Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000574

Physical Location & Seq

Genomic Coordinates Reverse (-)

13517718 .. 13518152

Gene Structure 435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g15661.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGCCACTGATAATGATCATCATCTTCGCTCTCAGTGGCAATCAGCAGTCTCGAATAATCAACATGGTCACGTTTTTGTCTACCTCAACGTTGTAGTTCCAACTGCATCTTCTTCTTTTGCTACTACTGTCTCATCTACTAGTACTGCTTCACACTCTAACAGTCTTGCCTTCATCGTCCCGGTGCTCTTAATCTTCGTTCAGATCAAGTTCCCAGGGATCAACAACATGTCTTCGCCGTTTGAAACGCACCATGCAACCACCATGGCCGCCATTGCAAGCATGCTTGTGTATTGGCTAGGGCTAGAGGCCAGGCAGAGATTCCCAGCTTACACTGTCAACTTTCGAATGGTGAGGACAGTTTCAGGTTTGATCTCGATTGCTTCACTGCTCTCGCTTCTGCTTCCCTACTCTTGGGAGCATGTACCATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

145

Amino Acids

15.95

Weight (kDa)

8.23

Isoelectric Point (pI)

39.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000574)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13031 FvH4_3g38201 FvH4_7g11471 FvH4_7g15661
malus_domestica	MD02G1210800.v1.1 MD07G1115400.v1.1
prunus_persica	Prupe.2G076600_v2.0.a1 Prupe.2G137400_v2.0.a1 Prupe.2G142700_v2.0.a1 Prupe.2G143000_v2.0.a1 Prupe.2G143100_v2.0.a1 Prupe.2G179900_v2.0.a1 Prupe.2G180000_v2.0.a1 Prupe.2G180100_v2.0.a1 Prupe.2G180200_v2.0.a1 Prupe.2G180300_v2.0.a1
pyrus_communis	pycom07g10060
rosa_laevigata	RLG00000000617 RLG00000002126 RLG00000002129 RLG00000002130 RLG00000014963 RLG00000014966 RLG00000017055 RLG00000017058 RLG00000017061 RLG00000028520 RLG00000028521 RLG00000029984 RLG00000035987 RLG00000035999 RLG00000036002
rosa_roxburghii	Rroxscaffold_1G00012110 Rroxscaffold_1G00012170 Rroxscaffold_3G00219560 Rroxscaffold_4G00298060 Rroxscaffold_4G00298110 Rroxscaffold_4G00298120 Rroxscaffold_4G00305310 Rroxscaffold_7G00211490
rosa_rugosa	Rorug01G0206500 Rorug01G0261300 Rorug01G0261400 Rorug05G0392600 Rorug07G0339600 Rorug07G0339700
rosa_samantha	Rh1AG223300 Rh1AG223400 Rh1AG275200 Rh1AG275300 Rh1BG189500 Rh1BG189600 Rh1BG190900 Rh1BG242100 Rh1CG258200 Rh1CG258500 Rh1CG258600 Rh1DG218300 Rh1DG218400 Rh1DG270900 Rh1DG271000 Rh2AG144400 Rh2AG144600 Rh2AG145000 Rh2BG149400 Rh2BG149700 Rh2BG150000 Rh2BG150100 Rh2BG150300 Rh2CG150700 Rh2CG150900 Rh2DG149900 Rh2DG150100 Rh2DG150400 Rh5DG481400 Rh6AG063300 Rh6BG056400 Rh6BG056600 Rh6BG057000 Rh6CG056500 Rh7AG494100 Rh7AG494200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	81
AciI	CCGC	1 cut(s)	270
AclI	AACGTT	1 cut(s)	90
AclWI	GGATC	1 cut(s)	227
AcoI	YGGCCR	2 cut(s)	3, 267
AfaI	GTAC	2 cut(s)	145, 426
AfiI	CCNNNNNNNGG	1 cut(s)	414
AflIII	ACRYGT	1 cut(s)	228
AgsI	TTSAA	1 cut(s)	245
AhlI	ACTAGT	1 cut(s)	140
AjnI	CCWGG	2 cut(s)	214, 311
AjuI	GAANNNNNNNTTGG	2 cut(s)	94, 126
AluBI	AGCT	1 cut(s)	329
AluI	AGCT	1 cut(s)	329
Alw21I	GWGCWC	1 cut(s)	189
Alw26I	GTCTC	2 cut(s)	55, 136
AlwI	GGATC	1 cut(s)	227
AoxI	GGCC	3 cut(s)	3, 267, 309
AsuC2I	CCSGG	1 cut(s)	182
AsuHPI	GGTGA	1 cut(s)	364
AsuII	TTCGAA	1 cut(s)	346
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	225
Bbv12I	GWGCWC	1 cut(s)	189
BceAI	ACGGC	1 cut(s)	223
BciT130I	CCWGG	2 cut(s)	216, 313
BclI	TGATCA	1 cut(s)	16
BcnI	CCSGG	1 cut(s)	182
BcoDI	GTCTC	2 cut(s)	55, 136
BcuI	ACTAGT	1 cut(s)	140
BfaI	CTAG	3 cut(s)	141, 299, 305
BisI	GCNGC	1 cut(s)	270
BlsI	GCNGC	1 cut(s)	271
BmcAI	AGTACT	1 cut(s)	145
Bme1390I	CCNGG	3 cut(s)	182, 216, 313
BmrFI	CCNGG	3 cut(s)	182, 216, 313
BmsI	GCATC	1 cut(s)	116
BpiI	GAAGAC	1 cut(s)	225
Bpu14I	TTCGAA	1 cut(s)	346
BpuMI	CCSGG	1 cut(s)	182
BsaBI	GATNNNNATC	2 cut(s)	15, 21
BsaJI	CCNNGG	3 cut(s)	214, 215, 264
Bsc4I	CCNNNNNNNGG	1 cut(s)	414
Bse3DI	GCAATG	1 cut(s)	273
Bse8I	GATNNNNATC	2 cut(s)	15, 21
BseBI	CCWGG	2 cut(s)	216, 313
BseDI	CCNNGG	3 cut(s)	214, 215, 264
BseJI	GATNNNNATC	2 cut(s)	15, 21
BseLI	CCNNNNNNNGG	1 cut(s)	414
BseMI	GCAATG	1 cut(s)	273
BseMII	CTCAG	1 cut(s)	47
BseYI	CCCAGC	1 cut(s)	325
BshFI	GGCC	3 cut(s)	5, 269, 311
BsiHKAI	GWGCWC	1 cut(s)	189
BsiSI	CCGG	1 cut(s)	182
BslFI	GGGAC	1 cut(s)	164
BslI	CCNNNNNNNGG	1 cut(s)	414
BsmAI	GTCTC	2 cut(s)	55, 136
BsmFI	GGGAC	1 cut(s)	164
BsnI	GGCC	3 cut(s)	5, 269, 311
Bsp119I	TTCGAA	1 cut(s)	346
Bsp1286I	GDGCHC	1 cut(s)	189
Bsp143I	GATC	4 cut(s)	16, 204, 219, 372
Bsp19I	CCATGG	1 cut(s)	264
BspACI	CCGC	1 cut(s)	270
BspANI	GGCC	3 cut(s)	5, 269, 311
BspCNI	CTCAG	1 cut(s)	46
BspPI	GGATC	1 cut(s)	227
BspT104I	TTCGAA	1 cut(s)	346
BsrDI	GCAATG	1 cut(s)	273
BssECI	CCNNGG	3 cut(s)	214, 215, 264
BssMI	GATC	4 cut(s)	16, 204, 219, 372
BssT1I	CCWWGG	1 cut(s)	264
Bst2UI	CCWGG	2 cut(s)	216, 313
Bst4CI	ACNGT	4 cut(s)	130, 164, 337, 361
BstBI	TTCGAA	1 cut(s)	346
BstC8I	GCNNGC	2 cut(s)	280, 284
BstDEI	CTNAG	1 cut(s)	33
BstDSI	CCRYGG	1 cut(s)	264
BstKTI	GATC	4 cut(s)	19, 207, 222, 375
BstMAI	GTCTC	2 cut(s)	55, 136
BstMBI	GATC	4 cut(s)	16, 204, 219, 372
BstMWI	GCNNNNNNNGC	1 cut(s)	275
BstNI	CCWGG	2 cut(s)	216, 313
BstNSI	RCATGY	3 cut(s)	232, 286, 425
BstSCI	CCNGG	3 cut(s)	180, 214, 311
BstV2I	GAAGAC	1 cut(s)	225
BsuRI	GGCC	3 cut(s)	5, 269, 311
BtgI	CCRYGG	1 cut(s)	264
BtsI	GCAGTG	1 cut(s)	386
BtsIMutI	CAGTG	4 cut(s)	6, 41, 333, 386
Cac8I	GCNNGC	2 cut(s)	280, 284
Csp6I	GTAC	2 cut(s)	144, 425
CviAII	CATG	6 cut(s)	65, 229, 254, 265, 283, 422
CviJI	RGCY	6 cut(s)	5, 269, 298, 304, 311, 329
CviKI_1	RGCY	6 cut(s)	5, 269, 298, 304, 311, 329
CviQI	GTAC	2 cut(s)	144, 425
DdeI	CTNAG	1 cut(s)	33
DpnI	GATC	4 cut(s)	18, 206, 221, 374
DpnII	GATC	4 cut(s)	16, 204, 219, 372
EaeI	YGGCCR	2 cut(s)	3, 267
Eco130I	CCWWGG	1 cut(s)	264
EcoRII	CCWGG	2 cut(s)	214, 311
EcoT14I	CCWWGG	1 cut(s)	264
ErhI	CCWWGG	1 cut(s)	264
FaeI	CATG	6 cut(s)	68, 232, 257, 268, 286, 425
FaiI	YATR	7 cut(s)	66, 230, 255, 266, 284, 423, 430
FaqI	GGGAC	1 cut(s)	164
FatI	CATG	6 cut(s)	64, 228, 253, 264, 282, 421
FbaI	TGATCA	1 cut(s)	16
FblI	GTMKAC	1 cut(s)	81
Fnu4HI	GCNGC	1 cut(s)	270
Fsp4HI	GCNGC	1 cut(s)	270
FspBI	CTAG	3 cut(s)	141, 299, 305
GluI	GCNGC	1 cut(s)	270
GsaI	CCCAGC	1 cut(s)	329
HaeIII	GGCC	3 cut(s)	5, 269, 311
HapII	CCGG	1 cut(s)	182
Hin1II	CATG	6 cut(s)	68, 232, 257, 268, 286, 425
HincII	GTYRAC	1 cut(s)	340
HindII	GTYRAC	1 cut(s)	340
HinfI	GANTC	1 cut(s)	321
HpaII	CCGG	1 cut(s)	182
HphI	GGTGA	1 cut(s)	364
Hpy166II	GTNNAC	2 cut(s)	82, 340
Hpy188I	TCNGA	1 cut(s)	204
Hpy188III	TCNNGA	2 cut(s)	52, 376
Hpy8I	GTNNAC	2 cut(s)	82, 340
HpyAV	CCTTC	1 cut(s)	181
HpyCH4III	ACNGT	4 cut(s)	130, 164, 337, 361
HpyCH4IV	ACGT	2 cut(s)	72, 90
HpyCH4V	TGCA	3 cut(s)	107, 257, 278
HpyF10VI	GCNNNNNNNGC	1 cut(s)	275
HpyF3I	CTNAG	1 cut(s)	33
HpySE526I	ACGT	2 cut(s)	72, 90
Hsp92II	CATG	6 cut(s)	68, 232, 257, 268, 286, 425
Ksp22I	TGATCA	1 cut(s)	16
Kzo9I	GATC	4 cut(s)	16, 204, 219, 372
LmnI	GCTCC	1 cut(s)	418
LpnPI	CCDG	7 cut(s)	195, 201, 228, 298, 325, 339, 351
LweI	GCATC	1 cut(s)	116
MaeI	CTAG	3 cut(s)	141, 299, 305
MaeII	ACGT	2 cut(s)	72, 90
MaeIII	GTNAC	1 cut(s)	68
MalI	GATC	4 cut(s)	18, 206, 221, 374
MboI	GATC	4 cut(s)	16, 204, 219, 372
MboII	GAAGA	5 cut(s)	17, 102, 105, 187, 225
MhlI	GDGCHC	1 cut(s)	189
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	125
MnlI	CCTC	3 cut(s)	95, 301, 348
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	191, 433
MslI	CAYNNNNRTG	1 cut(s)	287
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	182
MspR9I	CCNGG	3 cut(s)	182, 216, 313
MvaI	CCWGG	2 cut(s)	216, 313
MwoI	GCNNNNNNNGC	1 cut(s)	275
NciI	CCSGG	1 cut(s)	182
NcoI	CCATGG	1 cut(s)	264
NdeII	GATC	4 cut(s)	16, 204, 219, 372
NlaIII	CATG	6 cut(s)	68, 232, 257, 268, 286, 425
NmuCI	GTSAC	1 cut(s)	68
NspI	RCATGY	3 cut(s)	232, 286, 425
NspV	TTCGAA	1 cut(s)	346
PaeI	GCATGC	1 cut(s)	286
PasI	CCCWGGG	1 cut(s)	215
PciI	ACATGT	1 cut(s)	228
PfeI	GAWTC	1 cut(s)	321
PkrI	GCNGC	1 cut(s)	271
PscI	ACATGT	1 cut(s)	228
Psp1406I	AACGTT	1 cut(s)	90
Psp6I	CCWGG	2 cut(s)	214, 311
PspFI	CCCAGC	1 cut(s)	325
PspGI	CCWGG	2 cut(s)	214, 311
RsaI	GTAC	2 cut(s)	145, 426
RsaNI	GTAC	2 cut(s)	144, 425
RseI	CAYNNNNRTG	1 cut(s)	287
SaqAI	TTAA	2 cut(s)	191, 433
SatI	GCNGC	1 cut(s)	270
Sau3AI	GATC	4 cut(s)	16, 204, 219, 372
ScaI	AGTACT	1 cut(s)	145
ScrFI	CCNGG	3 cut(s)	182, 216, 313
SduI	GDGCHC	1 cut(s)	189
SetI	ASST	5 cut(s)	75, 87, 93, 331, 370
SfaNI	GCATC	1 cut(s)	116
SfuI	TTCGAA	1 cut(s)	346
SmiMI	CAYNNNNRTG	1 cut(s)	287
SpeI	ACTAGT	1 cut(s)	140
SphI	GCATGC	1 cut(s)	286
SsiI	CCGC	1 cut(s)	270
SspMI	CTAG	3 cut(s)	141, 299, 305
StyD4I	CCNGG	3 cut(s)	180, 214, 311
StyI	CCWWGG	1 cut(s)	264
TaaI	ACNGT	4 cut(s)	130, 164, 337, 361
TaiI	ACGT	2 cut(s)	75, 93
TaqI	TCGA	3 cut(s)	53, 346, 377
TatI	WGTACW	1 cut(s)	143
TauI	GCSGC	1 cut(s)	272
TfiI	GAWTC	1 cut(s)	321
Tru1I	TTAA	2 cut(s)	191, 433
Tru9I	TTAA	2 cut(s)	191, 433
TscAI	CASTG	4 cut(s)	13, 41, 340, 393
TseFI	GTSAC	1 cut(s)	68
Tsp45I	GTSAC	1 cut(s)	68
TspDTI	ATGAA	1 cut(s)	163
TspRI	CASTG	4 cut(s)	13, 41, 340, 393
XceI	RCATGY	3 cut(s)	232, 286, 425
XmiI	GTMKAC	1 cut(s)	81
XspI	CTAG	3 cut(s)	141, 299, 305
ZrmI	AGTACT	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.