Rh1BG242100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000574
Physical Location & Seq
Forward (+)
36550412 .. 36550954
543 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG242100.1

Sequence Viewer

Length: 543 bp
ATGGCCGATCTTCAGTATCAAATGCGCCCAGCCCTTATCGTCCACGAACATAATTCCTTTACTATCACCTTCAACATTCTTCTAATCAATTTCGCAGCTTCCACTTCTACTCATGCCATTCTCGCTTTCCTCGTCCCCATACTCGTCGCCTTTATTCAAATCAAGTTCCCAGGAATTTCAGTACTGTCTTCTCCATTCGAAACACATAGTAACACCACCGTCGTCGCCATTGCAAGCTTACTTGCATATTGCTTGATTGTTGGGGTTAGGGTAAGGTTTCCAGCTAGGGCTCGTACTTGGTCTAGATTTGCCCTTTTGTTTTCTGGTTTGCTCTCCGTTGCTTCACTGCTTTCAATTTTGCTCCCAGATTCTTGGAACCATGTGCCATATATGATGTACTTCATTTATGTCATAGGGGAGGGTTTCCAATTAGTCCGAATGCTTTGTCGACAAGCGGGCCGACGTCAAATGAGATCGAGGCGCACACTGCTCCCTTTGAGGGTAGAGCTAGCGGGGATTCATGAGTTTGCAGCACGTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

180

Amino Acids

20.28

Weight (kDa)

10.79

Isoelectric Point (pI)

48.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 466
AccI GTMKAC 1 cut(s) 448
AciI CCGC 2 cut(s) 455, 512
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 174
AcvI CACGTG 1 cut(s) 536
AcyI GRCGYC 1 cut(s) 463
AfaI GTAC 3 cut(s) 183, 295, 398
AfiI CCNNNNNNNGG 1 cut(s) 499
AgsI TTSAA 3 cut(s) 73, 158, 354
AjnI CCWGG 1 cut(s) 169
AluBI AGCT 4 cut(s) 98, 237, 284, 508
AluI AGCT 4 cut(s) 98, 237, 284, 508
AoxI GGCC 2 cut(s) 3, 457
ApeKI GCWGC 2 cut(s) 95, 530
ApoI RAATTY 1 cut(s) 174
ArsI GACNNNNNNTTYG 2 cut(s) 430, 462
AspLEI GCGC 2 cut(s) 27, 483
AspS9I GGNCC 1 cut(s) 457
AsuHPI GGTGA 1 cut(s) 58
AsuII TTCGAA 1 cut(s) 198
AsuNHI GCTAGC 1 cut(s) 508
BanII GRGCYC 1 cut(s) 292
BbrPI CACGTG 1 cut(s) 536
BbsI GAAGAC 1 cut(s) 180
BbvI GCAGC 1 cut(s) 107
BciT130I CCWGG 1 cut(s) 171
BfaI CTAG 3 cut(s) 285, 303, 509
BisI GCNGC 2 cut(s) 96, 531
BlsI GCNGC 2 cut(s) 97, 532
BmcAI AGTACT 1 cut(s) 183
Bme1390I CCNGG 1 cut(s) 171
BmgT120I GGNCC 1 cut(s) 457
BmiI GGNNCC 1 cut(s) 377
BmrFI CCNGG 1 cut(s) 171
BmtI GCTAGC 1 cut(s) 512
BpiI GAAGAC 1 cut(s) 180
Bpu14I TTCGAA 1 cut(s) 198
BsaAI YACGTR 1 cut(s) 536
BsaHI GRCGYC 1 cut(s) 463
BsaJI CCNNGG 1 cut(s) 169
Bsc4I CCNNNNNNNGG 1 cut(s) 499
Bse3DI GCAATG 1 cut(s) 228
BseBI CCWGG 1 cut(s) 171
BseDI CCNNGG 1 cut(s) 169
BseLI CCNNNNNNNGG 1 cut(s) 499
BseMI GCAATG 1 cut(s) 228
BseXI GCAGC 1 cut(s) 107
BseYI CCCAGC 1 cut(s) 28
BshFI GGCC 2 cut(s) 5, 459
BslFI GGGAC 1 cut(s) 119
BslI CCNNNNNNNGG 1 cut(s) 499
BsmFI GGGAC 1 cut(s) 119
BsmI GAATGC 1 cut(s) 444
BsnI GGCC 2 cut(s) 5, 459
Bsp119I TTCGAA 1 cut(s) 198
Bsp1286I GDGCHC 1 cut(s) 292
Bsp143I GATC 2 cut(s) 7, 473
BspACI CCGC 2 cut(s) 455, 512
BspANI GGCC 2 cut(s) 5, 459
BspHI TCATGA 1 cut(s) 520
BspLI GGNNCC 1 cut(s) 377
BspOI GCTAGC 1 cut(s) 512
BspT104I TTCGAA 1 cut(s) 198
BsrDI GCAATG 1 cut(s) 228
BssECI CCNNGG 1 cut(s) 169
BssMI GATC 2 cut(s) 7, 473
BssNI GRCGYC 1 cut(s) 463
Bst2UI CCWGG 1 cut(s) 171
Bst4CI ACNGT 2 cut(s) 186, 220
BstACI GRCGYC 1 cut(s) 463
BstAPI GCANNNNNTGC 1 cut(s) 536
BstBAI YACGTR 1 cut(s) 536
BstBI TTCGAA 1 cut(s) 198
BstC8I GCNNGC 3 cut(s) 235, 457, 510
BstHHI GCGC 2 cut(s) 27, 483
BstKTI GATC 2 cut(s) 10, 476
BstMBI GATC 2 cut(s) 7, 473
BstMWI GCNNNNNNNGC 3 cut(s) 122, 487, 536
BstNI CCWGG 1 cut(s) 171
BstSCI CCNGG 1 cut(s) 169
BstV1I GCAGC 1 cut(s) 107
BstV2I GAAGAC 1 cut(s) 180
BstXI CCANNNNNNTGG 1 cut(s) 372
BsuRI GGCC 2 cut(s) 5, 459
BtsI GCAGTG 2 cut(s) 344, 485
BtsIMutI CAGTG 2 cut(s) 344, 485
Cac8I GCNNGC 3 cut(s) 235, 457, 510
CciI TCATGA 1 cut(s) 520
CfoI GCGC 2 cut(s) 27, 483
Cfr13I GGNCC 1 cut(s) 457
Csp6I GTAC 3 cut(s) 182, 294, 397
CviAII CATG 4 cut(s) 113, 380, 521, 540
CviJI RGCY 8 cut(s) 5, 32, 98, 237, 284, 290, 459, 508
CviKI_1 RGCY 8 cut(s) 5, 32, 98, 237, 284, 290, 459, 508
CviQI GTAC 3 cut(s) 182, 294, 397
DpnI GATC 2 cut(s) 9, 475
DpnII GATC 2 cut(s) 7, 473
EaeI YGGCCR 1 cut(s) 3
Eco24I GRGCYC 1 cut(s) 292
Eco72I CACGTG 1 cut(s) 536
EcoRII CCWGG 1 cut(s) 169
EcoT38I GRGCYC 1 cut(s) 292
FaeI CATG 4 cut(s) 116, 383, 524, 543
FaqI GGGAC 1 cut(s) 119
FatI CATG 4 cut(s) 112, 379, 520, 539
FauI CCCGC 2 cut(s) 448, 505
FblI GTMKAC 1 cut(s) 448
Fnu4HI GCNGC 2 cut(s) 96, 531
FriOI GRGCYC 1 cut(s) 292
Fsp4HI GCNGC 2 cut(s) 96, 531
FspBI CTAG 3 cut(s) 285, 303, 509
GlaI GCGC 2 cut(s) 26, 482
GluI GCNGC 2 cut(s) 96, 531
GsaI CCCAGC 1 cut(s) 32
HaeIII GGCC 2 cut(s) 5, 459
HhaI GCGC 2 cut(s) 27, 483
Hin1I GRCGYC 1 cut(s) 463
Hin1II CATG 4 cut(s) 116, 383, 524, 543
Hin6I GCGC 2 cut(s) 25, 481
HinP1I GCGC 2 cut(s) 25, 481
HincII GTYRAC 1 cut(s) 449
HindII GTYRAC 1 cut(s) 449
HindIII AAGCTT 1 cut(s) 235
HinfI GANTC 2 cut(s) 368, 517
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 2 cut(s) 43, 449
Hpy188I TCNGA 1 cut(s) 437
Hpy188III TCNNGA 2 cut(s) 303, 521
Hpy8I GTNNAC 2 cut(s) 43, 449
Hpy99I CGWCG 4 cut(s) 149, 224, 227, 465
HpyAV CCTTC 1 cut(s) 79
HpyCH4III ACNGT 2 cut(s) 186, 220
HpyCH4IV ACGT 2 cut(s) 463, 535
HpyCH4V TGCA 4 cut(s) 233, 245, 530, 539
HpyF10VI GCNNNNNNNGC 3 cut(s) 122, 487, 536
HpySE526I ACGT 2 cut(s) 463, 535
Hsp92I GRCGYC 1 cut(s) 463
Hsp92II CATG 4 cut(s) 116, 383, 524, 543
HspAI GCGC 2 cut(s) 25, 481
Kzo9I GATC 2 cut(s) 7, 473
LmnI GCTCC 2 cut(s) 366, 495
LpnPI CCDG 6 cut(s) 42, 156, 183, 294, 309, 378
Lsp1109I GCAGC 1 cut(s) 107
MaeI CTAG 3 cut(s) 285, 303, 509
MaeII ACGT 2 cut(s) 463, 535
MaeIII GTNAC 1 cut(s) 209
MalI GATC 2 cut(s) 9, 475
MboI GATC 2 cut(s) 7, 473
MboII GAAGA 2 cut(s) 71, 180
MhlI GDGCHC 1 cut(s) 292
MluCI AATT 5 cut(s) 52, 88, 174, 354, 428
MnlI CCTC 4 cut(s) 140, 412, 471, 492
MslI CAYNNNNRTG 1 cut(s) 538
MspR9I CCNGG 1 cut(s) 171
Mva1269I GAATGC 1 cut(s) 444
MvaI CCWGG 1 cut(s) 171
MwoI GCNNNNNNNGC 3 cut(s) 122, 487, 536
NdeII GATC 2 cut(s) 7, 473
NheI GCTAGC 1 cut(s) 508
NlaIII CATG 4 cut(s) 116, 383, 524, 543
NlaIV GGNNCC 1 cut(s) 377
NspV TTCGAA 1 cut(s) 198
PagI TCATGA 1 cut(s) 520
PcsI WCGNNNNNNNCGW 1 cut(s) 129
PctI GAATGC 1 cut(s) 444
PfeI GAWTC 2 cut(s) 368, 517
PkrI GCNGC 2 cut(s) 97, 532
PmaCI CACGTG 1 cut(s) 536
PmlI CACGTG 1 cut(s) 536
Ppu21I YACGTR 1 cut(s) 536
Psp6I CCWGG 1 cut(s) 169
PspCI CACGTG 1 cut(s) 536
PspFI CCCAGC 1 cut(s) 28
PspGI CCWGG 1 cut(s) 169
PspN4I GGNNCC 1 cut(s) 377
PspPI GGNCC 1 cut(s) 457
RsaI GTAC 3 cut(s) 183, 295, 398
RsaNI GTAC 3 cut(s) 182, 294, 397
RseI CAYNNNNRTG 1 cut(s) 538
SalI GTCGAC 1 cut(s) 447
SatI GCNGC 2 cut(s) 96, 531
Sau3AI GATC 2 cut(s) 7, 473
Sau96I GGNCC 1 cut(s) 457
ScaI AGTACT 1 cut(s) 183
ScrFI CCNGG 1 cut(s) 171
SduI GDGCHC 1 cut(s) 292
SetI ASST 8 cut(s) 71, 100, 239, 278, 286, 466, 510, 538
SfuI TTCGAA 1 cut(s) 198
SmiMI CAYNNNNRTG 1 cut(s) 538
Sse9I AATT 5 cut(s) 52, 88, 174, 354, 428
SsiI CCGC 2 cut(s) 455, 512
SspMI CTAG 3 cut(s) 285, 303, 509
StyD4I CCNGG 1 cut(s) 169
TaaI ACNGT 2 cut(s) 186, 220
TaiI ACGT 2 cut(s) 466, 538
TaqI TCGA 3 cut(s) 198, 448, 476
TasI AATT 5 cut(s) 52, 88, 174, 354, 428
TatI WGTACW 2 cut(s) 181, 396
TfiI GAWTC 2 cut(s) 368, 517
TscAI CASTG 2 cut(s) 351, 492
TseI GCWGC 2 cut(s) 95, 530
TspDTI ATGAA 2 cut(s) 391, 509
TspGWI ACGGA 1 cut(s) 325
TspRI CASTG 2 cut(s) 351, 492
XapI RAATTY 1 cut(s) 174
XbaI TCTAGA 1 cut(s) 302
XmiI GTMKAC 1 cut(s) 448
XspI CTAG 3 cut(s) 285, 303, 509
ZraI GACGTC 1 cut(s) 464
ZrmI AGTACT 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.