Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000574

Physical Location & Seq

Genomic Coordinates Forward (+)

61945662 .. 61946300

Gene Structure 639 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00211490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGCTGATTTCCGCCATCAATGGCCATCCTTGGTCTTACCGCCTGAACATGTCAGTGAACGTGATAATATCTTCGTCATATTCAACATTGTTCTAGTAGACTTTGCAAGACAAACAGCCCCCTCCACCTTCGCCATTTTCACTTTCATCGTTCCAATACTCCTCACCTTTATCCAGATCAGATTCCCTTCTGCCGGAATACGGTCTTCTCCATTTGAAACCCACTATACCACGTTCATGGTAGCCATGCTCAGCTTACTTGGCTTCTGTTGCTTTGCCATTGGAGCTACTCTAAACTTATTCCCAACTCACGCAAGAAAACTTCATATGGCTAAGAAGTTAACAGCTTTGCTCTCAGTGGCTTCACTTGTTTCTCTTCTGCTTCCCAAGCCGTGGGACCACGTGCCGTACGTGACCTACTTCTTGTATTTTACACGCCGGTGTCTTGGGTTGGTCAGAAATATATTTCTGGCTTATTACCACCACGTTGCAAGTGGATTTGTGCGTATCTTACGCGCGCATCAACAGCAGTTGAGACGAATGCGCCCACTGTTGCCCCTGACAGTCAGTCAGCCCAATGTGTCCAACCAGCCAATTGTAAATTATGGATCGATCACGGAAGTCAGAACCCTCCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

212

Amino Acids

24.31

Weight (kDa)

10.23

Isoelectric Point (pI)

52.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000574)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13031 FvH4_3g38201 FvH4_7g11471 FvH4_7g15661
malus_domestica	MD02G1210800.v1.1 MD07G1115400.v1.1
prunus_persica	Prupe.2G076600_v2.0.a1 Prupe.2G137400_v2.0.a1 Prupe.2G142700_v2.0.a1 Prupe.2G143000_v2.0.a1 Prupe.2G143100_v2.0.a1 Prupe.2G179900_v2.0.a1 Prupe.2G180000_v2.0.a1 Prupe.2G180100_v2.0.a1 Prupe.2G180200_v2.0.a1 Prupe.2G180300_v2.0.a1
pyrus_communis	pycom07g10060
rosa_laevigata	RLG00000000617 RLG00000002126 RLG00000002129 RLG00000002130 RLG00000014963 RLG00000014966 RLG00000017055 RLG00000017058 RLG00000017061 RLG00000028520 RLG00000028521 RLG00000029984 RLG00000035987 RLG00000035999 RLG00000036002
rosa_roxburghii	Rroxscaffold_1G00012110 Rroxscaffold_1G00012170 Rroxscaffold_3G00219560 Rroxscaffold_4G00298060 Rroxscaffold_4G00298110 Rroxscaffold_4G00298120 Rroxscaffold_4G00305310 Rroxscaffold_7G00211490
rosa_rugosa	Rorug01G0206500 Rorug01G0261300 Rorug01G0261400 Rorug05G0392600 Rorug07G0339600 Rorug07G0339700
rosa_samantha	Rh1AG223300 Rh1AG223400 Rh1AG275200 Rh1AG275300 Rh1BG189500 Rh1BG189600 Rh1BG190900 Rh1BG242100 Rh1CG258200 Rh1CG258500 Rh1CG258600 Rh1DG218300 Rh1DG218400 Rh1DG270900 Rh1DG271000 Rh2AG144400 Rh2AG144600 Rh2AG145000 Rh2BG149400 Rh2BG149700 Rh2BG150000 Rh2BG150100 Rh2BG150300 Rh2CG150700 Rh2CG150900 Rh2DG149900 Rh2DG150100 Rh2DG150400 Rh5DG481400 Rh6AG063300 Rh6BG056400 Rh6BG056600 Rh6BG057000 Rh6CG056500 Rh7AG494100 Rh7AG494200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	393
AccI	GTMKAC	1 cut(s)	99
AccII	CGCG	2 cut(s)	516, 518
AciI	CCGC	2 cut(s)	13, 41
AclWI	GGATC	1 cut(s)	616
AcoI	YGGCCR	1 cut(s)	23
AcvI	CACGTG	1 cut(s)	403
AfaI	GTAC	1 cut(s)	410
AfiI	CCNNNNNNNGG	3 cut(s)	194, 201, 393
AflIII	ACRYGT	1 cut(s)	49
AgsI	TTSAA	2 cut(s)	85, 218
AhdI	GACNNNNNGTC	1 cut(s)	567
AleI	CACNNNNGTG	1 cut(s)	439
AluBI	AGCT	3 cut(s)	255, 287, 347
AluI	AGCT	3 cut(s)	255, 287, 347
Alw26I	GTCTC	1 cut(s)	529
AlwI	GGATC	1 cut(s)	616
AoxI	GGCC	1 cut(s)	23
AspLEI	GCGC	3 cut(s)	518, 520, 546
AspS9I	GGNCC	1 cut(s)	397
AsuHPI	GGTGA	1 cut(s)	157
AvaII	GGWCC	1 cut(s)	397
BalI	TGGCCA	1 cut(s)	25
BbrPI	CACGTG	1 cut(s)	403
BbsI	GAAGAC	1 cut(s)	198
BccI	CCATC	2 cut(s)	24, 34
BceAI	ACGGC	2 cut(s)	376, 391
BcoDI	GTCTC	1 cut(s)	529
BfaI	CTAG	1 cut(s)	95
BlpI	GCTNAGC	1 cut(s)	251
Bme18I	GGWCC	1 cut(s)	397
BmeRI	GACNNNNNGTC	1 cut(s)	567
BmgT120I	GGNCC	1 cut(s)	397
BmiI	GGNNCC	1 cut(s)	398
BmsI	GCATC	1 cut(s)	529
BpiI	GAAGAC	1 cut(s)	198
Bpu1102I	GCTNAGC	1 cut(s)	251
Bsa29I	ATCGAT	1 cut(s)	611
BsaAI	YACGTR	2 cut(s)	403, 412
BsaJI	CCNNGG	2 cut(s)	30, 392
Bsc4I	CCNNNNNNNGG	3 cut(s)	194, 201, 393
Bse118I	RCCGGY	1 cut(s)	438
BseCI	ATCGAT	1 cut(s)	611
BseDI	CCNNGG	2 cut(s)	30, 392
BseGI	GGATG	1 cut(s)	26
BseLI	CCNNNNNNNGG	3 cut(s)	194, 201, 393
BseMII	CTCAG	2 cut(s)	265, 369
BsePI	GCGCGC	1 cut(s)	516
BseRI	GAGGAG	1 cut(s)	152
Bsh1236I	CGCG	2 cut(s)	516, 518
BshFI	GGCC	1 cut(s)	25
BshVI	ATCGAT	1 cut(s)	611
BsiSI	CCGG	2 cut(s)	195, 439
BsiWI	CGTACG	1 cut(s)	408
BslFI	GGGAC	1 cut(s)	410
BslI	CCNNNNNNNGG	3 cut(s)	194, 201, 393
BsmAI	GTCTC	1 cut(s)	529
BsmBI	CGTCTC	1 cut(s)	529
BsmFI	GGGAC	1 cut(s)	410
BsmI	GAATGC	1 cut(s)	546
BsnI	GGCC	1 cut(s)	25
Bsp143I	GATC	3 cut(s)	177, 608, 612
Bsp1720I	GCTNAGC	1 cut(s)	251
BspACI	CCGC	2 cut(s)	13, 41
BspANI	GGCC	1 cut(s)	25
BspCNI	CTCAG	2 cut(s)	264, 368
BspDI	ATCGAT	1 cut(s)	611
BspFNI	CGCG	2 cut(s)	516, 518
BspLI	GGNNCC	1 cut(s)	398
BspPI	GGATC	1 cut(s)	616
BsrFI	RCCGGY	1 cut(s)	438
BssAI	RCCGGY	1 cut(s)	438
BssECI	CCNNGG	2 cut(s)	30, 392
BssHII	GCGCGC	1 cut(s)	516
BssMI	GATC	3 cut(s)	177, 608, 612
BssT1I	CCWWGG	1 cut(s)	30
Bst4CI	ACNGT	3 cut(s)	204, 552, 565
Bst6I	CTCTTC	1 cut(s)	381
BstBAI	YACGTR	2 cut(s)	403, 412
BstC8I	GCNNGC	1 cut(s)	518
BstDEI	CTNAG	3 cut(s)	251, 333, 355
BstDSI	CCRYGG	1 cut(s)	392
BstF5I	GGATG	1 cut(s)	26
BstFNI	CGCG	2 cut(s)	516, 518
BstHHI	GCGC	3 cut(s)	518, 520, 546
BstKTI	GATC	3 cut(s)	180, 611, 615
BstMAI	GTCTC	1 cut(s)	529
BstMBI	GATC	3 cut(s)	177, 608, 612
BstMWI	GCNNNNNNNGC	5 cut(s)	261, 270, 284, 388, 526
BstNSI	RCATGY	1 cut(s)	53
BstUI	CGCG	2 cut(s)	516, 518
BstV2I	GAAGAC	1 cut(s)	198
BstXI	CCANNNNNNTGG	1 cut(s)	238
Bsu15I	ATCGAT	1 cut(s)	611
BsuRI	GGCC	1 cut(s)	25
BsuTUI	ATCGAT	1 cut(s)	611
BtgI	CCRYGG	1 cut(s)	392
BtsCI	GGATG	1 cut(s)	26
BtsIMutI	CAGTG	3 cut(s)	61, 363, 548
Cac8I	GCNNGC	1 cut(s)	518
CfoI	GCGC	3 cut(s)	518, 520, 546
Cfr10I	RCCGGY	1 cut(s)	438
Cfr13I	GGNCC	1 cut(s)	397
ClaI	ATCGAT	1 cut(s)	611
Csp6I	GTAC	1 cut(s)	409
CviAII	CATG	3 cut(s)	50, 238, 247
CviQI	GTAC	1 cut(s)	409
DdeI	CTNAG	3 cut(s)	251, 333, 355
DpnI	GATC	3 cut(s)	179, 610, 614
DpnII	GATC	3 cut(s)	177, 608, 612
DriI	GACNNNNNGTC	1 cut(s)	567
EaeI	YGGCCR	1 cut(s)	23
Eam1104I	CTCTTC	1 cut(s)	381
Eam1105I	GACNNNNNGTC	1 cut(s)	567
EarI	CTCTTC	1 cut(s)	381
Eco130I	CCWWGG	1 cut(s)	30
Eco47I	GGWCC	1 cut(s)	397
Eco72I	CACGTG	1 cut(s)	403
EcoT14I	CCWWGG	1 cut(s)	30
ErhI	CCWWGG	1 cut(s)	30
Esp3I	CGTCTC	1 cut(s)	529
FaeI	CATG	3 cut(s)	53, 241, 250
FaiI	YATR	9 cut(s)	51, 80, 228, 239, 248, 327, 329, 464, 606
FaqI	GGGAC	1 cut(s)	410
FatI	CATG	3 cut(s)	49, 237, 246
FauNDI	CATATG	1 cut(s)	327
FblI	GTMKAC	1 cut(s)	99
FokI	GGATG	1 cut(s)	13
FspBI	CTAG	1 cut(s)	95
GlaI	GCGC	3 cut(s)	517, 519, 545
HaeIII	GGCC	1 cut(s)	25
HapII	CCGG	2 cut(s)	195, 439
HhaI	GCGC	3 cut(s)	518, 520, 546
Hin1II	CATG	3 cut(s)	53, 241, 250
Hin6I	GCGC	3 cut(s)	516, 518, 544
HinP1I	GCGC	3 cut(s)	516, 518, 544
HincII	GTYRAC	1 cut(s)	342
HindII	GTYRAC	1 cut(s)	342
HinfI	GANTC	1 cut(s)	183
HpaI	GTTAAC	1 cut(s)	342
HpaII	CCGG	2 cut(s)	195, 439
HphI	GGTGA	1 cut(s)	157
Hpy166II	GTNNAC	3 cut(s)	59, 100, 342
Hpy188I	TCNGA	3 cut(s)	182, 458, 626
Hpy188III	TCNNGA	1 cut(s)	175
Hpy8I	GTNNAC	3 cut(s)	59, 100, 342
HpyAV	CCTTC	2 cut(s)	139, 198
HpyCH4III	ACNGT	3 cut(s)	204, 552, 565
HpyCH4IV	ACGT	5 cut(s)	61, 233, 402, 411, 486
HpyCH4V	TGCA	2 cut(s)	107, 491
HpyF10VI	GCNNNNNNNGC	5 cut(s)	261, 270, 284, 388, 526
HpyF3I	CTNAG	3 cut(s)	251, 333, 355
HpySE526I	ACGT	5 cut(s)	61, 233, 402, 411, 486
Hsp92II	CATG	3 cut(s)	53, 241, 250
HspAI	GCGC	3 cut(s)	516, 518, 544
KspAI	GTTAAC	1 cut(s)	342
Kzo9I	GATC	3 cut(s)	177, 608, 612
LmnI	GCTCC	1 cut(s)	284
LpnPI	CCDG	7 cut(s)	57, 188, 208, 452, 455, 572, 602
LweI	GCATC	1 cut(s)	529
MaeI	CTAG	1 cut(s)	95
MaeII	ACGT	5 cut(s)	61, 233, 402, 411, 486
MaeIII	GTNAC	1 cut(s)	412
MalI	GATC	3 cut(s)	179, 610, 614
MboI	GATC	3 cut(s)	177, 608, 612
MboII	GAAGA	3 cut(s)	64, 198, 368
MfeI	CAATTG	1 cut(s)	594
MlsI	TGGCCA	1 cut(s)	25
MluCI	AATT	2 cut(s)	594, 601
MluNI	TGGCCA	1 cut(s)	25
MmeI	TCCRAC	1 cut(s)	609
MnlI	CCTC	2 cut(s)	133, 173
Mox20I	TGGCCA	1 cut(s)	25
MscI	TGGCCA	1 cut(s)	25
MseI	TTAA	1 cut(s)	341
MslI	CAYNNNNRTG	3 cut(s)	54, 236, 439
Msp20I	TGGCCA	1 cut(s)	25
MspI	CCGG	2 cut(s)	195, 439
MunI	CAATTG	1 cut(s)	594
Mva1269I	GAATGC	1 cut(s)	546
MvnI	CGCG	2 cut(s)	516, 518
MwoI	GCNNNNNNNGC	5 cut(s)	261, 270, 284, 388, 526
NdeI	CATATG	1 cut(s)	327
NdeII	GATC	3 cut(s)	177, 608, 612
NlaIII	CATG	3 cut(s)	53, 241, 250
NlaIV	GGNNCC	1 cut(s)	398
NmuCI	GTSAC	1 cut(s)	412
NspI	RCATGY	1 cut(s)	53
OliI	CACNNNNGTG	1 cut(s)	439
PauI	GCGCGC	1 cut(s)	516
PciI	ACATGT	1 cut(s)	49
PcsI	WCGNNNNNNNCGW	1 cut(s)	408
PctI	GAATGC	1 cut(s)	546
PfeI	GAWTC	1 cut(s)	183
Pfl23II	CGTACG	1 cut(s)	408
PflMI	CCANNNNNTGG	1 cut(s)	393
PmaCI	CACGTG	1 cut(s)	403
PmlI	CACGTG	1 cut(s)	403
Ppu21I	YACGTR	2 cut(s)	403, 412
PscI	ACATGT	1 cut(s)	49
PspCI	CACGTG	1 cut(s)	403
PspLI	CGTACG	1 cut(s)	408
PspN4I	GGNNCC	1 cut(s)	398
PspPI	GGNCC	1 cut(s)	397
PteI	GCGCGC	1 cut(s)	516
RsaI	GTAC	1 cut(s)	410
RsaNI	GTAC	1 cut(s)	409
RseI	CAYNNNNRTG	3 cut(s)	54, 236, 439
SaqAI	TTAA	1 cut(s)	341
Sau3AI	GATC	3 cut(s)	177, 608, 612
Sau96I	GGNCC	1 cut(s)	397
SfaNI	GCATC	1 cut(s)	529
SgrAI	CRCCGGYG	1 cut(s)	438
SinI	GGWCC	1 cut(s)	397
SmiMI	CAYNNNNRTG	3 cut(s)	54, 236, 439
Sse9I	AATT	2 cut(s)	594, 601
SsiI	CCGC	2 cut(s)	13, 41
SspMI	CTAG	1 cut(s)	95
StyI	CCWWGG	1 cut(s)	30
TaaI	ACNGT	3 cut(s)	204, 552, 565
TaiI	ACGT	5 cut(s)	64, 236, 405, 414, 489
TaqI	TCGA	1 cut(s)	611
TasI	AATT	2 cut(s)	594, 601
TfiI	GAWTC	1 cut(s)	183
Tru1I	TTAA	1 cut(s)	341
Tru9I	TTAA	1 cut(s)	341
TscAI	CASTG	3 cut(s)	61, 363, 555
TseFI	GTSAC	1 cut(s)	412
Tsp45I	GTSAC	1 cut(s)	412
TspDTI	ATGAA	3 cut(s)	136, 226, 314
TspGWI	ACGGA	1 cut(s)	632
TspRI	CASTG	3 cut(s)	61, 363, 555
Van91I	CCANNNNNTGG	1 cut(s)	393
VpaK11BI	GGWCC	1 cut(s)	397
XceI	RCATGY	1 cut(s)	53
XcmI	CCANNNNNNNNNTGG	1 cut(s)	491
XmiI	GTMKAC	1 cut(s)	99
XspI	CTAG	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.