RLG00000017058

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000574
Physical Location & Seq
Forward (+)
12469845 .. 12471236
1392 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017058

Sequence Viewer

Length: 711 bp
ATGGGAGAGCGCTTTAGGATTCTGGAGTACGAAGCCAAGGAAGCAGGAGTGGGAGAGAGGGTCGAAGATCCTAACCCAGAAACCAAATATTCCCCTTGTCTGACTCTTCCCAAATTTCCGATTTCACCTCCTCCTGCTGCTCTCTTCTGTCGTCGTCATCTTCAACGTTGTTCGAGTAGATTTCGCAAGACAAGCGATTCCACCTTTGCCATTTTCACTTTCATGGTGCCAACACTTCTCACCTTCATCCAGATCAAATTCCCGGCTGTCGGAACTCTACCTCTCCCATTTGAAACCCACCACACCAAGTTCATGGTTGCCATTCTCAGCTTACTTGCCTTCTGTTGCTTTACCATTGGAGCCACCCAAACTAACTTGTTCCCAAATCACGCTGCAAAACTTTCTATGGCCATCAAGTGTACGGCTTCGCTCTCTGTGGCTTCGCTTCTATCTCTTTTGCTTCCCAAGCCTTGGGACCTAGTGTCGTACGTGACCTACTTCTTGTATGCATGCCACTGTCTCGGCCTACTCAGAAATATTAATCTGGCTTATTACAACGACATTGCTTGTGGATTCGTGCGTTGCTCGCGCGCCCGTCTACAGCAGTTGACACAAACGCGCCGCCCACTGTTGCCGATGACAGTTACAGATATCTCCAACTACCCGATAACCAACCGTGGATCAAGCACTGAAGTCAGAACAGTCCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

237

Amino Acids

26.58

Weight (kDa)

9.35

Isoelectric Point (pI)

50.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 226
AccB7I CCANNNNNTGG 1 cut(s) 471
AccI GTMKAC 1 cut(s) 598
AccII CGCG 3 cut(s) 589, 591, 619
AciI CCGC 1 cut(s) 622
AclI AACGTT 1 cut(s) 166
AclWI GGATC 2 cut(s) 62, 688
AcoI YGGCCR 1 cut(s) 408
AcsI RAATTY 2 cut(s) 113, 257
AcuI CTGAAG 1 cut(s) 711
AfaI GTAC 3 cut(s) 29, 421, 488
AfeI AGCGCT 1 cut(s) 11
AfiI CCNNNNNNNGG 2 cut(s) 269, 471
AgsI TTSAA 2 cut(s) 164, 293
AhdI GACNNNNNGTC 1 cut(s) 481
AluBI AGCT 1 cut(s) 330
AluI AGCT 1 cut(s) 330
Alw26I GTCTC 1 cut(s) 524
AlwI GGATC 2 cut(s) 62, 688
Aor51HI AGCGCT 1 cut(s) 11
AoxI GGCC 2 cut(s) 408, 523
ApeKI GCWGC 2 cut(s) 137, 392
ApoI RAATTY 2 cut(s) 113, 257
AseI ATTAAT 1 cut(s) 540
AspLEI GCGC 4 cut(s) 12, 591, 593, 621
AspS9I GGNCC 1 cut(s) 475
AsuC2I CCSGG 1 cut(s) 263
AsuHPI GGTGA 2 cut(s) 117, 232
AvaII GGWCC 1 cut(s) 475
BalI TGGCCA 1 cut(s) 410
BanI GGYRCC 1 cut(s) 226
BbvI GCAGC 2 cut(s) 124, 379
BccI CCATC 1 cut(s) 419
BceAI ACGGC 1 cut(s) 438
BcnI CCSGG 1 cut(s) 263
BcoDI GTCTC 1 cut(s) 524
BfaI CTAG 1 cut(s) 479
BfmI CTRYAG 1 cut(s) 599
BfoI RGCGCY 1 cut(s) 13
BisI GCNGC 3 cut(s) 138, 393, 622
BlsI GCNGC 3 cut(s) 139, 394, 623
Bme1390I CCNGG 1 cut(s) 263
Bme18I GGWCC 1 cut(s) 475
BmeRI GACNNNNNGTC 1 cut(s) 481
BmgT120I GGNCC 1 cut(s) 475
BmiI GGNNCC 3 cut(s) 228, 361, 476
BmrFI CCNGG 1 cut(s) 263
BpmI CTGGAG 1 cut(s) 44
BpuMI CCSGG 1 cut(s) 263
BsaAI YACGTR 1 cut(s) 490
BsaJI CCNNGG 3 cut(s) 36, 470, 676
BsaXI ACNNNNNCTCC 2 cut(s) 45, 75
Bsc4I CCNNNNNNNGG 2 cut(s) 269, 471
Bse3DI GCAATG 1 cut(s) 561
BseDI CCNNGG 3 cut(s) 36, 470, 676
BseGI GGATG 1 cut(s) 246
BseLI CCNNNNNNNGG 2 cut(s) 269, 471
BseMI GCAATG 1 cut(s) 561
BseMII CTCAG 2 cut(s) 340, 544
BsePI GCGCGC 1 cut(s) 589
BseRI GAGGAG 1 cut(s) 120
BseXI GCAGC 2 cut(s) 124, 379
Bsh1236I CGCG 3 cut(s) 589, 591, 619
BshFI GGCC 2 cut(s) 410, 525
BshNI GGYRCC 1 cut(s) 226
BsiSI CCGG 1 cut(s) 263
BsiWI CGTACG 1 cut(s) 486
BslFI GGGAC 1 cut(s) 488
BslI CCNNNNNNNGG 2 cut(s) 269, 471
BsmAI GTCTC 1 cut(s) 524
BsmFI GGGAC 1 cut(s) 488
BsnI GGCC 2 cut(s) 410, 525
Bsp143I GATC 3 cut(s) 67, 252, 680
BspACI CCGC 1 cut(s) 622
BspANI GGCC 2 cut(s) 410, 525
BspCNI CTCAG 2 cut(s) 339, 543
BspFNI CGCG 3 cut(s) 589, 591, 619
BspLI GGNNCC 3 cut(s) 228, 361, 476
BspPI GGATC 2 cut(s) 62, 688
BspT107I GGYRCC 1 cut(s) 226
BsrDI GCAATG 1 cut(s) 561
BssECI CCNNGG 3 cut(s) 36, 470, 676
BssHII GCGCGC 1 cut(s) 589
BssMI GATC 3 cut(s) 67, 252, 680
BssT1I CCWWGG 2 cut(s) 36, 470
Bst4CI ACNGT 5 cut(s) 518, 630, 643, 677, 703
Bst6I CTCTTC 2 cut(s) 111, 149
BstBAI YACGTR 1 cut(s) 490
BstC8I GCNNGC 3 cut(s) 511, 587, 591
BstDEI CTNAG 2 cut(s) 326, 530
BstDSI CCRYGG 1 cut(s) 676
BstF5I GGATG 1 cut(s) 246
BstFNI CGCG 3 cut(s) 589, 591, 619
BstH2I RGCGCY 1 cut(s) 13
BstHHI GCGC 4 cut(s) 12, 591, 593, 621
BstKTI GATC 3 cut(s) 70, 255, 683
BstMAI GTCTC 1 cut(s) 524
BstMBI GATC 3 cut(s) 67, 252, 680
BstMWI GCNNNNNNNGC 4 cut(s) 41, 192, 466, 586
BstNSI RCATGY 1 cut(s) 513
BstSCI CCNGG 1 cut(s) 261
BstSFI CTRYAG 1 cut(s) 599
BstUI CGCG 3 cut(s) 589, 591, 619
BstV1I GCAGC 2 cut(s) 124, 379
BstX2I RGATCY 1 cut(s) 67
BstXI CCANNNNNNTGG 1 cut(s) 313
BstYI RGATCY 1 cut(s) 67
BsuRI GGCC 2 cut(s) 410, 525
BtgI CCRYGG 1 cut(s) 676
BtsCI GGATG 1 cut(s) 246
BtsIMutI CAGTG 3 cut(s) 514, 626, 687
Cac8I GCNNGC 3 cut(s) 511, 587, 591
CfoI GCGC 4 cut(s) 12, 591, 593, 621
Cfr13I GGNCC 1 cut(s) 475
Csp6I GTAC 3 cut(s) 28, 420, 487
CviAII CATG 3 cut(s) 223, 313, 510
CviQI GTAC 3 cut(s) 28, 420, 487
DdeI CTNAG 2 cut(s) 326, 530
DpnI GATC 3 cut(s) 69, 254, 682
DpnII GATC 3 cut(s) 67, 252, 680
DriI GACNNNNNGTC 1 cut(s) 481
EaeI YGGCCR 1 cut(s) 408
Eam1104I CTCTTC 2 cut(s) 111, 149
Eam1105I GACNNNNNGTC 1 cut(s) 481
EarI CTCTTC 2 cut(s) 111, 149
Eco130I CCWWGG 2 cut(s) 36, 470
Eco32I GATATC 1 cut(s) 652
Eco47I GGWCC 1 cut(s) 475
Eco47III AGCGCT 1 cut(s) 11
Eco57I CTGAAG 1 cut(s) 711
EcoO109I RGGNCCY 1 cut(s) 475
EcoRV GATATC 1 cut(s) 652
EcoT14I CCWWGG 2 cut(s) 36, 470
EcoT22I ATGCAT 1 cut(s) 511
ErhI CCWWGG 2 cut(s) 36, 470
FaeI CATG 3 cut(s) 226, 316, 513
FaiI YATR 5 cut(s) 224, 314, 407, 507, 511
FaqI GGGAC 1 cut(s) 488
FatI CATG 3 cut(s) 222, 312, 509
FblI GTMKAC 1 cut(s) 598
Fnu4HI GCNGC 3 cut(s) 138, 393, 622
FokI GGATG 1 cut(s) 233
Fsp4HI GCNGC 3 cut(s) 138, 393, 622
FspBI CTAG 1 cut(s) 479
GlaI GCGC 4 cut(s) 11, 590, 592, 620
GluI GCNGC 3 cut(s) 138, 393, 622
GsuI CTGGAG 1 cut(s) 44
HaeII RGCGCY 1 cut(s) 13
HaeIII GGCC 2 cut(s) 410, 525
HapII CCGG 1 cut(s) 263
HhaI GCGC 4 cut(s) 12, 591, 593, 621
Hin1II CATG 3 cut(s) 226, 316, 513
Hin6I GCGC 4 cut(s) 10, 589, 591, 619
HinP1I GCGC 4 cut(s) 10, 589, 591, 619
HincII GTYRAC 1 cut(s) 609
HindII GTYRAC 1 cut(s) 609
HinfI GANTC 4 cut(s) 19, 103, 197, 573
HpaII CCGG 1 cut(s) 263
HphI GGTGA 2 cut(s) 117, 232
Hpy166II GTNNAC 4 cut(s) 420, 599, 609, 706
Hpy188I TCNGA 5 cut(s) 102, 120, 272, 533, 698
Hpy188III TCNNGA 2 cut(s) 23, 250
Hpy8I GTNNAC 4 cut(s) 420, 599, 609, 706
Hpy99I CGWCG 1 cut(s) 156
HpyAV CCTTC 2 cut(s) 253, 349
HpyCH4III ACNGT 5 cut(s) 518, 630, 643, 677, 703
HpyCH4IV ACGT 2 cut(s) 166, 489
HpyCH4V TGCA 2 cut(s) 395, 509
HpyF10VI GCNNNNNNNGC 4 cut(s) 41, 192, 466, 586
HpyF3I CTNAG 2 cut(s) 326, 530
HpySE526I ACGT 2 cut(s) 166, 489
Hsp92II CATG 3 cut(s) 226, 316, 513
HspAI GCGC 4 cut(s) 10, 589, 591, 619
Kzo9I GATC 3 cut(s) 67, 252, 680
LmnI GCTCC 1 cut(s) 359
LpnPI CCDG 7 cut(s) 8, 30, 90, 147, 263, 276, 530
Lsp1109I GCAGC 2 cut(s) 124, 379
MaeI CTAG 1 cut(s) 479
MaeII ACGT 2 cut(s) 166, 489
MaeIII GTNAC 2 cut(s) 490, 643
MalI GATC 3 cut(s) 69, 254, 682
MboI GATC 3 cut(s) 67, 252, 680
MboII GAAGA 4 cut(s) 77, 98, 136, 152
MflI RGATCY 1 cut(s) 67
MlsI TGGCCA 1 cut(s) 410
MluCI AATT 2 cut(s) 113, 257
MluNI TGGCCA 1 cut(s) 410
MlyI GAGTC 1 cut(s) 97
MmeI TCCRAC 2 cut(s) 250, 681
MnlI CCTC 4 cut(s) 51, 138, 141, 291
Mox20I TGGCCA 1 cut(s) 410
Mph1103I ATGCAT 1 cut(s) 511
MscI TGGCCA 1 cut(s) 410
MseI TTAA 1 cut(s) 540
MslI CAYNNNNRTG 1 cut(s) 221
Msp20I TGGCCA 1 cut(s) 410
MspI CCGG 1 cut(s) 263
MspR9I CCNGG 1 cut(s) 263
MvnI CGCG 3 cut(s) 589, 591, 619
MwoI GCNNNNNNNGC 4 cut(s) 41, 192, 466, 586
NciI CCSGG 1 cut(s) 263
NdeII GATC 3 cut(s) 67, 252, 680
NlaIII CATG 3 cut(s) 226, 316, 513
NlaIV GGNNCC 3 cut(s) 228, 361, 476
NmeAIII GCCGAG 1 cut(s) 501
NmuCI GTSAC 1 cut(s) 490
NsiI ATGCAT 1 cut(s) 511
NspI RCATGY 1 cut(s) 513
PaeI GCATGC 1 cut(s) 513
PauI GCGCGC 1 cut(s) 589
PfeI GAWTC 3 cut(s) 19, 197, 573
Pfl23II CGTACG 1 cut(s) 486
PflMI CCANNNNNTGG 1 cut(s) 471
PkrI GCNGC 3 cut(s) 139, 394, 623
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
Ppu21I YACGTR 1 cut(s) 490
PpuMI RGGWCCY 1 cut(s) 475
PshBI ATTAAT 1 cut(s) 540
Psp1406I AACGTT 1 cut(s) 166
Psp5II RGGWCCY 1 cut(s) 475
PspLI CGTACG 1 cut(s) 486
PspN4I GGNNCC 3 cut(s) 228, 361, 476
PspPI GGNCC 1 cut(s) 475
PspPPI RGGWCCY 1 cut(s) 475
PsuI RGATCY 1 cut(s) 67
PteI GCGCGC 1 cut(s) 589
RsaI GTAC 3 cut(s) 29, 421, 488
RsaNI GTAC 3 cut(s) 28, 420, 487
RseI CAYNNNNRTG 1 cut(s) 221
SaqAI TTAA 1 cut(s) 540
SatI GCNGC 3 cut(s) 138, 393, 622
Sau3AI GATC 3 cut(s) 67, 252, 680
Sau96I GGNCC 1 cut(s) 475
SchI GAGTC 1 cut(s) 97
ScrFI CCNGG 1 cut(s) 263
SetI ASST 9 cut(s) 130, 169, 206, 245, 283, 332, 480, 492, 497
SfcI CTRYAG 1 cut(s) 599
SinI GGWCC 1 cut(s) 475
SmiMI CAYNNNNRTG 1 cut(s) 221
SphI GCATGC 1 cut(s) 513
Sse9I AATT 2 cut(s) 113, 257
SsiI CCGC 1 cut(s) 622
SspI AATATT 2 cut(s) 89, 538
SspMI CTAG 1 cut(s) 479
StyD4I CCNGG 1 cut(s) 261
StyI CCWWGG 2 cut(s) 36, 470
TaaI ACNGT 5 cut(s) 518, 630, 643, 677, 703
TaiI ACGT 2 cut(s) 169, 492
TaqI TCGA 2 cut(s) 63, 173
TasI AATT 2 cut(s) 113, 257
TauI GCSGC 1 cut(s) 624
TfiI GAWTC 3 cut(s) 19, 197, 573
Tru1I TTAA 1 cut(s) 540
Tru9I TTAA 1 cut(s) 540
TscAI CASTG 3 cut(s) 521, 633, 694
TseFI GTSAC 1 cut(s) 490
TseI GCWGC 2 cut(s) 137, 392
Tsp45I GTSAC 1 cut(s) 490
TspDTI ATGAA 3 cut(s) 211, 235, 301
TspRI CASTG 3 cut(s) 521, 633, 694
Van91I CCANNNNNTGG 1 cut(s) 471
VpaK11BI GGWCC 1 cut(s) 475
VspI ATTAAT 1 cut(s) 540
XapI RAATTY 2 cut(s) 113, 257
XceI RCATGY 1 cut(s) 513
XmiI GTMKAC 1 cut(s) 598
XspI CTAG 1 cut(s) 479
Zsp2I ATGCAT 1 cut(s) 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.