Rorug01G0261300

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
37062095 .. 37062454
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0261300.1

Sequence Viewer

Length: 360 bp
ATGTCTAACCAAGATGTGAGAATAAAAGGTTACGAGATCAAGGCTAATACACAAGTTATGGTTAATGCATGGGCGCTTGGAAGAGATCCTAAGTCATACACAAATACTGGGCGGTACGAGCCAGAAAGATTTTTGGACAATGCCATAGACTATAAAGGGAATAACTTCGAACTAATTCCATTTGGGGCTGGGAGATGGGGTTGCCCTGGAATTCAGTTTGCTATGGTTGTTAAAGAGCTTGCTTTGGCAAACATTTTGCATAAGTTCGATTGGGCTTTGCCTCATGGTACAACAGGGGAAGACTTAGACATGACTGAAACCACTGGAGCAACCGCACACAGAAAGTATCCTTTAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.39

Weight (kDa)

6.27

Isoelectric Point (pI)

17.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 3 - 106 7.1e-29 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 112, 333
AclWI GGATC 1 cut(s) 80
AcsI RAATTY 1 cut(s) 210
AfaI GTAC 2 cut(s) 116, 289
AjnI CCWGG 1 cut(s) 205
AluBI AGCT 1 cut(s) 238
AluI AGCT 1 cut(s) 238
AlwI GGATC 1 cut(s) 80
ApoI RAATTY 1 cut(s) 210
Asp700I GAANNNNTTC 2 cut(s) 164, 174
AspLEI GCGC 1 cut(s) 76
AsuII TTCGAA 1 cut(s) 168
BbsI GAAGAC 1 cut(s) 306
BccI CCATC 1 cut(s) 189
BciT130I CCWGG 1 cut(s) 207
BciVI GTATCC 1 cut(s) 357
BfoI RGCGCY 1 cut(s) 77
BfuI GTATCC 1 cut(s) 357
Bme1390I CCNGG 1 cut(s) 207
BmrFI CCNGG 1 cut(s) 207
BmrI ACTGGG 1 cut(s) 117
BmuI ACTGGG 1 cut(s) 117
BpiI GAAGAC 1 cut(s) 306
BpmI CTGGAG 1 cut(s) 345
Bpu14I TTCGAA 1 cut(s) 168
BsaJI CCNNGG 1 cut(s) 205
BsaXI ACNNNNNCTCC 2 cut(s) 184, 214
Bse1I ACTGG 2 cut(s) 112, 328
BseBI CCWGG 1 cut(s) 207
BseDI CCNNGG 1 cut(s) 205
BseNI ACTGG 2 cut(s) 112, 328
BseYI CCCAGC 1 cut(s) 188
Bsp119I TTCGAA 1 cut(s) 168
Bsp143I GATC 2 cut(s) 36, 85
BspACI CCGC 2 cut(s) 112, 333
BspPI GGATC 1 cut(s) 80
BspT104I TTCGAA 1 cut(s) 168
BsrI ACTGG 2 cut(s) 112, 328
BssECI CCNNGG 1 cut(s) 205
BssMI GATC 2 cut(s) 36, 85
Bst2UI CCWGG 1 cut(s) 207
Bst6I CTCTTC 1 cut(s) 76
BstBI TTCGAA 1 cut(s) 168
BstC8I GCNNGC 1 cut(s) 240
BstDEI CTNAG 2 cut(s) 90, 304
BstH2I RGCGCY 1 cut(s) 77
BstHHI GCGC 1 cut(s) 76
BstKTI GATC 2 cut(s) 39, 88
BstMBI GATC 2 cut(s) 36, 85
BstMWI GCNNNNNNNGC 1 cut(s) 118
BstNI CCWGG 1 cut(s) 207
BstSCI CCNGG 1 cut(s) 205
BstV2I GAAGAC 1 cut(s) 306
BstX2I RGATCY 1 cut(s) 85
BstYI RGATCY 1 cut(s) 85
BsuI GTATCC 1 cut(s) 357
BtsIMutI CAGTG 1 cut(s) 321
Cac8I GCNNGC 1 cut(s) 240
CfoI GCGC 1 cut(s) 76
Csp6I GTAC 2 cut(s) 115, 288
CviAII CATG 3 cut(s) 69, 284, 310
CviJI RGCY 5 cut(s) 44, 121, 188, 238, 275
CviKI_1 RGCY 5 cut(s) 44, 121, 188, 238, 275
CviQI GTAC 2 cut(s) 115, 288
DdeI CTNAG 2 cut(s) 90, 304
DpnI GATC 2 cut(s) 38, 87
DpnII GATC 2 cut(s) 36, 85
DraI TTTAAA 1 cut(s) 354
Eam1104I CTCTTC 1 cut(s) 76
EarI CTCTTC 1 cut(s) 76
EcoRI GAATTC 1 cut(s) 210
EcoRII CCWGG 1 cut(s) 205
EcoT22I ATGCAT 1 cut(s) 70
FaeI CATG 3 cut(s) 72, 287, 313
FaiI YATR 9 cut(s) 59, 70, 97, 146, 153, 224, 261, 285, 311
FatI CATG 3 cut(s) 68, 283, 309
GlaI GCGC 1 cut(s) 75
GsaI CCCAGC 1 cut(s) 192
GsuI CTGGAG 1 cut(s) 345
HaeII RGCGCY 1 cut(s) 77
HhaI GCGC 1 cut(s) 76
Hin1II CATG 3 cut(s) 72, 287, 313
Hin6I GCGC 1 cut(s) 74
HinP1I GCGC 1 cut(s) 74
HpyCH4V TGCA 2 cut(s) 68, 259
HpyF10VI GCNNNNNNNGC 1 cut(s) 118
HpyF3I CTNAG 2 cut(s) 90, 304
Hsp92II CATG 3 cut(s) 72, 287, 313
HspAI GCGC 1 cut(s) 74
Kzo9I GATC 2 cut(s) 36, 85
LmnI GCTCC 1 cut(s) 326
LpnPI CCDG 7 cut(s) 93, 135, 174, 192, 219, 279, 309
MaeIII GTNAC 1 cut(s) 29
MalI GATC 2 cut(s) 38, 87
MboI GATC 2 cut(s) 36, 85
MboII GAAGA 2 cut(s) 93, 311
MflI RGATCY 1 cut(s) 85
MluCI AATT 3 cut(s) 174, 210, 355
MnlI CCTC 1 cut(s) 291
Mph1103I ATGCAT 1 cut(s) 70
MroXI GAANNNNTTC 2 cut(s) 164, 174
MseI TTAA 4 cut(s) 63, 231, 353, 358
MspR9I CCNGG 1 cut(s) 207
MvaI CCWGG 1 cut(s) 207
MwoI GCNNNNNNNGC 1 cut(s) 118
NdeII GATC 2 cut(s) 36, 85
NlaIII CATG 3 cut(s) 72, 287, 313
NsiI ATGCAT 1 cut(s) 70
NspV TTCGAA 1 cut(s) 168
PdmI GAANNNNTTC 2 cut(s) 164, 174
Psp6I CCWGG 1 cut(s) 205
PspFI CCCAGC 1 cut(s) 188
PspGI CCWGG 1 cut(s) 205
PsuI RGATCY 1 cut(s) 85
RsaI GTAC 2 cut(s) 116, 289
RsaNI GTAC 2 cut(s) 115, 288
SaqAI TTAA 4 cut(s) 63, 231, 353, 358
Sau3AI GATC 2 cut(s) 36, 85
ScrFI CCNGG 1 cut(s) 207
SetI ASST 2 cut(s) 31, 240
SfuI TTCGAA 1 cut(s) 168
Sse9I AATT 3 cut(s) 174, 210, 355
SsiI CCGC 2 cut(s) 112, 333
StyD4I CCNGG 1 cut(s) 205
TaqI TCGA 2 cut(s) 168, 267
TasI AATT 3 cut(s) 174, 210, 355
Tru1I TTAA 4 cut(s) 63, 231, 353, 358
Tru9I TTAA 4 cut(s) 63, 231, 353, 358
TscAI CASTG 1 cut(s) 328
TspRI CASTG 1 cut(s) 328
XapI RAATTY 1 cut(s) 210
XmnI GAANNNNTTC 2 cut(s) 164, 174
Zsp2I ATGCAT 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.