC 1 cut(s) 622
BsrI ACTGG 1 cut(s) 442
BssECI CCNNGG 2 cut(s) 395, 610
BssMI GATC 3 cut(s) 177, 614, 618
BssT1I CCWWGG 1 cut(s) 610
Bst4CI ACNGT 4 cut(s) 118, 204, 555, 571
BstBAI YACGTR 2 cut(s) 56, 415
BstDEI CTNAG 2 cut(s) 251, 358
BstDSI CCRYGG 2 cut(s) 395, 610
BstF5I GGATG 1 cut(s) 26
BstFNI CGCG 2 cut(s) 521, 547
BstHHI GCGC 2 cut(s) 523, 549
BstKTI GATC 3 cut(s) 180, 617, 621
BstMBI GATC 3 cut(s) 177, 614, 618
BstMWI GCNNNNNNNGC 7 cut(s) 31, 40, 261, 270, 284, 391, 529
BstUI CGCG 2 cut(s) 521, 547
BstV1I GCAGC 1 cut(s) 304
BstV2I GAAGAC 1 cut(s) 198
BstXI CCANNNNNNTGG 2 cut(s) 238, 449
Bsu15I ATCGAT 1 cut(s) 617
BsuRI GGCC 2 cut(s) 25, 441
BsuTUI ATCGAT 1 cut(s) 617
BtgI CCRYGG 2 cut(s) 395, 610
BtsCI GGATG 1 cut(s) 26
BtsIMutI CAGTG 2 cut(s) 366, 449
CfoI GCGC 2 cut(s) 523, 549
Cfr13I GGNCC 1 cut(s) 400
ClaI ATCGAT 1 cut(s) 617
Csp6I GTAC 3 cut(s) 53, 412, 510
CspCI CAANNNNNGTGG 2 cut(s) 540, 575
CviAII CATG 4 cut(s) 238, 247, 331, 611
CviQI GTAC 3 cut(s) 53, 412, 510
DdeI CTNAG 2 cut(s) 251, 358
DpnI GATC 3 cut(s) 179, 616, 620
DpnII GATC 3 cut(s) 177, 614, 618
DriI GACNNNNNGTC 2 cut(s) 116, 573
EaeI YGGCCR 1 cut(s) 23
Eam1105I GACNNNNNGTC 2 cut(s) 116, 573
Eco130I CCWWGG 1 cut(s) 610
Eco47I GGWCC 1 cut(s) 400
EcoT14I CCWWGG 1 cut(s) 610
ErhI CCWWGG 1 cut(s) 610
FaeI CATG 4 cut(s) 241, 250, 334, 614
FaiI YATR 6 cut(s) 228, 239, 248, 332, 338, 612
FaqI GGGAC 2 cut(s) 104, 413
FatI CATG 4 cut(s) 237, 246, 330, 610
FauI CCCGC 2 cut(s) 20, 526
FblI GTMKAC 1 cut(s) 99
Fnu4HI GCNGC 3 cut(s) 192, 318, 563
FokI GGATG 1 cut(s) 13
Fsp4HI GCNGC 3 cut(s) 192, 318, 563
FspBI CTAG 1 cut(s) 95
GlaI GCGC 2 cut(s) 522, 548
GluI GCNGC 3 cut(s) 192, 318, 563
GsaI CCCAGC 1 cut(s) 191
HaeIII GGCC 2 cut(s) 25, 441
HapII CCGG 1 cut(s) 195
HhaI GCGC 2 cut(s) 523, 549
Hin1II CATG 4 cut(s) 241, 250, 334, 614
Hin6I GCGC 2 cut(s) 521, 547
HinP1I GCGC 2 cut(s) 521, 547
HindIII AAGCTT 1 cut(s) 323
HinfI GANTC 3 cut(s) 8, 183, 307
HpaII CCGG 1 cut(s) 195
HphI GGTGA 2 cut(s) 157, 613
Hpy166II GTNNAC 3 cut(s) 53, 59, 100
Hpy188I TCNGA 5 cut(s) 182, 461, 474, 592, 632
Hpy188III TCNNGA 2 cut(s) 175, 304
Hpy8I GTNNAC 3 cut(s) 53, 59, 100
HpyAV CCTTC 1 cut(s) 139
HpyCH4III ACNGT 4 cut(s) 118, 204, 555, 571
HpyCH4IV ACGT 5 cut(s) 49, 55, 61, 414, 489
HpyCH4V TGCA 3 cut(s) 107, 320, 494
HpyF10VI GCNNNNNNNGC 7 cut(s) 31, 40, 261, 270, 284, 391, 529
HpyF3I CTNAG 2 cut(s) 251, 358
HpySE526I ACGT 5 cut(s) 49, 55, 61, 414, 489
Hsp92II CATG 4 cut(s) 241, 250, 334, 614
HspAI GCGC 2 cut(s) 521, 547
Kzo9I GATC 3 cut(s) 177, 614, 618
LmnI GCTCC 1 cut(s) 284
LpnPI CCDG 7 cut(s) 57, 188, 201, 208, 423, 455, 608
Lsp1109I GCAGC 1 cut(s) 304
LweI GCATC 1 cut(s) 532
MaeI CTAG 1 cut(s) 95
MaeII ACGT 5 cut(s) 49, 55, 61, 414, 489
MaeIII GTNAC 2 cut(s) 311, 415
MalI GATC 3 cut(s) 179, 616, 620
MboI GATC 3 cut(s) 177, 614, 618
MboII GAAGA 4 cut(s) 73, 198, 292, 552
MfeI CAATTG 1 cut(s) 600
MlsI TGGCCA 1 cut(s) 25
MluCI AATT 2 cut(s) 340, 600
MluNI TGGCCA 1 cut(s) 25
MlyI GAGTC 1 cut(s) 301
MmeI TCCRAC 1 cut(s) 615
MnlI CCTC 2 cut(s) 133, 173
Mox20I TGGCCA 1 cut(s) 25
MscI TGGCCA 1 cut(s) 25
MseI TTAA 1 cut(s) 344
MslI CAYNNNNRTG 1 cut(s) 335
Msp20I TGGCCA 1 cut(s) 25
MspA1I CMGCKG 1 cut(s) 565
MspI CCGG 1 cut(s) 195
MunI CAATTG 1 cut(s) 600
MvnI CGCG 2 cut(s) 521, 547
MwoI GCNNNNNNNGC 7 cut(s) 31, 40, 261, 270, 284, 391, 529
NcoI CCATGG 1 cut(s) 610
NdeII GATC 3 cut(s) 177, 614, 618
NlaIII CATG 4 cut(s) 241, 250, 334, 614
NlaIV GGNNCC 1 cut(s) 401
NmuCI GTSAC 2 cut(s) 311, 415
PcsI WCGNNNNNNNCGW 1 cut(s) 551
PfeI GAWTC 2 cut(s) 8, 183
Pfl23II CGTACG 1 cut(s) 411
PflMI CCANNNNNTGG 1 cut(s) 396
PkrI GCNGC 3 cut(s) 193, 319, 564
PleI GAGTC 1 cut(s) 301
PpsI GAGTC 1 cut(s) 301
Ppu21I YACGTR 2 cut(s) 56, 415
PspFI CCCAGC 1 cut(s) 187
PspLI CGTACG 1 cut(s) 411
PspN4I GGNNCC 1 cut(s) 401
PspPI GGNCC 1 cut(s) 400
RsaI GTAC 3 cut(s) 54, 413, 511
RsaNI GTAC 3 cut(s) 53, 412, 510
RseI CAYNNNNRTG 1 cut(s) 335
SaqAI TTAA 1 cut(s) 344
SatI GCNGC 3 cut(s) 192, 318, 563
Sau3AI GATC 3 cut(s) 177, 614, 618
Sau96I GGNCC 1 cut(s) 400
SchI GAGTC 1 cut(s) 301
SfaNI GCATC 1 cut(s) 532
SinI GGWCC 1 cut(s) 400
SmiMI CAYNNNNRTG 1 cut(s) 335
Sse9I AATT 2 cut(s) 340, 600
SsiI CCGC 4 cut(s) 13, 192, 519, 563
SspMI CTAG 1 cut(s) 95
StyI CCWWGG 1 cut(s) 610
TaaI ACNGT 4 cut(s) 118, 204, 555, 571
TaiI ACGT 5 cut(s) 52, 58, 64, 417, 492
TaqI TCGA 1 cut(s) 617
TasI AATT 2 cut(s) 340, 600
TauI GCSGC 2 cut(s) 194, 565
TfiI GAWTC 2 cut(s) 8, 183
Tru1I TTAA 1 cut(s) 344
Tru9I TTAA 1 cut(s) 344
TscAI CASTG 2 cut(s) 366, 449
TseFI GTSAC 2 cut(s) 311, 415
TseI GCWGC 1 cut(s) 317
Tsp45I GTSAC 2 cut(s) 311, 415
TspDTI ATGAA 3 cut(s) 136, 226, 353
TspRI CASTG 2 cut(s) 366, 449
Van91I CCANNNNNTGG 1 cut(s) 396
VpaK11BI GGWCC 1 cut(s) 400
XapI RAATTY 1 cut(s) 340
XcmI CCANNNNNNNNNTGG 1 cut(s) 494
XmiI GTMKAC 1 cut(s) 99
XspI CTAG 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.