Rh6AG063300

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000574
Physical Location & Seq
Reverse (-)
9366379 .. 9367005
627 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG063300.1

Sequence Viewer

Length: 627 bp
ATGGCTGATTTCCGCCATCAATGGCCATCCTTGGTCTTACCGCCTGAACGTGATAATATCTTCGTCATATTCAACATTGTTCTAGTAGACTTTGCAAGACAAACAGCCCCCTCCACCTTCGCCATTTTCACTTTCATCGTTCCAATACTCCTCACCTTTATCCAGATCAGATTCCCAGCTGCCGGAATACTGTCTTCTCCATTTGAAACCCACCATACCAAGTTCATGGTAGCCATGCTCAGCTTACTTGGCTTCTGTTGCTTTGCCATTGGAGCTACTCTAAACTTATTCCCAACTCACGCTAGAAAACTTTGCATGGCTATGAAGTTAACAGCTTCACTCTCAGTGGCTTCACTTGTTTCTCTTCTGCTTCCCAAGCCGTGGGACCACGTGCCGTACTTGACCTACTTCTTGTATAATACACGCCGGTGTCTTGGGTTGGTCATAAATATATTTTTGGCTTATTGCCACCACGTTGCAAGTGGATTTGTGCGTACCTTATGCGCGCATCAACAGCAGTTGAGAAGAATGCGCCCACTGTTGCCGCTGACAGTCAGTCAACCCAATGTGTCCAACCAGCCAATTGTGAATCATGGATCGATCACGGAAGTCAGAATCCTCCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

208

Amino Acids

23.54

Weight (kDa)

9.74

Isoelectric Point (pI)

49.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 381
AccI GTMKAC 1 cut(s) 87
AccII CGCG 1 cut(s) 506
AciI CCGC 3 cut(s) 13, 41, 545
AclWI GGATC 1 cut(s) 604
AcoI YGGCCR 1 cut(s) 23
AcvI CACGTG 1 cut(s) 391
AfaI GTAC 2 cut(s) 398, 496
AfiI CCNNNNNNNGG 2 cut(s) 182, 381
AgsI TTSAA 2 cut(s) 73, 206
AhdI GACNNNNNGTC 1 cut(s) 555
AleI CACNNNNGTG 1 cut(s) 427
AluBI AGCT 4 cut(s) 179, 243, 275, 335
AluI AGCT 4 cut(s) 179, 243, 275, 335
AlwI GGATC 1 cut(s) 604
AoxI GGCC 1 cut(s) 23
ApeKI GCWGC 1 cut(s) 179
AspLEI GCGC 3 cut(s) 506, 508, 534
AspS9I GGNCC 1 cut(s) 385
AsuHPI GGTGA 1 cut(s) 145
AvaII GGWCC 1 cut(s) 385
BalI TGGCCA 1 cut(s) 25
BbrPI CACGTG 1 cut(s) 391
BbsI GAAGAC 1 cut(s) 186
BbvI GCAGC 1 cut(s) 166
BccI CCATC 2 cut(s) 24, 34
BceAI ACGGC 2 cut(s) 364, 379
BfaI CTAG 2 cut(s) 83, 303
BisI GCNGC 2 cut(s) 180, 545
BlpI GCTNAGC 1 cut(s) 239
BlsI GCNGC 2 cut(s) 181, 546
Bme18I GGWCC 1 cut(s) 385
BmeRI GACNNNNNGTC 1 cut(s) 555
BmgT120I GGNCC 1 cut(s) 385
BmiI GGNNCC 1 cut(s) 386
BmsI GCATC 1 cut(s) 517
BpiI GAAGAC 1 cut(s) 186
Bpu1102I GCTNAGC 1 cut(s) 239
Bsa29I ATCGAT 1 cut(s) 599
BsaAI YACGTR 1 cut(s) 391
BsaJI CCNNGG 2 cut(s) 30, 380
Bsc4I CCNNNNNNNGG 2 cut(s) 182, 381
Bse118I RCCGGY 1 cut(s) 426
BseCI ATCGAT 1 cut(s) 599
BseDI CCNNGG 2 cut(s) 30, 380
BseGI GGATG 1 cut(s) 26
BseLI CCNNNNNNNGG 2 cut(s) 182, 381
BseMII CTCAG 2 cut(s) 253, 357
BsePI GCGCGC 1 cut(s) 504
BseRI GAGGAG 1 cut(s) 140
BseXI GCAGC 1 cut(s) 166
BseYI CCCAGC 1 cut(s) 175
Bsh1236I CGCG 1 cut(s) 506
BshFI GGCC 1 cut(s) 25
BshVI ATCGAT 1 cut(s) 599
BsiSI CCGG 2 cut(s) 183, 427
BslFI GGGAC 1 cut(s) 398
BslI CCNNNNNNNGG 2 cut(s) 182, 381
BsmFI GGGAC 1 cut(s) 398
BsmI GAATGC 1 cut(s) 534
BsnI GGCC 1 cut(s) 25
Bsp143I GATC 3 cut(s) 165, 596, 600
Bsp1720I GCTNAGC 1 cut(s) 239
BspACI CCGC 3 cut(s) 13, 41, 545
BspANI GGCC 1 cut(s) 25
BspCNI CTCAG 2 cut(s) 252, 356
BspDI ATCGAT 1 cut(s) 599
BspFNI CGCG 1 cut(s) 506
BspLI GGNNCC 1 cut(s) 386
BspPI GGATC 1 cut(s) 604
BsrFI RCCGGY 1 cut(s) 426
BssAI RCCGGY 1 cut(s) 426
BssECI CCNNGG 2 cut(s) 30, 380
BssHII GCGCGC 1 cut(s) 504
BssMI GATC 3 cut(s) 165, 596, 600
BssT1I CCWWGG 1 cut(s) 30
Bst4CI ACNGT 3 cut(s) 192, 540, 553
Bst6I CTCTTC 1 cut(s) 369
BstBAI YACGTR 1 cut(s) 391
BstC8I GCNNGC 1 cut(s) 506
BstDEI CTNAG 2 cut(s) 239, 343
BstDSI CCRYGG 1 cut(s) 380
BstF5I GGATG 1 cut(s) 26
BstFNI CGCG 1 cut(s) 506
BstHHI GCGC 3 cut(s) 506, 508, 534
BstKTI GATC 3 cut(s) 168, 599, 603
BstMBI GATC 3 cut(s) 165, 596, 600
BstMWI GCNNNNNNNGC 5 cut(s) 249, 258, 272, 376, 514
BstUI CGCG 1 cut(s) 506
BstV1I GCAGC 1 cut(s) 166
BstV2I GAAGAC 1 cut(s) 186
BstXI CCANNNNNNTGG 1 cut(s) 226
Bsu15I ATCGAT 1 cut(s) 599
BsuRI GGCC 1 cut(s) 25
BsuTUI ATCGAT 1 cut(s) 599
BtgI CCRYGG 1 cut(s) 380
BtsCI GGATG 1 cut(s) 26
BtsIMutI CAGTG 2 cut(s) 351, 536
Cac8I GCNNGC 1 cut(s) 506
CfoI GCGC 3 cut(s) 506, 508, 534
Cfr10I RCCGGY 1 cut(s) 426
Cfr13I GGNCC 1 cut(s) 385
ClaI ATCGAT 1 cut(s) 599
Csp6I GTAC 2 cut(s) 397, 495
CviAII CATG 4 cut(s) 226, 235, 316, 593
CviQI GTAC 2 cut(s) 397, 495
DdeI CTNAG 2 cut(s) 239, 343
DpnI GATC 3 cut(s) 167, 598, 602
DpnII GATC 3 cut(s) 165, 596, 600
DriI GACNNNNNGTC 1 cut(s) 555
EaeI YGGCCR 1 cut(s) 23
Eam1104I CTCTTC 1 cut(s) 369
Eam1105I GACNNNNNGTC 1 cut(s) 555
EarI CTCTTC 1 cut(s) 369
Eco130I CCWWGG 1 cut(s) 30
Eco47I GGWCC 1 cut(s) 385
Eco72I CACGTG 1 cut(s) 391
EcoT14I CCWWGG 1 cut(s) 30
ErhI CCWWGG 1 cut(s) 30
FaeI CATG 4 cut(s) 229, 238, 319, 596
FaqI GGGAC 1 cut(s) 398
FatI CATG 4 cut(s) 225, 234, 315, 592
FblI GTMKAC 1 cut(s) 87
Fnu4HI GCNGC 2 cut(s) 180, 545
FokI GGATG 1 cut(s) 13
Fsp4HI GCNGC 2 cut(s) 180, 545
FspBI CTAG 2 cut(s) 83, 303
GlaI GCGC 3 cut(s) 505, 507, 533
GluI GCNGC 2 cut(s) 180, 545
GsaI CCCAGC 1 cut(s) 179
HaeIII GGCC 1 cut(s) 25
HapII CCGG 2 cut(s) 183, 427
HhaI GCGC 3 cut(s) 506, 508, 534
Hin1II CATG 4 cut(s) 229, 238, 319, 596
Hin6I GCGC 3 cut(s) 504, 506, 532
HinP1I GCGC 3 cut(s) 504, 506, 532
HincII GTYRAC 2 cut(s) 330, 560
HindII GTYRAC 2 cut(s) 330, 560
HinfI GANTC 3 cut(s) 171, 589, 615
HpaI GTTAAC 1 cut(s) 330
HpaII CCGG 2 cut(s) 183, 427
HphI GGTGA 1 cut(s) 145
Hpy166II GTNNAC 3 cut(s) 88, 330, 560
Hpy188I TCNGA 2 cut(s) 170, 614
Hpy188III TCNNGA 1 cut(s) 163
Hpy8I GTNNAC 3 cut(s) 88, 330, 560
HpyAV CCTTC 1 cut(s) 127
HpyCH4III ACNGT 3 cut(s) 192, 540, 553
HpyCH4IV ACGT 3 cut(s) 49, 390, 474
HpyCH4V TGCA 3 cut(s) 95, 315, 479
HpyF10VI GCNNNNNNNGC 5 cut(s) 249, 258, 272, 376, 514
HpyF3I CTNAG 2 cut(s) 239, 343
HpySE526I ACGT 3 cut(s) 49, 390, 474
Hsp92II CATG 4 cut(s) 229, 238, 319, 596
HspAI GCGC 3 cut(s) 504, 506, 532
KspAI GTTAAC 1 cut(s) 330
Kzo9I GATC 3 cut(s) 165, 596, 600
LmnI GCTCC 1 cut(s) 272
LpnPI CCDG 6 cut(s) 57, 176, 189, 196, 440, 590
Lsp1109I GCAGC 1 cut(s) 166
LweI GCATC 1 cut(s) 517
MaeI CTAG 2 cut(s) 83, 303
MaeII ACGT 3 cut(s) 49, 390, 474
MalI GATC 3 cut(s) 167, 598, 602
MboI GATC 3 cut(s) 165, 596, 600
MboII GAAGA 4 cut(s) 52, 186, 356, 537
MfeI CAATTG 1 cut(s) 582
MlsI TGGCCA 1 cut(s) 25
MluCI AATT 1 cut(s) 582
MluNI TGGCCA 1 cut(s) 25
MmeI TCCRAC 1 cut(s) 597
MnlI CCTC 2 cut(s) 121, 161
Mox20I TGGCCA 1 cut(s) 25
MscI TGGCCA 1 cut(s) 25
MseI TTAA 1 cut(s) 329
MslI CAYNNNNRTG 2 cut(s) 320, 427
Msp20I TGGCCA 1 cut(s) 25
MspA1I CMGCKG 2 cut(s) 179, 547
MspI CCGG 2 cut(s) 183, 427
MunI CAATTG 1 cut(s) 582
Mva1269I GAATGC 1 cut(s) 534
MvnI CGCG 1 cut(s) 506
MwoI GCNNNNNNNGC 5 cut(s) 249, 258, 272, 376, 514
NdeII GATC 3 cut(s) 165, 596, 600
NlaIII CATG 4 cut(s) 229, 238, 319, 596
NlaIV GGNNCC 1 cut(s) 386
OliI CACNNNNGTG 1 cut(s) 427
PauI GCGCGC 1 cut(s) 504
PctI GAATGC 1 cut(s) 534
PfeI GAWTC 3 cut(s) 171, 589, 615
PflMI CCANNNNNTGG 1 cut(s) 381
PkrI GCNGC 2 cut(s) 181, 546
PmaCI CACGTG 1 cut(s) 391
PmlI CACGTG 1 cut(s) 391
Ppu21I YACGTR 1 cut(s) 391
PspCI CACGTG 1 cut(s) 391
PspFI CCCAGC 1 cut(s) 175
PspN4I GGNNCC 1 cut(s) 386
PspPI GGNCC 1 cut(s) 385
PteI GCGCGC 1 cut(s) 504
PvuII CAGCTG 1 cut(s) 179
RsaI GTAC 2 cut(s) 398, 496
RsaNI GTAC 2 cut(s) 397, 495
RseI CAYNNNNRTG 2 cut(s) 320, 427
SaqAI TTAA 1 cut(s) 329
SatI GCNGC 2 cut(s) 180, 545
Sau3AI GATC 3 cut(s) 165, 596, 600
Sau96I GGNCC 1 cut(s) 385
SfaNI GCATC 1 cut(s) 517
SgrAI CRCCGGYG 1 cut(s) 426
SinI GGWCC 1 cut(s) 385
SmiMI CAYNNNNRTG 2 cut(s) 320, 427
Sse9I AATT 1 cut(s) 582
SsiI CCGC 3 cut(s) 13, 41, 545
SspMI CTAG 2 cut(s) 83, 303
StyI CCWWGG 1 cut(s) 30
TaaI ACNGT 3 cut(s) 192, 540, 553
TaiI ACGT 3 cut(s) 52, 393, 477
TaqI TCGA 1 cut(s) 599
TasI AATT 1 cut(s) 582
TauI GCSGC 1 cut(s) 547
TfiI GAWTC 3 cut(s) 171, 589, 615
Tru1I TTAA 1 cut(s) 329
Tru9I TTAA 1 cut(s) 329
TscAI CASTG 2 cut(s) 351, 543
TseI GCWGC 1 cut(s) 179
TspDTI ATGAA 3 cut(s) 124, 214, 338
TspGWI ACGGA 1 cut(s) 620
TspRI CASTG 2 cut(s) 351, 543
Van91I CCANNNNNTGG 1 cut(s) 381
VpaK11BI GGWCC 1 cut(s) 385
XcmI CCANNNNNNNNNTGG 1 cut(s) 479
XmiI GTMKAC 1 cut(s) 87
XspI CTAG 2 cut(s) 83, 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.