Rh7AG494200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000574
Physical Location & Seq
Reverse (-)
69456373 .. 69456942
570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG494200.1

Sequence Viewer

Length: 570 bp
ATGGCCAGTTTATTCCGTCCACGTGAACGTGGTAATAATATCTTCCTCATCTTCAACTTTGAACAAGCGGCCTCTTCCACCTTCGCCATTTTCACTTTCATGGTGCCGACACTTCTCACCTTCATCCAGACACTTCTCACCTTCATCCCATTTGAAACCCACCCCTTCAAGTTCATGGTTGCCATTCTCAGCTTACTTGCTTTCTTTTGCTTTGCCATTGGAGCCACCCAAAACTTCTTCCCAAATCACGCTCCAAAACTTTTTATGGCTATCAAGTGTACGGCCTCGCTCTCGGTGGCTTTGCTTGTGTCGCTTTTGCTTCCACAGCCTTGGGACCAAGTGCCGTATGTGACCTACTTCTTGTATGCATGCCACTGTCTCGGCTTACTCAGAAATATTAATCTGGCTTATTACCACGACATTGCTTATGGATTTGTGCGTAGCTCACTCGCCCGTCTACAGCAGTTGATACAAACGCGCCGCCCACCGTTGCCGCTGACAGTCAGAGATATCTCCAACCACCCGATTGCCAACCGTCGATCAATCACTGAAGTCAGAACAGTCCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

189

Amino Acids

21.65

Weight (kDa)

9.8

Isoelectric Point (pI)

54.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 103
AccI GTMKAC 1 cut(s) 457
AccII CGCG 1 cut(s) 478
AciI CCGC 3 cut(s) 68, 481, 494
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 570
AcvI CACGTG 1 cut(s) 23
AfaI GTAC 1 cut(s) 280
AgsI TTSAA 4 cut(s) 55, 62, 155, 169
AluBI AGCT 2 cut(s) 192, 444
AluI AGCT 2 cut(s) 192, 444
Alw26I GTCTC 1 cut(s) 383
AoxI GGCC 3 cut(s) 3, 69, 282
AseI ATTAAT 1 cut(s) 399
AspLEI GCGC 1 cut(s) 480
AspS9I GGNCC 1 cut(s) 334
AsuHPI GGTGA 2 cut(s) 109, 130
AvaII GGWCC 1 cut(s) 334
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 103
BbrPI CACGTG 1 cut(s) 23
BceAI ACGGC 2 cut(s) 297, 328
BcoDI GTCTC 1 cut(s) 383
BfmI CTRYAG 1 cut(s) 458
BisI GCNGC 3 cut(s) 69, 481, 494
BlsI GCNGC 3 cut(s) 70, 482, 495
Bme18I GGWCC 1 cut(s) 334
BmgT120I GGNCC 1 cut(s) 334
BmiI GGNNCC 3 cut(s) 105, 223, 335
BsaAI YACGTR 1 cut(s) 23
BsaJI CCNNGG 1 cut(s) 329
Bse1I ACTGG 1 cut(s) 6
Bse3DI GCAATG 1 cut(s) 420
BseDI CCNNGG 1 cut(s) 329
BseGI GGATG 2 cut(s) 123, 144
BseMI GCAATG 1 cut(s) 420
BseMII CTCAG 2 cut(s) 202, 403
BseNI ACTGG 1 cut(s) 6
Bsh1236I CGCG 1 cut(s) 478
BshFI GGCC 3 cut(s) 5, 71, 284
BshNI GGYRCC 1 cut(s) 103
BslFI GGGAC 1 cut(s) 347
BsmAI GTCTC 1 cut(s) 383
BsmFI GGGAC 1 cut(s) 347
BsnI GGCC 3 cut(s) 5, 71, 284
Bsp143I GATC 1 cut(s) 539
BspACI CCGC 3 cut(s) 68, 481, 494
BspANI GGCC 3 cut(s) 5, 71, 284
BspCNI CTCAG 2 cut(s) 201, 402
BspFNI CGCG 1 cut(s) 478
BspLI GGNNCC 3 cut(s) 105, 223, 335
BspT107I GGYRCC 1 cut(s) 103
BsrDI GCAATG 1 cut(s) 420
BsrI ACTGG 1 cut(s) 6
BssECI CCNNGG 1 cut(s) 329
BssMI GATC 1 cut(s) 539
BssT1I CCWWGG 1 cut(s) 329
Bst4CI ACNGT 5 cut(s) 377, 489, 502, 536, 562
Bst6I CTCTTC 1 cut(s) 79
BstBAI YACGTR 1 cut(s) 23
BstC8I GCNNGC 1 cut(s) 370
BstDEI CTNAG 2 cut(s) 188, 389
BstF5I GGATG 2 cut(s) 123, 144
BstFNI CGCG 1 cut(s) 478
BstHHI GCGC 1 cut(s) 480
BstKTI GATC 1 cut(s) 542
BstMAI GTCTC 1 cut(s) 383
BstMBI GATC 1 cut(s) 539
BstMWI GCNNNNNNNGC 3 cut(s) 221, 310, 325
BstNSI RCATGY 1 cut(s) 372
BstSFI CTRYAG 1 cut(s) 458
BstUI CGCG 1 cut(s) 478
BstXI CCANNNNNNTGG 1 cut(s) 330
BsuRI GGCC 3 cut(s) 5, 71, 284
BtsCI GGATG 2 cut(s) 123, 144
BtsIMutI CAGTG 2 cut(s) 373, 546
Cac8I GCNNGC 1 cut(s) 370
CfoI GCGC 1 cut(s) 480
Cfr13I GGNCC 1 cut(s) 334
Csp6I GTAC 1 cut(s) 279
CviAII CATG 3 cut(s) 100, 175, 369
CviQI GTAC 1 cut(s) 279
DdeI CTNAG 2 cut(s) 188, 389
DpnI GATC 1 cut(s) 541
DpnII GATC 1 cut(s) 539
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 79
EarI CTCTTC 1 cut(s) 79
Eco130I CCWWGG 1 cut(s) 329
Eco32I GATATC 1 cut(s) 511
Eco47I GGWCC 1 cut(s) 334
Eco57I CTGAAG 1 cut(s) 570
Eco72I CACGTG 1 cut(s) 23
EcoRV GATATC 1 cut(s) 511
EcoT14I CCWWGG 1 cut(s) 329
EcoT22I ATGCAT 1 cut(s) 370
ErhI CCWWGG 1 cut(s) 329
FaeI CATG 3 cut(s) 103, 178, 372
FaiI YATR 7 cut(s) 101, 176, 266, 348, 366, 370, 429
FaqI GGGAC 1 cut(s) 347
FatI CATG 3 cut(s) 99, 174, 368
FblI GTMKAC 1 cut(s) 457
Fnu4HI GCNGC 3 cut(s) 69, 481, 494
FokI GGATG 2 cut(s) 110, 131
Fsp4HI GCNGC 3 cut(s) 69, 481, 494
GlaI GCGC 1 cut(s) 479
GluI GCNGC 3 cut(s) 69, 481, 494
HaeIII GGCC 3 cut(s) 5, 71, 284
HhaI GCGC 1 cut(s) 480
Hin1II CATG 3 cut(s) 103, 178, 372
Hin6I GCGC 1 cut(s) 478
HinP1I GCGC 1 cut(s) 478
HphI GGTGA 2 cut(s) 109, 130
Hpy166II GTNNAC 5 cut(s) 20, 26, 279, 458, 565
Hpy188I TCNGA 3 cut(s) 392, 506, 557
Hpy188III TCNNGA 1 cut(s) 127
Hpy8I GTNNAC 5 cut(s) 20, 26, 279, 458, 565
Hpy99I CGWCG 1 cut(s) 540
HpyAV CCTTC 4 cut(s) 91, 130, 151, 175
HpyCH4III ACNGT 5 cut(s) 377, 489, 502, 536, 562
HpyCH4IV ACGT 2 cut(s) 22, 28
HpyCH4V TGCA 1 cut(s) 368
HpyF10VI GCNNNNNNNGC 3 cut(s) 221, 310, 325
HpyF3I CTNAG 2 cut(s) 188, 389
HpySE526I ACGT 2 cut(s) 22, 28
Hsp92II CATG 3 cut(s) 103, 178, 372
HspAI GCGC 1 cut(s) 478
Kzo9I GATC 1 cut(s) 539
LmnI GCTCC 2 cut(s) 221, 256
LpnPI CCDG 3 cut(s) 19, 140, 389
MaeII ACGT 2 cut(s) 22, 28
MaeIII GTNAC 1 cut(s) 349
MalI GATC 1 cut(s) 541
MboI GATC 1 cut(s) 539
MboII GAAGA 4 cut(s) 34, 43, 66, 229
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 540
MnlI CCTC 3 cut(s) 56, 82, 295
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 370
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 399
MslI CAYNNNNRTG 1 cut(s) 98
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 496
MvnI CGCG 1 cut(s) 478
MwoI GCNNNNNNNGC 3 cut(s) 221, 310, 325
NdeII GATC 1 cut(s) 539
NlaIII CATG 3 cut(s) 103, 178, 372
NlaIV GGNNCC 3 cut(s) 105, 223, 335
NmeAIII GCCGAG 1 cut(s) 360
NmuCI GTSAC 1 cut(s) 349
NsiI ATGCAT 1 cut(s) 370
NspI RCATGY 1 cut(s) 372
PaeI GCATGC 1 cut(s) 372
PkrI GCNGC 3 cut(s) 70, 482, 495
PmaCI CACGTG 1 cut(s) 23
PmlI CACGTG 1 cut(s) 23
Ppu21I YACGTR 1 cut(s) 23
PshBI ATTAAT 1 cut(s) 399
PspCI CACGTG 1 cut(s) 23
PspN4I GGNNCC 3 cut(s) 105, 223, 335
PspPI GGNCC 1 cut(s) 334
RsaI GTAC 1 cut(s) 280
RsaNI GTAC 1 cut(s) 279
RseI CAYNNNNRTG 1 cut(s) 98
SaqAI TTAA 1 cut(s) 399
SatI GCNGC 3 cut(s) 69, 481, 494
Sau3AI GATC 1 cut(s) 539
Sau96I GGNCC 1 cut(s) 334
SetI ASST 8 cut(s) 25, 31, 83, 122, 143, 194, 356, 446
SfcI CTRYAG 1 cut(s) 458
SinI GGWCC 1 cut(s) 334
SmiMI CAYNNNNRTG 1 cut(s) 98
SphI GCATGC 1 cut(s) 372
SsiI CCGC 3 cut(s) 68, 481, 494
SspI AATATT 1 cut(s) 397
StyI CCWWGG 1 cut(s) 329
TaaI ACNGT 5 cut(s) 377, 489, 502, 536, 562
TaiI ACGT 2 cut(s) 25, 31
TaqI TCGA 1 cut(s) 538
TauI GCSGC 3 cut(s) 71, 483, 496
Tru1I TTAA 1 cut(s) 399
Tru9I TTAA 1 cut(s) 399
TscAI CASTG 2 cut(s) 380, 553
TseFI GTSAC 1 cut(s) 349
Tsp45I GTSAC 1 cut(s) 349
TspDTI ATGAA 4 cut(s) 88, 112, 133, 163
TspGWI ACGGA 1 cut(s) 5
TspRI CASTG 2 cut(s) 380, 553
VpaK11BI GGWCC 1 cut(s) 334
VspI ATTAAT 1 cut(s) 399
XceI RCATGY 1 cut(s) 372
XmiI GTMKAC 1 cut(s) 457
Zsp2I ATGCAT 1 cut(s) 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.