Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0000574

Physical Location & Seq

Genomic Coordinates Reverse (-)

11745953 .. 11746387

Gene Structure 435 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G076600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGCTGCAGTTAATCATTTTTATGTTTTGAATATTGGGATGAATATTAACCATAATTTCAATGTCATTTACTTGTTCAACAATCTCAACCTGCAGTTGAGGAACACACTCTATGATCACGACATTCTTGCATTTATCATTCCAACACTCCTCACGTTGGTGCAGATCAGATATCCAGCTGATCAAGATCTCTTCCAAACACACCCTATGTCCATGAGCGTTGTGCTGTCTAGCTTGCTTGCTTATTGCTTGGCCTTCAGCTTGTGGGTGCTAAGTATAAGACATTATGCTCGTGGACAAAATCTTGCATATGCTCATTTCTGGTGCCCTATGGCCATGAGGCTGTTTGGTTCAGCCTCGGTTACTTCACTCTTCTCTACATTTTATTTCCCCATGACCCCTCCTGGCAGCCTCTCATTTACATTTTGTGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

145

Amino Acids

16.47

Weight (kDa)

7.8

Isoelectric Point (pI)

49.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000574)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13031 FvH4_3g38201 FvH4_7g11471 FvH4_7g15661
malus_domestica	MD02G1210800.v1.1 MD07G1115400.v1.1
prunus_persica	Prupe.2G076600_v2.0.a1 Prupe.2G137400_v2.0.a1 Prupe.2G142700_v2.0.a1 Prupe.2G143000_v2.0.a1 Prupe.2G143100_v2.0.a1 Prupe.2G179900_v2.0.a1 Prupe.2G180000_v2.0.a1 Prupe.2G180100_v2.0.a1 Prupe.2G180200_v2.0.a1 Prupe.2G180300_v2.0.a1
pyrus_communis	pycom07g10060
rosa_laevigata	RLG00000000617 RLG00000002126 RLG00000002129 RLG00000002130 RLG00000014963 RLG00000014966 RLG00000017055 RLG00000017058 RLG00000017061 RLG00000028520 RLG00000028521 RLG00000029984 RLG00000035987 RLG00000035999 RLG00000036002
rosa_roxburghii	Rroxscaffold_1G00012110 Rroxscaffold_1G00012170 Rroxscaffold_3G00219560 Rroxscaffold_4G00298060 Rroxscaffold_4G00298110 Rroxscaffold_4G00298120 Rroxscaffold_4G00305310 Rroxscaffold_7G00211490
rosa_rugosa	Rorug01G0206500 Rorug01G0261300 Rorug01G0261400 Rorug05G0392600 Rorug07G0339600 Rorug07G0339700
rosa_samantha	Rh1AG223300 Rh1AG223400 Rh1AG275200 Rh1AG275300 Rh1BG189500 Rh1BG189600 Rh1BG190900 Rh1BG242100 Rh1CG258200 Rh1CG258500 Rh1CG258600 Rh1DG218300 Rh1DG218400 Rh1DG270900 Rh1DG271000 Rh2AG144400 Rh2AG144600 Rh2AG145000 Rh2BG149400 Rh2BG149700 Rh2BG150000 Rh2BG150100 Rh2BG150300 Rh2CG150700 Rh2CG150900 Rh2DG149900 Rh2DG150100 Rh2DG150400 Rh5DG481400 Rh6AG063300 Rh6BG056400 Rh6BG056600 Rh6BG057000 Rh6CG056500 Rh7AG494100 Rh7AG494200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	99
AccB1I	GGYRCC	1 cut(s)	324
AcoI	YGGCCR	1 cut(s)	333
AcuI	CTGAAG	1 cut(s)	241
AfiI	CCNNNNNNNGG	1 cut(s)	157
AgsI	TTSAA	3 cut(s)	31, 61, 79
AjnI	CCWGG	1 cut(s)	403
AleI	CACNNNNGTG	1 cut(s)	158
AluBI	AGCT	3 cut(s)	179, 234, 261
AluI	AGCT	3 cut(s)	179, 234, 261
AoxI	GGCC	2 cut(s)	252, 333
ApeKI	GCWGC	2 cut(s)	5, 408
BaeGI	GKGCMC	1 cut(s)	329
BalI	TGGCCA	1 cut(s)	335
BanI	GGYRCC	1 cut(s)	324
BauI	CACGAG	1 cut(s)	291
BbvI	GCAGC	1 cut(s)	420
BcgI	CGANNNNNNTGC	2 cut(s)	110, 144
BciT130I	CCWGG	1 cut(s)	405
BclI	TGATCA	2 cut(s)	115, 181
BfaI	CTAG	1 cut(s)	231
BfmI	CTRYAG	2 cut(s)	6, 92
BfuAI	ACCTGC	1 cut(s)	99
BglII	AGATCT	1 cut(s)	187
BisI	GCNGC	2 cut(s)	6, 409
BlsI	GCNGC	2 cut(s)	7, 410
Bme1390I	CCNGG	1 cut(s)	405
BmiI	GGNNCC	1 cut(s)	326
BmrFI	CCNGG	1 cut(s)	405
BsaBI	GATNNNNATC	1 cut(s)	186
BsaJI	CCNNGG	1 cut(s)	357
Bsc4I	CCNNNNNNNGG	1 cut(s)	157
Bse8I	GATNNNNATC	1 cut(s)	186
BseBI	CCWGG	1 cut(s)	405
BseDI	CCNNGG	1 cut(s)	357
BseGI	GGATG	1 cut(s)	45
BseJI	GATNNNNATC	1 cut(s)	186
BseLI	CCNNNNNNNGG	1 cut(s)	157
BseRI	GAGGAG	1 cut(s)	140
BseSI	GKGCMC	1 cut(s)	329
BseXI	GCAGC	1 cut(s)	420
BsgI	GTGCAG	1 cut(s)	182
BshFI	GGCC	2 cut(s)	254, 335
BshNI	GGYRCC	1 cut(s)	324
BslI	CCNNNNNNNGG	1 cut(s)	157
BsnI	GGCC	2 cut(s)	254, 335
Bsp1286I	GDGCHC	1 cut(s)	329
Bsp143I	GATC	4 cut(s)	115, 165, 181, 187
BspANI	GGCC	2 cut(s)	254, 335
BspLI	GGNNCC	1 cut(s)	326
BspMAI	CTGCAG	2 cut(s)	10, 96
BspMI	ACCTGC	1 cut(s)	99
BspT107I	GGYRCC	1 cut(s)	324
BssECI	CCNNGG	1 cut(s)	357
BssMI	GATC	4 cut(s)	115, 165, 181, 187
BssSI	CACGAG	1 cut(s)	291
Bst2BI	CACGAG	1 cut(s)	291
Bst2UI	CCWGG	1 cut(s)	405
Bst6I	CTCTTC	2 cut(s)	197, 377
BstC8I	GCNNGC	2 cut(s)	236, 240
BstDEI	CTNAG	1 cut(s)	272
BstF5I	GGATG	1 cut(s)	45
BstKTI	GATC	4 cut(s)	118, 168, 184, 190
BstMBI	GATC	4 cut(s)	115, 165, 181, 187
BstNI	CCWGG	1 cut(s)	405
BstSCI	CCNGG	1 cut(s)	403
BstSFI	CTRYAG	2 cut(s)	6, 92
BstSLI	GKGCMC	1 cut(s)	329
BstV1I	GCAGC	1 cut(s)	420
BstX2I	RGATCY	1 cut(s)	187
BstYI	RGATCY	1 cut(s)	187
BsuRI	GGCC	2 cut(s)	254, 335
BtsCI	GGATG	1 cut(s)	45
BveI	ACCTGC	1 cut(s)	99
Cac8I	GCNNGC	2 cut(s)	236, 240
CviAII	CATG	3 cut(s)	214, 337, 394
CviJI	RGCY	9 cut(s)	5, 179, 234, 254, 261, 335, 343, 356, 411
CviKI_1	RGCY	9 cut(s)	5, 179, 234, 254, 261, 335, 343, 356, 411
DdeI	CTNAG	1 cut(s)	272
DpnI	GATC	4 cut(s)	117, 167, 183, 189
DpnII	GATC	4 cut(s)	115, 165, 181, 187
EaeI	YGGCCR	1 cut(s)	333
Eam1104I	CTCTTC	2 cut(s)	197, 377
EarI	CTCTTC	2 cut(s)	197, 377
Eco32I	GATATC	1 cut(s)	173
Eco57I	CTGAAG	1 cut(s)	241
EcoRII	CCWGG	1 cut(s)	403
EcoRV	GATATC	1 cut(s)	173
FaeI	CATG	3 cut(s)	217, 340, 397
FatI	CATG	3 cut(s)	213, 336, 393
FauNDI	CATATG	1 cut(s)	310
FbaI	TGATCA	2 cut(s)	115, 181
Fnu4HI	GCNGC	2 cut(s)	6, 409
FokI	GGATG	1 cut(s)	52
Fsp4HI	GCNGC	2 cut(s)	6, 409
FspBI	CTAG	1 cut(s)	231
GluI	GCNGC	2 cut(s)	6, 409
HaeIII	GGCC	2 cut(s)	254, 335
Hin1II	CATG	3 cut(s)	217, 340, 397
Hpy166II	GTNNAC	1 cut(s)	296
Hpy188I	TCNGA	1 cut(s)	170
Hpy188III	TCNNGA	2 cut(s)	119, 185
Hpy8I	GTNNAC	1 cut(s)	296
HpyAV	CCTTC	1 cut(s)	265
HpyCH4IV	ACGT	1 cut(s)	155
HpyCH4V	TGCA	5 cut(s)	8, 94, 131, 163, 308
HpyF3I	CTNAG	1 cut(s)	272
HpySE526I	ACGT	1 cut(s)	155
Hsp92II	CATG	3 cut(s)	217, 340, 397
Ksp22I	TGATCA	2 cut(s)	115, 181
Kzo9I	GATC	4 cut(s)	115, 165, 181, 187
LpnPI	CCDG	5 cut(s)	104, 189, 307, 390, 417
Lsp1109I	GCAGC	1 cut(s)	420
MaeI	CTAG	1 cut(s)	231
MaeII	ACGT	1 cut(s)	155
MaeIII	GTNAC	1 cut(s)	361
MalI	GATC	4 cut(s)	117, 167, 183, 189
MboI	GATC	4 cut(s)	115, 165, 181, 187
MboII	GAAGA	2 cut(s)	184, 364
MflI	RGATCY	1 cut(s)	187
MhlI	GDGCHC	1 cut(s)	329
MlsI	TGGCCA	1 cut(s)	335
MluCI	AATT	1 cut(s)	55
MluNI	TGGCCA	1 cut(s)	335
MmeI	TCCRAC	1 cut(s)	167
MnlI	CCTC	6 cut(s)	93, 161, 333, 367, 411, 422
Mox20I	TGGCCA	1 cut(s)	335
MscI	TGGCCA	1 cut(s)	335
MseI	TTAA	2 cut(s)	12, 48
MslI	CAYNNNNRTG	2 cut(s)	21, 158
Msp20I	TGGCCA	1 cut(s)	335
MspA1I	CMGCKG	1 cut(s)	179
MspR9I	CCNGG	1 cut(s)	405
MvaI	CCWGG	1 cut(s)	405
NdeI	CATATG	1 cut(s)	310
NdeII	GATC	4 cut(s)	115, 165, 181, 187
NlaIII	CATG	3 cut(s)	217, 340, 397
NlaIV	GGNNCC	1 cut(s)	326
OliI	CACNNNNGTG	1 cut(s)	158
PkrI	GCNGC	2 cut(s)	7, 410
Psp6I	CCWGG	1 cut(s)	403
PspGI	CCWGG	1 cut(s)	403
PspN4I	GGNNCC	1 cut(s)	326
PstI	CTGCAG	2 cut(s)	10, 96
PsuI	RGATCY	1 cut(s)	187
PvuII	CAGCTG	1 cut(s)	179
RseI	CAYNNNNRTG	2 cut(s)	21, 158
SaqAI	TTAA	2 cut(s)	12, 48
SatI	GCNGC	2 cut(s)	6, 409
Sau3AI	GATC	4 cut(s)	115, 165, 181, 187
ScrFI	CCNGG	1 cut(s)	405
SduI	GDGCHC	1 cut(s)	329
SetI	ASST	5 cut(s)	93, 158, 181, 236, 263
SfcI	CTRYAG	2 cut(s)	6, 92
SmiMI	CAYNNNNRTG	2 cut(s)	21, 158
Sse9I	AATT	1 cut(s)	55
SspI	AATATT	2 cut(s)	34, 46
SspMI	CTAG	1 cut(s)	231
StyD4I	CCNGG	1 cut(s)	403
TaiI	ACGT	1 cut(s)	158
TasI	AATT	1 cut(s)	55
Tru1I	TTAA	2 cut(s)	12, 48
Tru9I	TTAA	2 cut(s)	12, 48
TseI	GCWGC	2 cut(s)	5, 408
TspDTI	ATGAA	1 cut(s)	56
XspI	CTAG	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.