Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000574

Physical Location & Seq

Genomic Coordinates Reverse (-)

52680904 .. 52681547

Gene Structure 644 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029984

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGCCTATCTCAACCGTCCGCCCATGCATGCCAATTTATGTCCTGTACTTTAACATTACCAATCCGCAGTTCAACTTTGCACAACCACCGTCGGCTCCTCCAATTCCGGCTTCTGTGCATGACATGTTCGGCTTCGCTATCCCTACACTGCTGACATTCGTTCAGATAAAATACCCTGCAGAATATCTATTCGAAACGCACCCCGTGACCGTCGCCGGTGTCTTATGTAGCTTGTTTGCATATTGCTTGGCCTTCGCGGTCAGGCGTAGAAGACTTCTTGTTACATTTGCTCGTTGGTTTCACATGGCCATGCTGCTGTTCGGTTCAGCCTCAGTTGCTTCACTAGTGTCGCTTCTGCTTCCTCACTCGTCCTGGCTGTCGCTGCCTGTTGTGATGTGTGTATTGTGCATCTTTTCTTTGGCGGGAGGCGAGCTGGGATTGACGCGAAGTCTGAGACAATGGATAAACCAACGACAAACTGAACCTCGTAGCTTCCTACGGGTTCTATGTATTCTGAACCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

175

Amino Acids

19.6

Weight (kDa)

9.49

Isoelectric Point (pI)

59.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000574)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13031 FvH4_3g38201 FvH4_7g11471 FvH4_7g15661
malus_domestica	MD02G1210800.v1.1 MD07G1115400.v1.1
prunus_persica	Prupe.2G076600_v2.0.a1 Prupe.2G137400_v2.0.a1 Prupe.2G142700_v2.0.a1 Prupe.2G143000_v2.0.a1 Prupe.2G143100_v2.0.a1 Prupe.2G179900_v2.0.a1 Prupe.2G180000_v2.0.a1 Prupe.2G180100_v2.0.a1 Prupe.2G180200_v2.0.a1 Prupe.2G180300_v2.0.a1
pyrus_communis	pycom07g10060
rosa_laevigata	RLG00000000617 RLG00000002126 RLG00000002129 RLG00000002130 RLG00000014963 RLG00000014966 RLG00000017055 RLG00000017058 RLG00000017061 RLG00000028520 RLG00000028521 RLG00000029984 RLG00000035987 RLG00000035999 RLG00000036002
rosa_roxburghii	Rroxscaffold_1G00012110 Rroxscaffold_1G00012170 Rroxscaffold_3G00219560 Rroxscaffold_4G00298060 Rroxscaffold_4G00298110 Rroxscaffold_4G00298120 Rroxscaffold_4G00305310 Rroxscaffold_7G00211490
rosa_rugosa	Rorug01G0206500 Rorug01G0261300 Rorug01G0261400 Rorug05G0392600 Rorug07G0339600 Rorug07G0339700
rosa_samantha	Rh1AG223300 Rh1AG223400 Rh1AG275200 Rh1AG275300 Rh1BG189500 Rh1BG189600 Rh1BG190900 Rh1BG242100 Rh1CG258200 Rh1CG258500 Rh1CG258600 Rh1DG218300 Rh1DG218400 Rh1DG270900 Rh1DG271000 Rh2AG144400 Rh2AG144600 Rh2AG145000 Rh2BG149400 Rh2BG149700 Rh2BG150000 Rh2BG150100 Rh2BG150300 Rh2CG150700 Rh2CG150900 Rh2DG149900 Rh2DG150100 Rh2DG150400 Rh5DG481400 Rh6AG063300 Rh6BG056400 Rh6BG056600 Rh6BG057000 Rh6CG056500 Rh7AG494100 Rh7AG494200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	257, 445
AciI	CCGC	4 cut(s)	19, 65, 257, 422
AcoI	YGGCCR	1 cut(s)	306
AdeI	CACNNNGTG	1 cut(s)	205
AfaI	GTAC	1 cut(s)	47
AflIII	ACRYGT	1 cut(s)	123
AgsI	TTSAA	1 cut(s)	73
AhdI	GACNNNNNGTC	1 cut(s)	447
AhlI	ACTAGT	1 cut(s)	343
AjnI	CCWGG	1 cut(s)	371
AjuI	GAANNNNNNNTTGG	4 cut(s)	53, 85, 94, 126
AluBI	AGCT	3 cut(s)	231, 433, 492
AluI	AGCT	3 cut(s)	231, 433, 492
Alw26I	GTCTC	1 cut(s)	448
AoxI	GGCC	2 cut(s)	249, 306
ApeKI	GCWGC	2 cut(s)	313, 382
AsuII	TTCGAA	1 cut(s)	192
BalI	TGGCCA	1 cut(s)	308
BbsI	GAAGAC	1 cut(s)	277
BbvI	GCAGC	2 cut(s)	300, 369
BciT130I	CCWGG	1 cut(s)	373
BcoDI	GTCTC	1 cut(s)	448
BcuI	ACTAGT	1 cut(s)	343
BfaI	CTAG	1 cut(s)	344
BfmI	CTRYAG	1 cut(s)	177
BisI	GCNGC	2 cut(s)	314, 383
BlsI	GCNGC	2 cut(s)	315, 384
Bme1390I	CCNGG	1 cut(s)	373
BmeRI	GACNNNNNGTC	1 cut(s)	447
BmiI	GGNNCC	1 cut(s)	96
BmrFI	CCNGG	1 cut(s)	373
BmsI	GCATC	1 cut(s)	417
BpiI	GAAGAC	1 cut(s)	277
Bpu14I	TTCGAA	1 cut(s)	192
Bse118I	RCCGGY	1 cut(s)	215
BseBI	CCWGG	1 cut(s)	373
BseMII	CTCAG	2 cut(s)	345, 443
BseRI	GAGGAG	1 cut(s)	87
BseXI	GCAGC	2 cut(s)	300, 369
BseYI	CCCAGC	1 cut(s)	433
Bsh1236I	CGCG	2 cut(s)	257, 445
BshFI	GGCC	2 cut(s)	251, 308
BsiSI	CCGG	2 cut(s)	107, 216
BsmAI	GTCTC	1 cut(s)	448
BsnI	GGCC	2 cut(s)	251, 308
Bsp119I	TTCGAA	1 cut(s)	192
BspACI	CCGC	4 cut(s)	19, 65, 257, 422
BspANI	GGCC	2 cut(s)	251, 308
BspCNI	CTCAG	2 cut(s)	344, 444
BspFNI	CGCG	2 cut(s)	257, 445
BspLI	GGNNCC	1 cut(s)	96
BspMAI	CTGCAG	1 cut(s)	181
BspT104I	TTCGAA	1 cut(s)	192
BsrFI	RCCGGY	1 cut(s)	215
BssAI	RCCGGY	1 cut(s)	215
Bst2UI	CCWGG	1 cut(s)	373
Bst4CI	ACNGT	3 cut(s)	16, 90, 211
BstBI	TTCGAA	1 cut(s)	192
BstC8I	GCNNGC	2 cut(s)	29, 431
BstDEI	CTNAG	2 cut(s)	331, 452
BstFNI	CGCG	2 cut(s)	257, 445
BstMAI	GTCTC	1 cut(s)	448
BstMWI	GCNNNNNNNGC	2 cut(s)	335, 382
BstNI	CCWGG	1 cut(s)	373
BstNSI	RCATGY	2 cut(s)	31, 127
BstSCI	CCNGG	1 cut(s)	371
BstSFI	CTRYAG	1 cut(s)	177
BstUI	CGCG	2 cut(s)	257, 445
BstV1I	GCAGC	2 cut(s)	300, 369
BstV2I	GAAGAC	1 cut(s)	277
BsuRI	GGCC	2 cut(s)	251, 308
BtsI	GCAGTG	1 cut(s)	146
BtsIMutI	CAGTG	1 cut(s)	146
Cac8I	GCNNGC	2 cut(s)	29, 431
Cfr10I	RCCGGY	1 cut(s)	215
CseI	GACGC	1 cut(s)	451
Csp6I	GTAC	1 cut(s)	46
CviAII	CATG	6 cut(s)	24, 28, 119, 124, 304, 310
CviQI	GTAC	1 cut(s)	46
DdeI	CTNAG	2 cut(s)	331, 452
DraIII	CACNNNGTG	1 cut(s)	205
DriI	GACNNNNNGTC	1 cut(s)	447
EaeI	YGGCCR	1 cut(s)	306
Eam1105I	GACNNNNNGTC	1 cut(s)	447
EciI	GGCGGA	1 cut(s)	8
EcoRII	CCWGG	1 cut(s)	371
EcoT22I	ATGCAT	1 cut(s)	29
FaeI	CATG	6 cut(s)	27, 31, 122, 127, 307, 313
FatI	CATG	6 cut(s)	23, 27, 118, 123, 303, 309
FauI	CCCGC	1 cut(s)	415
Fnu4HI	GCNGC	2 cut(s)	314, 383
Fsp4HI	GCNGC	2 cut(s)	314, 383
FspBI	CTAG	1 cut(s)	344
GluI	GCNGC	2 cut(s)	314, 383
GsaI	CCCAGC	1 cut(s)	437
HaeIII	GGCC	2 cut(s)	251, 308
HapII	CCGG	2 cut(s)	107, 216
HgaI	GACGC	1 cut(s)	451
Hin1II	CATG	6 cut(s)	27, 31, 122, 127, 307, 313
HpaII	CCGG	2 cut(s)	107, 216
Hpy188I	TCNGA	4 cut(s)	165, 453, 516, 524
Hpy99I	CGWCG	2 cut(s)	94, 215
HpyAV	CCTTC	1 cut(s)	262
HpyCH4III	ACNGT	3 cut(s)	16, 90, 211
HpyCH4V	TGCA	6 cut(s)	27, 80, 118, 179, 239, 408
HpyF10VI	GCNNNNNNNGC	2 cut(s)	335, 382
HpyF3I	CTNAG	2 cut(s)	331, 452
Hsp92II	CATG	6 cut(s)	27, 31, 122, 127, 307, 313
LmnI	GCTCC	1 cut(s)	100
LpnPI	CCDG	9 cut(s)	56, 120, 189, 229, 247, 358, 385, 399, 419
Lsp1109I	GCAGC	2 cut(s)	300, 369
LweI	GCATC	1 cut(s)	417
MaeI	CTAG	1 cut(s)	344
MaeIII	GTNAC	2 cut(s)	205, 280
MboII	GAAGA	1 cut(s)	282
MlsI	TGGCCA	1 cut(s)	308
MluCI	AATT	2 cut(s)	33, 102
MluNI	TGGCCA	1 cut(s)	308
MnlI	CCTC	5 cut(s)	108, 340, 372, 419, 495
Mox20I	TGGCCA	1 cut(s)	308
Mph1103I	ATGCAT	1 cut(s)	29
MscI	TGGCCA	1 cut(s)	308
MseI	TTAA	1 cut(s)	51
MslI	CAYNNNNRTG	1 cut(s)	308
Msp20I	TGGCCA	1 cut(s)	308
MspI	CCGG	2 cut(s)	107, 216
MspR9I	CCNGG	1 cut(s)	373
MvaI	CCWGG	1 cut(s)	373
MvnI	CGCG	2 cut(s)	257, 445
MwoI	GCNNNNNNNGC	2 cut(s)	335, 382
NlaIII	CATG	6 cut(s)	27, 31, 122, 127, 307, 313
NlaIV	GGNNCC	1 cut(s)	96
NmuCI	GTSAC	1 cut(s)	205
NsiI	ATGCAT	1 cut(s)	29
NspI	RCATGY	2 cut(s)	31, 127
NspV	TTCGAA	1 cut(s)	192
PaeI	GCATGC	1 cut(s)	31
PciI	ACATGT	1 cut(s)	123
PkrI	GCNGC	2 cut(s)	315, 384
PscI	ACATGT	1 cut(s)	123
Psp6I	CCWGG	1 cut(s)	371
PspFI	CCCAGC	1 cut(s)	433
PspGI	CCWGG	1 cut(s)	371
PspN4I	GGNNCC	1 cut(s)	96
PstI	CTGCAG	1 cut(s)	181
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
RseI	CAYNNNNRTG	1 cut(s)	308
SaqAI	TTAA	1 cut(s)	51
SatI	GCNGC	2 cut(s)	314, 383
ScrFI	CCNGG	1 cut(s)	373
SetI	ASST	5 cut(s)	233, 435, 487, 494, 522
SfaNI	GCATC	1 cut(s)	417
SfcI	CTRYAG	1 cut(s)	177
SfuI	TTCGAA	1 cut(s)	192
SgrAI	CRCCGGYG	1 cut(s)	215
SmiMI	CAYNNNNRTG	1 cut(s)	308
SpeI	ACTAGT	1 cut(s)	343
SphI	GCATGC	1 cut(s)	31
Sse9I	AATT	2 cut(s)	33, 102
SsiI	CCGC	4 cut(s)	19, 65, 257, 422
SspMI	CTAG	1 cut(s)	344
StyD4I	CCNGG	1 cut(s)	371
TaaI	ACNGT	3 cut(s)	16, 90, 211
TaqI	TCGA	1 cut(s)	192
TasI	AATT	2 cut(s)	33, 102
TatI	WGTACW	1 cut(s)	45
Tru1I	TTAA	1 cut(s)	51
Tru9I	TTAA	1 cut(s)	51
TscAI	CASTG	1 cut(s)	153
TseFI	GTSAC	1 cut(s)	205
TseI	GCWGC	2 cut(s)	313, 382
Tsp45I	GTSAC	1 cut(s)	205
TspRI	CASTG	1 cut(s)	153
XceI	RCATGY	2 cut(s)	31, 127
XspI	CTAG	1 cut(s)	344
Zsp2I	ATGCAT	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.