RLG00000002129

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000574
Physical Location & Seq
Forward (+)
25951609 .. 25952280
672 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002129

Sequence Viewer

Length: 594 bp
ATGGCCACTGACAATCATCTTCAATTTCAATTGCAATCCACAGTTTTGAATAATCAACGTGGTCACGTGGAAGTCTACCTCAACGTTGTAGTTCCAACTGTGTCTGCTTCTTCATCTTCTTCTTTTACGACTACTGCTTCACCCTTTAACAATCTTGCTTTCATCGTTCCGGTACTCTTAACCTTCGTTCAGATCAAGTTCCCAGGGATCAACATGTGGTCTTCCCTGTTTGAAAAGCACCATACAACCACCATGGCCACCATTGCAAGCTTGCTTCTGTATTGGCTGGCGCTAGAGGCCATGCAGAGATTCCCCGCTTACACTGTCAACTTTCGAGTTGTTAGGACGTTTTCAGGTTTGATCTCAATTGCTTTACTGGTCGCGCTTCTGCTTCCCGACTGTTGGGATCATGTACCATATTACGTGTTGTTCATGTCATATTTGGTTAGCCGGGGGTTTGGGTTTCTACGAATGATAAGAGCTAGTGGGCTCTCCCCGTCGACGGTTATGGATACACATGATCACACTTCGATCTGTAGGCTCTTGCCATTGACGGTCATGGATATGCATGATCGCATGTTGGATTATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

198

Amino Acids

22.26

Weight (kDa)

7.09

Isoelectric Point (pI)

41.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 75, 500
AccII CGCG 1 cut(s) 383
AciI CCGC 1 cut(s) 315
AclI AACGTT 1 cut(s) 84
AclWI GGATC 2 cut(s) 215, 414
AcoI YGGCCR 2 cut(s) 3, 255
AcvI CACGTG 1 cut(s) 67
AfaI GTAC 2 cut(s) 174, 414
AfiI CCNNNNNNNGG 2 cut(s) 402, 502
AflIII ACRYGT 2 cut(s) 213, 423
AgsI TTSAA 4 cut(s) 23, 29, 49, 233
AjnI CCWGG 1 cut(s) 202
AluBI AGCT 2 cut(s) 270, 482
AluI AGCT 2 cut(s) 270, 482
AlwI GGATC 2 cut(s) 215, 414
AoxI GGCC 3 cut(s) 3, 255, 297
AspLEI GCGC 2 cut(s) 292, 385
AsuC2I CCSGG 1 cut(s) 452
AsuHPI GGTGA 1 cut(s) 132
BalI TGGCCA 2 cut(s) 5, 257
BanII GRGCYC 1 cut(s) 492
BbrPI CACGTG 1 cut(s) 67
BbsI GAAGAC 1 cut(s) 213
BciT130I CCWGG 1 cut(s) 204
BciVI GTATCC 1 cut(s) 505
BclI TGATCA 1 cut(s) 520
BcnI CCSGG 1 cut(s) 452
BfaI CTAG 2 cut(s) 293, 483
BfmI CTRYAG 1 cut(s) 535
BfoI RGCGCY 1 cut(s) 293
BfuI GTATCC 1 cut(s) 505
Bme1390I CCNGG 2 cut(s) 204, 452
BmrFI CCNGG 2 cut(s) 204, 452
BpiI GAAGAC 1 cut(s) 213
BpuMI CCSGG 1 cut(s) 452
BsaAI YACGTR 2 cut(s) 67, 424
BsaJI CCNNGG 4 cut(s) 202, 203, 252, 451
BsaWI WCCGGW 1 cut(s) 169
Bsc4I CCNNNNNNNGG 2 cut(s) 402, 502
Bse1I ACTGG 1 cut(s) 381
Bse3DI GCAATG 1 cut(s) 261
BseBI CCWGG 1 cut(s) 204
BseDI CCNNGG 4 cut(s) 202, 203, 252, 451
BseLI CCNNNNNNNGG 2 cut(s) 402, 502
BseMI GCAATG 1 cut(s) 261
BseNI ACTGG 1 cut(s) 381
Bsh1236I CGCG 1 cut(s) 383
BshFI GGCC 3 cut(s) 5, 257, 299
BsiSI CCGG 2 cut(s) 170, 451
BslI CCNNNNNNNGG 2 cut(s) 402, 502
BsnI GGCC 3 cut(s) 5, 257, 299
Bsp1286I GDGCHC 1 cut(s) 492
Bsp143I GATC 7 cut(s) 192, 207, 360, 406, 520, 531, 571
Bsp19I CCATGG 1 cut(s) 252
BspACI CCGC 1 cut(s) 315
BspANI GGCC 3 cut(s) 5, 257, 299
BspFNI CGCG 1 cut(s) 383
BspPI GGATC 2 cut(s) 215, 414
BsrDI GCAATG 1 cut(s) 261
BsrI ACTGG 1 cut(s) 381
BssECI CCNNGG 4 cut(s) 202, 203, 252, 451
BssMI GATC 7 cut(s) 192, 207, 360, 406, 520, 531, 571
BssT1I CCWWGG 1 cut(s) 252
Bst2UI CCWGG 1 cut(s) 204
Bst4CI ACNGT 6 cut(s) 43, 100, 325, 401, 505, 556
BstBAI YACGTR 2 cut(s) 67, 424
BstC8I GCNNGC 3 cut(s) 268, 272, 288
BstDSI CCRYGG 1 cut(s) 252
BstFNI CGCG 1 cut(s) 383
BstH2I RGCGCY 1 cut(s) 293
BstHHI GCGC 2 cut(s) 292, 385
BstKTI GATC 7 cut(s) 195, 210, 363, 409, 523, 534, 574
BstMBI GATC 7 cut(s) 192, 207, 360, 406, 520, 531, 571
BstMWI GCNNNNNNNGC 2 cut(s) 263, 296
BstNI CCWGG 1 cut(s) 204
BstNSI RCATGY 2 cut(s) 217, 580
BstSCI CCNGG 2 cut(s) 202, 450
BstSFI CTRYAG 1 cut(s) 535
BstUI CGCG 1 cut(s) 383
BstV2I GAAGAC 1 cut(s) 213
BsuI GTATCC 1 cut(s) 505
BsuRI GGCC 3 cut(s) 5, 257, 299
BtgI CCRYGG 1 cut(s) 252
BtsIMutI CAGTG 2 cut(s) 6, 321
Cac8I GCNNGC 3 cut(s) 268, 272, 288
CfoI GCGC 2 cut(s) 292, 385
Csp6I GTAC 2 cut(s) 173, 413
CviAII CATG 9 cut(s) 214, 253, 301, 410, 433, 518, 559, 569, 577
CviJI RGCY 9 cut(s) 5, 257, 270, 286, 299, 450, 482, 490, 541
CviKI_1 RGCY 9 cut(s) 5, 257, 270, 286, 299, 450, 482, 490, 541
CviQI GTAC 2 cut(s) 173, 413
DpnI GATC 7 cut(s) 194, 209, 362, 408, 522, 533, 573
DpnII GATC 7 cut(s) 192, 207, 360, 406, 520, 531, 571
EaeI YGGCCR 2 cut(s) 3, 255
Eco130I CCWWGG 1 cut(s) 252
Eco24I GRGCYC 1 cut(s) 492
Eco72I CACGTG 1 cut(s) 67
EcoRII CCWGG 1 cut(s) 202
EcoT14I CCWWGG 1 cut(s) 252
EcoT22I ATGCAT 1 cut(s) 570
EcoT38I GRGCYC 1 cut(s) 492
ErhI CCWWGG 1 cut(s) 252
FaeI CATG 9 cut(s) 217, 256, 304, 413, 436, 521, 562, 572, 580
FatI CATG 9 cut(s) 213, 252, 300, 409, 432, 517, 558, 568, 576
FauI CCCGC 1 cut(s) 322
FbaI TGATCA 1 cut(s) 520
FblI GTMKAC 2 cut(s) 75, 500
FriOI GRGCYC 1 cut(s) 492
FspBI CTAG 2 cut(s) 293, 483
GlaI GCGC 2 cut(s) 291, 384
HaeII RGCGCY 1 cut(s) 293
HaeIII GGCC 3 cut(s) 5, 257, 299
HapII CCGG 2 cut(s) 170, 451
HhaI GCGC 2 cut(s) 292, 385
Hin1II CATG 9 cut(s) 217, 256, 304, 413, 436, 521, 562, 572, 580
Hin6I GCGC 2 cut(s) 290, 383
HinP1I GCGC 2 cut(s) 290, 383
HincII GTYRAC 2 cut(s) 328, 501
HindII GTYRAC 2 cut(s) 328, 501
HindIII AAGCTT 1 cut(s) 268
HinfI GANTC 1 cut(s) 309
HpaII CCGG 2 cut(s) 170, 451
HphI GGTGA 1 cut(s) 132
Hpy166II GTNNAC 3 cut(s) 76, 328, 501
Hpy188I TCNGA 1 cut(s) 192
Hpy188III TCNNGA 1 cut(s) 395
Hpy8I GTNNAC 3 cut(s) 76, 328, 501
Hpy99I CGWCG 2 cut(s) 502, 505
HpyAV CCTTC 1 cut(s) 193
HpyCH4III ACNGT 6 cut(s) 43, 100, 325, 401, 505, 556
HpyCH4IV ACGT 5 cut(s) 58, 66, 84, 347, 423
HpyCH4V TGCA 4 cut(s) 34, 266, 304, 568
HpyF10VI GCNNNNNNNGC 2 cut(s) 263, 296
HpySE526I ACGT 5 cut(s) 58, 66, 84, 347, 423
Hsp92II CATG 9 cut(s) 217, 256, 304, 413, 436, 521, 562, 572, 580
HspAI GCGC 2 cut(s) 290, 383
Ksp22I TGATCA 1 cut(s) 520
Kzo9I GATC 7 cut(s) 192, 207, 360, 406, 520, 531, 571
LpnPI CCDG 8 cut(s) 183, 189, 216, 239, 272, 339, 362, 464
MaeI CTAG 2 cut(s) 293, 483
MaeII ACGT 5 cut(s) 58, 66, 84, 347, 423
MaeIII GTNAC 1 cut(s) 62
MalI GATC 7 cut(s) 194, 209, 362, 408, 522, 533, 573
MboI GATC 7 cut(s) 192, 207, 360, 406, 520, 531, 571
MboII GAAGA 5 cut(s) 11, 102, 108, 111, 213
MfeI CAATTG 2 cut(s) 29, 366
MhlI GDGCHC 1 cut(s) 492
MlsI TGGCCA 2 cut(s) 5, 257
MluCI AATT 3 cut(s) 23, 29, 366
MluNI TGGCCA 2 cut(s) 5, 257
MmeI TCCRAC 2 cut(s) 119, 561
MnlI CCTC 2 cut(s) 89, 289
Mox20I TGGCCA 2 cut(s) 5, 257
Mph1103I ATGCAT 1 cut(s) 570
MscI TGGCCA 2 cut(s) 5, 257
MseI TTAA 2 cut(s) 147, 179
MslI CAYNNNNRTG 1 cut(s) 563
Msp20I TGGCCA 2 cut(s) 5, 257
MspI CCGG 2 cut(s) 170, 451
MspR9I CCNGG 2 cut(s) 204, 452
MunI CAATTG 2 cut(s) 29, 366
MvaI CCWGG 1 cut(s) 204
MvnI CGCG 1 cut(s) 383
MwoI GCNNNNNNNGC 2 cut(s) 263, 296
NciI CCSGG 1 cut(s) 452
NcoI CCATGG 1 cut(s) 252
NdeII GATC 7 cut(s) 192, 207, 360, 406, 520, 531, 571
NlaIII CATG 9 cut(s) 217, 256, 304, 413, 436, 521, 562, 572, 580
NmuCI GTSAC 1 cut(s) 62
NsiI ATGCAT 1 cut(s) 570
NspI RCATGY 2 cut(s) 217, 580
PasI CCCWGGG 1 cut(s) 203
PciI ACATGT 1 cut(s) 213
PfeI GAWTC 1 cut(s) 309
PmaCI CACGTG 1 cut(s) 67
PmlI CACGTG 1 cut(s) 67
Ppu21I YACGTR 2 cut(s) 67, 424
PscI ACATGT 1 cut(s) 213
Psp1406I AACGTT 1 cut(s) 84
Psp6I CCWGG 1 cut(s) 202
PspCI CACGTG 1 cut(s) 67
PspGI CCWGG 1 cut(s) 202
RsaI GTAC 2 cut(s) 174, 414
RsaNI GTAC 2 cut(s) 173, 413
RseI CAYNNNNRTG 1 cut(s) 563
SalI GTCGAC 1 cut(s) 499
SaqAI TTAA 2 cut(s) 147, 179
Sau3AI GATC 7 cut(s) 192, 207, 360, 406, 520, 531, 571
ScrFI CCNGG 2 cut(s) 204, 452
SduI GDGCHC 1 cut(s) 492
SfcI CTRYAG 1 cut(s) 535
SgrDI CGTCGACG 1 cut(s) 499
SmiMI CAYNNNNRTG 1 cut(s) 563
Sse9I AATT 3 cut(s) 23, 29, 366
SsiI CCGC 1 cut(s) 315
SspMI CTAG 2 cut(s) 293, 483
StyD4I CCNGG 2 cut(s) 202, 450
StyI CCWWGG 1 cut(s) 252
TaaI ACNGT 6 cut(s) 43, 100, 325, 401, 505, 556
TaiI ACGT 5 cut(s) 61, 69, 87, 350, 426
TaqI TCGA 3 cut(s) 334, 500, 530
TasI AATT 3 cut(s) 23, 29, 366
TfiI GAWTC 1 cut(s) 309
Tru1I TTAA 2 cut(s) 147, 179
Tru9I TTAA 2 cut(s) 147, 179
TscAI CASTG 2 cut(s) 13, 328
TseFI GTSAC 1 cut(s) 62
Tsp45I GTSAC 1 cut(s) 62
TspDTI ATGAA 3 cut(s) 102, 151, 421
TspRI CASTG 2 cut(s) 13, 328
XceI RCATGY 2 cut(s) 217, 580
XmiI GTMKAC 2 cut(s) 75, 500
XspI CTAG 2 cut(s) 293, 483
Zsp2I ATGCAT 1 cut(s) 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.