Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0000574

Physical Location & Seq

Genomic Coordinates Forward (+)

22157020 .. 22157475

Gene Structure 456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1210800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGCCATGGCATGCCATCTTTGCATTTCTAAATCCATTGCTAATTGGCGTACTTCAAGTTAAATGTCAAGGTGCAACCGAATCTCCATTCGACACACACCCAAGACACATGTGGATATTTTTGTCGACAACGTTAGTCTACTGCTTTGCACTTGCAGCTAACATAAAATCACGCCGTAACTGCACTGCCATATTCTACTCTCGAATGTCCGGTCATATTGCTCTACTCACCGGCTCTCTCTCTTCAGTCTCTTTAGTCTCCATCTTCTTTCCGAGCGTGCTTGATGAGCAACTTGTTTTCTTCTCATGGATCGTTATGCCTTTGATTGTTGGAAGGACTTTGATTGGTCAAGTGTGTAAATACATTTGCAAATCTACAGCGAATGCAGTGCTCTTAGTTCACAGCATTTGGCAGGGGTTTGCAAGAAGGACGGAGCAGCCACAATTGCCGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

152

Amino Acids

16.94

Weight (kDa)

9.4

Isoelectric Point (pI)

57.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000574)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13031 FvH4_3g38201 FvH4_7g11471 FvH4_7g15661
malus_domestica	MD02G1210800.v1.1 MD07G1115400.v1.1
prunus_persica	Prupe.2G076600_v2.0.a1 Prupe.2G137400_v2.0.a1 Prupe.2G142700_v2.0.a1 Prupe.2G143000_v2.0.a1 Prupe.2G143100_v2.0.a1 Prupe.2G179900_v2.0.a1 Prupe.2G180000_v2.0.a1 Prupe.2G180100_v2.0.a1 Prupe.2G180200_v2.0.a1 Prupe.2G180300_v2.0.a1
pyrus_communis	pycom07g10060
rosa_laevigata	RLG00000000617 RLG00000002126 RLG00000002129 RLG00000002130 RLG00000014963 RLG00000014966 RLG00000017055 RLG00000017058 RLG00000017061 RLG00000028520 RLG00000028521 RLG00000029984 RLG00000035987 RLG00000035999 RLG00000036002
rosa_roxburghii	Rroxscaffold_1G00012110 Rroxscaffold_1G00012170 Rroxscaffold_3G00219560 Rroxscaffold_4G00298060 Rroxscaffold_4G00298110 Rroxscaffold_4G00298120 Rroxscaffold_4G00305310 Rroxscaffold_7G00211490
rosa_rugosa	Rorug01G0206500 Rorug01G0261300 Rorug01G0261400 Rorug05G0392600 Rorug07G0339600 Rorug07G0339700
rosa_samantha	Rh1AG223300 Rh1AG223400 Rh1AG275200 Rh1AG275300 Rh1BG189500 Rh1BG189600 Rh1BG190900 Rh1BG242100 Rh1CG258200 Rh1CG258500 Rh1CG258600 Rh1DG218300 Rh1DG218400 Rh1DG270900 Rh1DG271000 Rh2AG144400 Rh2AG144600 Rh2AG145000 Rh2BG149400 Rh2BG149700 Rh2BG150000 Rh2BG150100 Rh2BG150300 Rh2CG150700 Rh2CG150900 Rh2DG149900 Rh2DG150100 Rh2DG150400 Rh5DG481400 Rh6AG063300 Rh6BG056400 Rh6BG056600 Rh6BG057000 Rh6CG056500 Rh7AG494100 Rh7AG494200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	125, 138
AclI	AACGTT	1 cut(s)	131
AclWI	GGATC	1 cut(s)	317
AcuI	CTGAAG	1 cut(s)	228
AfaI	GTAC	1 cut(s)	51
AflIII	ACRYGT	1 cut(s)	108
AgsI	TTSAA	1 cut(s)	56
AluBI	AGCT	1 cut(s)	158
AluI	AGCT	1 cut(s)	158
Alw21I	GWGCWC	1 cut(s)	393
Alw26I	GTCTC	2 cut(s)	253, 262
AlwI	GGATC	1 cut(s)	317
ApeKI	GCWGC	2 cut(s)	155, 436
ArsI	GACNNNNNNTTYG	2 cut(s)	196, 228
AsuHPI	GGTGA	1 cut(s)	220
Bbv12I	GWGCWC	1 cut(s)	393
BbvI	GCAGC	2 cut(s)	167, 448
BccI	CCATC	2 cut(s)	23, 269
BceAI	ACGGC	1 cut(s)	159
BcgI	CGANNNNNNTGC	2 cut(s)	370, 404
BcoDI	GTCTC	2 cut(s)	253, 262
BfmI	CTRYAG	1 cut(s)	375
BisI	GCNGC	2 cut(s)	156, 437
BlsI	GCNGC	2 cut(s)	157, 438
BsaJI	CCNNGG	1 cut(s)	5
BsaWI	WCCGGW	1 cut(s)	209
BsaXI	ACNNNNNCTCC	2 cut(s)	67, 97
Bse118I	RCCGGY	2 cut(s)	230, 448
Bse3DI	GCAATG	1 cut(s)	35
BseDI	CCNNGG	1 cut(s)	5
BseMI	GCAATG	1 cut(s)	35
BseXI	GCAGC	2 cut(s)	167, 448
BsgI	GTGCAG	1 cut(s)	166
BsiHKAI	GWGCWC	1 cut(s)	393
BsiSI	CCGG	3 cut(s)	210, 231, 449
BsmAI	GTCTC	2 cut(s)	253, 262
BsmI	GAATGC	1 cut(s)	388
Bsp1286I	GDGCHC	1 cut(s)	393
Bsp143I	GATC	1 cut(s)	309
Bsp19I	CCATGG	1 cut(s)	5
BspPI	GGATC	1 cut(s)	317
BsrDI	GCAATG	1 cut(s)	35
BsrFI	RCCGGY	2 cut(s)	230, 448
BssAI	RCCGGY	2 cut(s)	230, 448
BssECI	CCNNGG	1 cut(s)	5
BssMI	GATC	1 cut(s)	309
BssT1I	CCWWGG	1 cut(s)	5
Bst6I	CTCTTC	1 cut(s)	247
BstC8I	GCNNGC	2 cut(s)	12, 278
BstDEI	CTNAG	1 cut(s)	394
BstDSI	CCRYGG	1 cut(s)	5
BstKTI	GATC	1 cut(s)	312
BstMAI	GTCTC	2 cut(s)	253, 262
BstMBI	GATC	1 cut(s)	309
BstMWI	GCNNNNNNNGC	5 cut(s)	20, 155, 180, 286, 445
BstNSI	RCATGY	2 cut(s)	14, 112
BstSFI	CTRYAG	1 cut(s)	375
BstV1I	GCAGC	2 cut(s)	167, 448
BtgI	CCRYGG	1 cut(s)	5
BtsI	GCAGTG	2 cut(s)	183, 393
BtsIMutI	CAGTG	2 cut(s)	183, 393
Cac8I	GCNNGC	2 cut(s)	12, 278
Cfr10I	RCCGGY	2 cut(s)	230, 448
Csp6I	GTAC	1 cut(s)	50
CviAII	CATG	4 cut(s)	6, 11, 109, 306
CviJI	RGCY	3 cut(s)	158, 234, 439
CviKI_1	RGCY	3 cut(s)	158, 234, 439
CviQI	GTAC	1 cut(s)	50
DdeI	CTNAG	1 cut(s)	394
DpnI	GATC	1 cut(s)	311
DpnII	GATC	1 cut(s)	309
Eam1104I	CTCTTC	1 cut(s)	247
EarI	CTCTTC	1 cut(s)	247
Eco130I	CCWWGG	1 cut(s)	5
Eco57I	CTGAAG	1 cut(s)	228
EcoT14I	CCWWGG	1 cut(s)	5
ErhI	CCWWGG	1 cut(s)	5
FaeI	CATG	4 cut(s)	9, 14, 112, 309
FaiI	YATR	8 cut(s)	7, 12, 110, 164, 191, 216, 307, 317
FatI	CATG	4 cut(s)	5, 10, 108, 305
FblI	GTMKAC	2 cut(s)	125, 138
Fnu4HI	GCNGC	2 cut(s)	156, 437
Fsp4HI	GCNGC	2 cut(s)	156, 437
GluI	GCNGC	2 cut(s)	156, 437
HapII	CCGG	3 cut(s)	210, 231, 449
Hin1II	CATG	4 cut(s)	9, 14, 112, 309
HincII	GTYRAC	1 cut(s)	126
HindII	GTYRAC	1 cut(s)	126
HinfI	GANTC	1 cut(s)	80
HpaII	CCGG	3 cut(s)	210, 231, 449
HphI	GGTGA	1 cut(s)	220
Hpy166II	GTNNAC	3 cut(s)	126, 139, 400
Hpy188I	TCNGA	1 cut(s)	273
Hpy188III	TCNNGA	1 cut(s)	201
Hpy8I	GTNNAC	3 cut(s)	126, 139, 400
HpyAV	CCTTC	2 cut(s)	327, 420
HpyCH4IV	ACGT	1 cut(s)	131
HpyCH4V	TGCA	8 cut(s)	23, 74, 149, 155, 183, 369, 386, 422
HpyF10VI	GCNNNNNNNGC	5 cut(s)	20, 155, 180, 286, 445
HpyF3I	CTNAG	1 cut(s)	394
HpySE526I	ACGT	1 cut(s)	131
Hsp92II	CATG	4 cut(s)	9, 14, 112, 309
Kzo9I	GATC	1 cut(s)	309
LmnI	GCTCC	1 cut(s)	433
LpnPI	CCDG	3 cut(s)	223, 244, 398
Lsp1109I	GCAGC	2 cut(s)	167, 448
MaeII	ACGT	1 cut(s)	131
MaeIII	GTNAC	1 cut(s)	176
MalI	GATC	1 cut(s)	311
MboI	GATC	1 cut(s)	309
MboII	GAAGA	3 cut(s)	234, 256, 292
MfeI	CAATTG	1 cut(s)	443
MhlI	GDGCHC	1 cut(s)	393
MluCI	AATT	2 cut(s)	42, 443
MmeI	TCCRAC	1 cut(s)	310
MseI	TTAA	1 cut(s)	60
MspI	CCGG	3 cut(s)	210, 231, 449
MunI	CAATTG	1 cut(s)	443
Mva1269I	GAATGC	1 cut(s)	388
MwoI	GCNNNNNNNGC	5 cut(s)	20, 155, 180, 286, 445
NcoI	CCATGG	1 cut(s)	5
NdeII	GATC	1 cut(s)	309
NlaIII	CATG	4 cut(s)	9, 14, 112, 309
NspI	RCATGY	2 cut(s)	14, 112
PaeI	GCATGC	1 cut(s)	14
PciI	ACATGT	1 cut(s)	108
PctI	GAATGC	1 cut(s)	388
PfeI	GAWTC	1 cut(s)	80
PkrI	GCNGC	2 cut(s)	157, 438
PscI	ACATGT	1 cut(s)	108
Psp1406I	AACGTT	1 cut(s)	131
RsaI	GTAC	1 cut(s)	51
RsaNI	GTAC	1 cut(s)	50
SalI	GTCGAC	1 cut(s)	124
SaqAI	TTAA	1 cut(s)	60
SatI	GCNGC	2 cut(s)	156, 437
Sau3AI	GATC	1 cut(s)	309
SduI	GDGCHC	1 cut(s)	393
SetI	ASST	3 cut(s)	73, 134, 160
SfcI	CTRYAG	1 cut(s)	375
SphI	GCATGC	1 cut(s)	14
Sse9I	AATT	2 cut(s)	42, 443
StyI	CCWWGG	1 cut(s)	5
TaiI	ACGT	1 cut(s)	134
TaqI	TCGA	3 cut(s)	90, 125, 202
TasI	AATT	2 cut(s)	42, 443
TfiI	GAWTC	1 cut(s)	80
Tru1I	TTAA	1 cut(s)	60
Tru9I	TTAA	1 cut(s)	60
TscAI	CASTG	2 cut(s)	190, 393
TseI	GCWGC	2 cut(s)	155, 436
TspGWI	ACGGA	1 cut(s)	446
TspRI	CASTG	2 cut(s)	190, 393
XceI	RCATGY	2 cut(s)	14, 112
XcmI	CCANNNNNNNNNTGG	1 cut(s)	108
XmiI	GTMKAC	2 cut(s)	125, 138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.