Rh1AG275300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000574
Physical Location & Seq
Reverse (-)
50337153 .. 50338138
986 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG275300.1

Sequence Viewer

Length: 672 bp
ATGGCCACTGATAATGATCATCATATTCGTCGCTTTCAATGGCAATCAGCAGTCTTGAATAATCAACATGGTCACGTGGTTGTCTACCTCAACATTGTAGTTCCAACTGAATCTGCTTCTTCATCTTCTTCTTCTACTACTGCTCCGCCCTCTCACAATCTTGCTTTCATCGTTCCGGTACTCTTAACTTTCGTTCAGATCAAGTTCCCAGGGATGAACATGTGGTCTTCGCTGTTCGAAACGCACCATACAACCGCCATGGCAGCCATTGCAAGCTTGCTTCTGTATTGGCTGGCGCTAGAGGCCATGCAGAGATTCCCCGCTTACACTGTCAACTTTCGAGTTGTGAGGATGTTTTCAGGTTTGATCTCAATTGCTTCACTGCTCGGGCTTCTGCTTCCCGACTCTTGGGAGCATGTACCATATTACATGTTGTTCATGTCATATTGGGTGAGCCGAGGGTTTGGGTTTCTCCGAATGATGTATGGATTGGTTTACCGACGAGTTGTGGAGGAACTTCTTCAAAAGTTATGGTTATTCATCCATTACCGTCAACGAGTCCCAAGAACTGGTGAGCTCTTGCCATTTACAGTTGTGGATACACATGATCGCACGTCGATCCGTGGGCTCTTGCCATTGACGGTCATGGATATGCATGATCGCATATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

223

Amino Acids

25.79

Weight (kDa)

9.34

Isoelectric Point (pI)

51.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 569
AccI GTMKAC 1 cut(s) 84
AciI CCGC 3 cut(s) 146, 255, 321
AclWI GGATC 1 cut(s) 613
AcoI YGGCCR 1 cut(s) 3
AcvI CACGTG 1 cut(s) 76
AfaI GTAC 2 cut(s) 180, 420
AfiI CCNNNNNNNGG 2 cut(s) 408, 569
AflIII ACRYGT 2 cut(s) 219, 429
AgsI TTSAA 3 cut(s) 38, 58, 524
AjiI CACGTC 1 cut(s) 615
AjnI CCWGG 1 cut(s) 208
AluBI AGCT 2 cut(s) 276, 577
AluI AGCT 2 cut(s) 276, 577
Alw21I GWGCWC 1 cut(s) 579
AlwI GGATC 1 cut(s) 613
Ama87I CYCGRG 1 cut(s) 386
AoxI GGCC 2 cut(s) 3, 303
ApeKI GCWGC 1 cut(s) 263
Asp700I GAANNNNTTC 1 cut(s) 519
AspLEI GCGC 1 cut(s) 298
AsuHPI GGTGA 2 cut(s) 463, 584
AsuII TTCGAA 1 cut(s) 237
AvaI CYCGRG 1 cut(s) 386
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 2 cut(s) 579, 630
BbrPI CACGTG 1 cut(s) 76
BbsI GAAGAC 1 cut(s) 219
Bbv12I GWGCWC 1 cut(s) 579
BbvI GCAGC 1 cut(s) 275
BciT130I CCWGG 1 cut(s) 210
BciVI GTATCC 1 cut(s) 592
BclI TGATCA 1 cut(s) 16
BfaI CTAG 1 cut(s) 299
BfoI RGCGCY 1 cut(s) 299
BfuI GTATCC 1 cut(s) 592
BisI GCNGC 1 cut(s) 264
BlsI GCNGC 1 cut(s) 265
Bme1390I CCNGG 1 cut(s) 210
BmeT110I CYCGRG 1 cut(s) 386
BmgBI CACGTC 1 cut(s) 615
BmrFI CCNGG 1 cut(s) 210
BpiI GAAGAC 1 cut(s) 219
Bpu14I TTCGAA 1 cut(s) 237
BsaAI YACGTR 1 cut(s) 76
BsaBI GATNNNNATC 1 cut(s) 15
BsaJI CCNNGG 5 cut(s) 208, 209, 258, 457, 622
BsaWI WCCGGW 1 cut(s) 175
BsaXI ACNNNNNCTCC 2 cut(s) 127, 157
Bsc4I CCNNNNNNNGG 2 cut(s) 408, 569
Bse1I ACTGG 1 cut(s) 574
Bse3DI GCAATG 1 cut(s) 267
Bse8I GATNNNNATC 1 cut(s) 15
BseBI CCWGG 1 cut(s) 210
BseDI CCNNGG 5 cut(s) 208, 209, 258, 457, 622
BseGI GGATG 3 cut(s) 219, 357, 540
BseJI GATNNNNATC 1 cut(s) 15
BseLI CCNNNNNNNGG 2 cut(s) 408, 569
BseMI GCAATG 1 cut(s) 267
BseNI ACTGG 1 cut(s) 574
BseXI GCAGC 1 cut(s) 275
BshFI GGCC 2 cut(s) 5, 305
BsiHKAI GWGCWC 1 cut(s) 579
BsiHKCI CYCGRG 1 cut(s) 386
BsiSI CCGG 1 cut(s) 176
BslFI GGGAC 1 cut(s) 545
BslI CCNNNNNNNGG 2 cut(s) 408, 569
BsmFI GGGAC 1 cut(s) 545
BsnI GGCC 2 cut(s) 5, 305
BsoBI CYCGRG 1 cut(s) 386
Bsp119I TTCGAA 1 cut(s) 237
Bsp1286I GDGCHC 2 cut(s) 579, 630
Bsp143I GATC 6 cut(s) 16, 198, 366, 607, 618, 658
Bsp19I CCATGG 1 cut(s) 258
BspACI CCGC 3 cut(s) 146, 255, 321
BspANI GGCC 2 cut(s) 5, 305
BspPI GGATC 1 cut(s) 613
BspT104I TTCGAA 1 cut(s) 237
BsrDI GCAATG 1 cut(s) 267
BsrI ACTGG 1 cut(s) 574
BssECI CCNNGG 5 cut(s) 208, 209, 258, 457, 622
BssMI GATC 6 cut(s) 16, 198, 366, 607, 618, 658
BssT1I CCWWGG 1 cut(s) 258
Bst2UI CCWGG 1 cut(s) 210
Bst4CI ACNGT 4 cut(s) 331, 551, 592, 643
BstAPI GCANNNNNTGC 1 cut(s) 269
BstBAI YACGTR 1 cut(s) 76
BstBI TTCGAA 1 cut(s) 237
BstC8I GCNNGC 3 cut(s) 274, 278, 294
BstDSI CCRYGG 2 cut(s) 258, 622
BstF5I GGATG 3 cut(s) 219, 357, 540
BstH2I RGCGCY 1 cut(s) 299
BstHHI GCGC 1 cut(s) 298
BstKTI GATC 6 cut(s) 19, 201, 369, 610, 621, 661
BstMBI GATC 6 cut(s) 16, 198, 366, 607, 618, 658
BstMWI GCNNNNNNNGC 3 cut(s) 263, 269, 302
BstNI CCWGG 1 cut(s) 210
BstNSI RCATGY 3 cut(s) 223, 419, 433
BstSCI CCNGG 1 cut(s) 208
BstV1I GCAGC 1 cut(s) 275
BstV2I GAAGAC 1 cut(s) 219
BsuI GTATCC 1 cut(s) 592
BsuRI GGCC 2 cut(s) 5, 305
BtgI CCRYGG 2 cut(s) 258, 622
BtrI CACGTC 1 cut(s) 615
BtsCI GGATG 3 cut(s) 219, 357, 540
BtsI GCAGTG 1 cut(s) 380
BtsIMutI CAGTG 3 cut(s) 6, 327, 380
Cac8I GCNNGC 3 cut(s) 274, 278, 294
CfoI GCGC 1 cut(s) 298
Csp6I GTAC 2 cut(s) 179, 419
CviJI RGCY 9 cut(s) 5, 266, 276, 292, 305, 391, 456, 577, 628
CviKI_1 RGCY 9 cut(s) 5, 266, 276, 292, 305, 391, 456, 577, 628
CviQI GTAC 2 cut(s) 179, 419
DpnI GATC 6 cut(s) 18, 200, 368, 609, 620, 660
DpnII GATC 6 cut(s) 16, 198, 366, 607, 618, 658
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 1 cut(s) 135
Ecl136II GAGCTC 1 cut(s) 577
Eco130I CCWWGG 1 cut(s) 258
Eco24I GRGCYC 2 cut(s) 579, 630
Eco53kI GAGCTC 1 cut(s) 577
Eco72I CACGTG 1 cut(s) 76
Eco88I CYCGRG 1 cut(s) 386
EcoICRI GAGCTC 1 cut(s) 577
EcoRII CCWGG 1 cut(s) 208
EcoT14I CCWWGG 1 cut(s) 258
EcoT22I ATGCAT 1 cut(s) 657
EcoT38I GRGCYC 2 cut(s) 579, 630
ErhI CCWWGG 1 cut(s) 258
FaqI GGGAC 1 cut(s) 545
FauI CCCGC 1 cut(s) 328
FbaI TGATCA 1 cut(s) 16
FblI GTMKAC 1 cut(s) 84
Fnu4HI GCNGC 1 cut(s) 264
FokI GGATG 3 cut(s) 226, 364, 527
FriOI GRGCYC 2 cut(s) 579, 630
Fsp4HI GCNGC 1 cut(s) 264
FspBI CTAG 1 cut(s) 299
GlaI GCGC 1 cut(s) 297
GluI GCNGC 1 cut(s) 264
HaeII RGCGCY 1 cut(s) 299
HaeIII GGCC 2 cut(s) 5, 305
HapII CCGG 1 cut(s) 176
HhaI GCGC 1 cut(s) 298
Hin6I GCGC 1 cut(s) 296
HinP1I GCGC 1 cut(s) 296
HincII GTYRAC 2 cut(s) 334, 554
HindII GTYRAC 2 cut(s) 334, 554
HindIII AAGCTT 1 cut(s) 274
HinfI GANTC 4 cut(s) 110, 315, 404, 558
HpaII CCGG 1 cut(s) 176
HphI GGTGA 2 cut(s) 463, 584
Hpy166II GTNNAC 4 cut(s) 85, 334, 496, 554
Hpy188I TCNGA 2 cut(s) 198, 476
Hpy188III TCNNGA 2 cut(s) 55, 401
Hpy8I GTNNAC 4 cut(s) 85, 334, 496, 554
Hpy99I CGWCG 3 cut(s) 33, 504, 619
HpyCH4III ACNGT 4 cut(s) 331, 551, 592, 643
HpyCH4IV ACGT 2 cut(s) 75, 614
HpyCH4V TGCA 3 cut(s) 272, 310, 655
HpyF10VI GCNNNNNNNGC 3 cut(s) 263, 269, 302
HpySE526I ACGT 2 cut(s) 75, 614
HspAI GCGC 1 cut(s) 296
Ksp22I TGATCA 1 cut(s) 16
Kzo9I GATC 6 cut(s) 16, 198, 366, 607, 618, 658
LmnI GCTCC 2 cut(s) 148, 412
LpnPI CCDG 6 cut(s) 189, 195, 222, 278, 345, 555
Lsp1109I GCAGC 1 cut(s) 275
MaeI CTAG 1 cut(s) 299
MaeII ACGT 2 cut(s) 75, 614
MaeIII GTNAC 1 cut(s) 71
MalI GATC 6 cut(s) 18, 200, 368, 609, 620, 660
MboI GATC 6 cut(s) 16, 198, 366, 607, 618, 658
MboII GAAGA 6 cut(s) 111, 117, 120, 123, 219, 512
MfeI CAATTG 1 cut(s) 372
MhlI GDGCHC 2 cut(s) 579, 630
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 372
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 398, 567
MmeI TCCRAC 1 cut(s) 128
MnlI CCTC 6 cut(s) 98, 160, 295, 342, 452, 505
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 657
MroXI GAANNNNTTC 1 cut(s) 519
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 185
MslI CAYNNNNRTG 1 cut(s) 650
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 176
MspR9I CCNGG 1 cut(s) 210
MunI CAATTG 1 cut(s) 372
MvaI CCWGG 1 cut(s) 210
MwoI GCNNNNNNNGC 3 cut(s) 263, 269, 302
NcoI CCATGG 1 cut(s) 258
NdeII GATC 6 cut(s) 16, 198, 366, 607, 618, 658
NmeAIII GCCGAG 1 cut(s) 482
NmuCI GTSAC 1 cut(s) 71
NsiI ATGCAT 1 cut(s) 657
NspI RCATGY 3 cut(s) 223, 419, 433
NspV TTCGAA 1 cut(s) 237
PasI CCCWGGG 1 cut(s) 209
PciI ACATGT 2 cut(s) 219, 429
PdmI GAANNNNTTC 1 cut(s) 519
PfeI GAWTC 2 cut(s) 110, 315
PflMI CCANNNNNTGG 1 cut(s) 569
PkrI GCNGC 1 cut(s) 265
PleI GAGTC 2 cut(s) 398, 566
PmaCI CACGTG 1 cut(s) 76
PmlI CACGTG 1 cut(s) 76
PpsI GAGTC 2 cut(s) 398, 566
Ppu21I YACGTR 1 cut(s) 76
PscI ACATGT 2 cut(s) 219, 429
Psp124BI GAGCTC 1 cut(s) 579
Psp6I CCWGG 1 cut(s) 208
PspCI CACGTG 1 cut(s) 76
PspGI CCWGG 1 cut(s) 208
RsaI GTAC 2 cut(s) 180, 420
RsaNI GTAC 2 cut(s) 179, 419
RseI CAYNNNNRTG 1 cut(s) 650
SacI GAGCTC 1 cut(s) 579
SaqAI TTAA 1 cut(s) 185
SatI GCNGC 1 cut(s) 264
Sau3AI GATC 6 cut(s) 16, 198, 366, 607, 618, 658
SchI GAGTC 2 cut(s) 398, 567
ScrFI CCNGG 1 cut(s) 210
SduI GDGCHC 2 cut(s) 579, 630
SetI ASST 6 cut(s) 78, 90, 278, 364, 579, 617
SfuI TTCGAA 1 cut(s) 237
SmiMI CAYNNNNRTG 1 cut(s) 650
Sse9I AATT 1 cut(s) 372
SsiI CCGC 3 cut(s) 146, 255, 321
SspMI CTAG 1 cut(s) 299
SstI GAGCTC 1 cut(s) 579
StyD4I CCNGG 1 cut(s) 208
StyI CCWWGG 1 cut(s) 258
TaaI ACNGT 4 cut(s) 331, 551, 592, 643
TaiI ACGT 2 cut(s) 78, 617
TaqI TCGA 3 cut(s) 237, 340, 617
TasI AATT 1 cut(s) 372
TfiI GAWTC 2 cut(s) 110, 315
Tru1I TTAA 1 cut(s) 185
Tru9I TTAA 1 cut(s) 185
TscAI CASTG 3 cut(s) 13, 334, 387
TseFI GTSAC 1 cut(s) 71
TseI GCWGC 1 cut(s) 263
Tsp45I GTSAC 1 cut(s) 71
TspDTI ATGAA 5 cut(s) 111, 157, 230, 427, 529
TspGWI ACGGA 1 cut(s) 611
TspRI CASTG 3 cut(s) 13, 334, 387
Van91I CCANNNNNTGG 1 cut(s) 569
XceI RCATGY 3 cut(s) 223, 419, 433
XmiI GTMKAC 1 cut(s) 84
XmnI GAANNNNTTC 1 cut(s) 519
XspI CTAG 1 cut(s) 299
Zsp2I ATGCAT 1 cut(s) 657
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.