Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0000574

Physical Location & Seq

Genomic Coordinates Reverse (-)

19918995 .. 19919752

Gene Structure 758 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G142700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGATCAATCCTGATCATGACAGTTGTAATGTCACCTACTTCATCAACAATCAGCCCCACTACTTAATGAACTATTCAGTTGTGCAGCAAATAATGCCTGCTGCTACGAATTACAATCCTCATGCTCATGACATTTTTGCCTTCGTGATTCAAACACTCCTAACGTTGGTCCAGATGAGATATCCAGCCCAAGTTCTGTTTCAAACACACCCTACGGCCATCACAGTTTTCATCTCTAGTTTACTTGCATATTGCTTCGCCTTCAGGTTTGGCGGTCATGCATATAAATGGTGTCGCATGGCCATGCTTGTGTTTGGTTCACTCTCGGTTGCCACACTCTTGTGGCTTCTCTTTTTTACACACTACAACTCCTACCTCATTTTGTGCGTCTTGTTTTTGCCGGTGGCGGGGCTAGGCTTGGACCGCTTGGTTCGTAAACTGTGGCAGCGCATCCGCCAAGAATTACGCCCGCTTTTGCCAGTGACCTCAGTGAATATGTTACACAGACCAACTCGTTTCTCAAGTGTTATTGTTTCTCACATAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

183

Amino Acids

21.08

Weight (kDa)

9.39

Isoelectric Point (pI)

40.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000574)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13031 FvH4_3g38201 FvH4_7g11471 FvH4_7g15661
malus_domestica	MD02G1210800.v1.1 MD07G1115400.v1.1
prunus_persica	Prupe.2G076600_v2.0.a1 Prupe.2G137400_v2.0.a1 Prupe.2G142700_v2.0.a1 Prupe.2G143000_v2.0.a1 Prupe.2G143100_v2.0.a1 Prupe.2G179900_v2.0.a1 Prupe.2G180000_v2.0.a1 Prupe.2G180100_v2.0.a1 Prupe.2G180200_v2.0.a1 Prupe.2G180300_v2.0.a1
pyrus_communis	pycom07g10060
rosa_laevigata	RLG00000000617 RLG00000002126 RLG00000002129 RLG00000002130 RLG00000014963 RLG00000014966 RLG00000017055 RLG00000017058 RLG00000017061 RLG00000028520 RLG00000028521 RLG00000029984 RLG00000035987 RLG00000035999 RLG00000036002
rosa_roxburghii	Rroxscaffold_1G00012110 Rroxscaffold_1G00012170 Rroxscaffold_3G00219560 Rroxscaffold_4G00298060 Rroxscaffold_4G00298110 Rroxscaffold_4G00298120 Rroxscaffold_4G00305310 Rroxscaffold_7G00211490
rosa_rugosa	Rorug01G0206500 Rorug01G0261300 Rorug01G0261400 Rorug05G0392600 Rorug07G0339600 Rorug07G0339700
rosa_samantha	Rh1AG223300 Rh1AG223400 Rh1AG275200 Rh1AG275300 Rh1BG189500 Rh1BG189600 Rh1BG190900 Rh1BG242100 Rh1CG258200 Rh1CG258500 Rh1CG258600 Rh1DG218300 Rh1DG218400 Rh1DG270900 Rh1DG271000 Rh2AG144400 Rh2AG144600 Rh2AG145000 Rh2BG149400 Rh2BG149700 Rh2BG150000 Rh2BG150100 Rh2BG150300 Rh2CG150700 Rh2CG150900 Rh2DG149900 Rh2DG150100 Rh2DG150400 Rh5DG481400 Rh6AG063300 Rh6BG056400 Rh6BG056600 Rh6BG057000 Rh6CG056500 Rh7AG494100 Rh7AG494200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	273, 407, 424, 454, 470
AclI	AACGTT	1 cut(s)	164
AcoI	YGGCCR	2 cut(s)	216, 300
AcuI	CTGAAG	1 cut(s)	247
AfiI	CCNNNNNNNGG	2 cut(s)	166, 407
AgsI	TTSAA	2 cut(s)	152, 203
AjuI	GAANNNNNNNTTGG	2 cut(s)	183, 215
AleI	CACNNNNGTG	1 cut(s)	340
AoxI	GGCC	2 cut(s)	216, 300
ApeKI	GCWGC	3 cut(s)	85, 101, 445
AspLEI	GCGC	1 cut(s)	450
AspS9I	GGNCC	2 cut(s)	169, 421
AsuHPI	GGTGA	1 cut(s)	25
AvaII	GGWCC	2 cut(s)	169, 421
BalI	TGGCCA	1 cut(s)	302
BbvI	GCAGC	3 cut(s)	88, 97, 457
BccI	CCATC	1 cut(s)	227
BceAI	ACGGC	1 cut(s)	231
BclI	TGATCA	2 cut(s)	3, 13
BfaI	CTAG	2 cut(s)	237, 413
BisI	GCNGC	3 cut(s)	86, 102, 446
BlsI	GCNGC	3 cut(s)	87, 103, 447
Bme18I	GGWCC	2 cut(s)	169, 421
BmgT120I	GGNCC	2 cut(s)	169, 421
BmsI	GCATC	1 cut(s)	459
BpuEI	CTTGAG	1 cut(s)	505
BsaXI	ACNNNNNCTCC	2 cut(s)	353, 383
Bsc4I	CCNNNNNNNGG	2 cut(s)	166, 407
Bse118I	RCCGGY	1 cut(s)	400
Bse1I	ACTGG	1 cut(s)	479
BseGI	GGATG	1 cut(s)	450
BseLI	CCNNNNNNNGG	2 cut(s)	166, 407
BseMII	CTCAG	1 cut(s)	501
BseNI	ACTGG	1 cut(s)	479
BseXI	GCAGC	3 cut(s)	88, 97, 457
BsgI	GTGCAG	1 cut(s)	104
BshFI	GGCC	2 cut(s)	218, 302
BsiSI	CCGG	1 cut(s)	401
BslI	CCNNNNNNNGG	2 cut(s)	166, 407
BsnI	GGCC	2 cut(s)	218, 302
Bsp143I	GATC	2 cut(s)	3, 13
BspACI	CCGC	5 cut(s)	273, 407, 424, 454, 470
BspANI	GGCC	2 cut(s)	218, 302
BspCNI	CTCAG	1 cut(s)	500
BspHI	TCATGA	2 cut(s)	16, 127
BsrFI	RCCGGY	1 cut(s)	400
BsrI	ACTGG	1 cut(s)	479
BssAI	RCCGGY	1 cut(s)	400
BssMI	GATC	2 cut(s)	3, 13
Bst4CI	ACNGT	3 cut(s)	23, 226, 441
BstAPI	GCANNNNNTGC	1 cut(s)	94
BstC8I	GCNNGC	2 cut(s)	99, 470
BstDEI	CTNAG	1 cut(s)	487
BstF5I	GGATG	1 cut(s)	450
BstHHI	GCGC	1 cut(s)	450
BstKTI	GATC	2 cut(s)	6, 16
BstMBI	GATC	2 cut(s)	3, 13
BstMWI	GCNNNNNNNGC	2 cut(s)	94, 423
BstV1I	GCAGC	3 cut(s)	88, 97, 457
BsuRI	GGCC	2 cut(s)	218, 302
BtsCI	GGATG	1 cut(s)	450
BtsIMutI	CAGTG	2 cut(s)	486, 495
Cac8I	GCNNGC	2 cut(s)	99, 470
CciI	TCATGA	2 cut(s)	16, 127
CfoI	GCGC	1 cut(s)	450
Cfr10I	RCCGGY	1 cut(s)	400
Cfr13I	GGNCC	2 cut(s)	169, 421
CseI	GACGC	1 cut(s)	376
CviAII	CATG	6 cut(s)	17, 122, 128, 278, 298, 304
CviJI	RGCY	7 cut(s)	55, 188, 218, 302, 346, 412, 417
CviKI_1	RGCY	7 cut(s)	55, 188, 218, 302, 346, 412, 417
DdeI	CTNAG	1 cut(s)	487
DpnI	GATC	2 cut(s)	5, 15
DpnII	GATC	2 cut(s)	3, 13
EaeI	YGGCCR	2 cut(s)	216, 300
EciI	GGCGGA	1 cut(s)	443
Eco32I	GATATC	1 cut(s)	182
Eco47I	GGWCC	2 cut(s)	169, 421
Eco57I	CTGAAG	1 cut(s)	247
EcoRV	GATATC	1 cut(s)	182
EcoT22I	ATGCAT	1 cut(s)	283
FaeI	CATG	6 cut(s)	20, 125, 131, 281, 301, 307
FatI	CATG	6 cut(s)	16, 121, 127, 277, 297, 303
FauI	CCCGC	2 cut(s)	400, 477
FbaI	TGATCA	2 cut(s)	3, 13
Fnu4HI	GCNGC	3 cut(s)	86, 102, 446
FokI	GGATG	1 cut(s)	437
Fsp4HI	GCNGC	3 cut(s)	86, 102, 446
FspBI	CTAG	2 cut(s)	237, 413
GlaI	GCGC	1 cut(s)	449
GluI	GCNGC	3 cut(s)	86, 102, 446
HaeIII	GGCC	2 cut(s)	218, 302
HapII	CCGG	1 cut(s)	401
HgaI	GACGC	1 cut(s)	376
HhaI	GCGC	1 cut(s)	450
Hin1II	CATG	6 cut(s)	20, 125, 131, 281, 301, 307
Hin6I	GCGC	1 cut(s)	448
HinP1I	GCGC	1 cut(s)	448
HinfI	GANTC	1 cut(s)	148
HpaII	CCGG	1 cut(s)	401
HphI	GGTGA	1 cut(s)	25
Hpy166II	GTNNAC	3 cut(s)	242, 320, 437
Hpy188III	TCNNGA	5 cut(s)	11, 17, 128, 145, 172
Hpy8I	GTNNAC	3 cut(s)	242, 320, 437
HpyAV	CCTTC	2 cut(s)	151, 271
HpyCH4III	ACNGT	3 cut(s)	23, 226, 441
HpyCH4IV	ACGT	1 cut(s)	164
HpyCH4V	TGCA	3 cut(s)	85, 248, 281
HpyF10VI	GCNNNNNNNGC	2 cut(s)	94, 423
HpyF3I	CTNAG	1 cut(s)	487
HpySE526I	ACGT	1 cut(s)	164
Hsp92II	CATG	6 cut(s)	20, 125, 131, 281, 301, 307
HspAI	GCGC	1 cut(s)	448
Ksp22I	TGATCA	2 cut(s)	3, 13
Kzo9I	GATC	2 cut(s)	3, 13
LpnPI	CCDG	7 cut(s)	24, 111, 185, 198, 250, 414, 492
Lsp1109I	GCAGC	3 cut(s)	88, 97, 457
LweI	GCATC	1 cut(s)	459
MaeI	CTAG	2 cut(s)	237, 413
MaeII	ACGT	1 cut(s)	164
MaeIII	GTNAC	3 cut(s)	31, 481, 498
MalI	GATC	2 cut(s)	5, 15
MboI	GATC	2 cut(s)	3, 13
MlsI	TGGCCA	1 cut(s)	302
MluCI	AATT	2 cut(s)	109, 461
MluNI	TGGCCA	1 cut(s)	302
MnlI	CCTC	3 cut(s)	129, 386, 496
Mox20I	TGGCCA	1 cut(s)	302
Mph1103I	ATGCAT	1 cut(s)	283
MscI	TGGCCA	1 cut(s)	302
MseI	TTAA	1 cut(s)	65
MslI	CAYNNNNRTG	5 cut(s)	126, 286, 302, 308, 340
Msp20I	TGGCCA	1 cut(s)	302
MspI	CCGG	1 cut(s)	401
MwoI	GCNNNNNNNGC	2 cut(s)	94, 423
NdeII	GATC	2 cut(s)	3, 13
NlaIII	CATG	6 cut(s)	20, 125, 131, 281, 301, 307
NmuCI	GTSAC	2 cut(s)	31, 481
NsiI	ATGCAT	1 cut(s)	283
OliI	CACNNNNGTG	1 cut(s)	340
PagI	TCATGA	2 cut(s)	16, 127
PfeI	GAWTC	1 cut(s)	148
PkrI	GCNGC	3 cut(s)	87, 103, 447
Psp1406I	AACGTT	1 cut(s)	164
PspPI	GGNCC	2 cut(s)	169, 421
RseI	CAYNNNNRTG	5 cut(s)	126, 286, 302, 308, 340
SaqAI	TTAA	1 cut(s)	65
SatI	GCNGC	3 cut(s)	86, 102, 446
Sau3AI	GATC	2 cut(s)	3, 13
Sau96I	GGNCC	2 cut(s)	169, 421
SetI	ASST	5 cut(s)	38, 167, 269, 378, 488
SfaNI	GCATC	1 cut(s)	459
SinI	GGWCC	2 cut(s)	169, 421
SmiMI	CAYNNNNRTG	5 cut(s)	126, 286, 302, 308, 340
SmlI	CTYRAG	1 cut(s)	520
SmoI	CTYRAG	1 cut(s)	520
Sse9I	AATT	2 cut(s)	109, 461
SsiI	CCGC	5 cut(s)	273, 407, 424, 454, 470
SspMI	CTAG	2 cut(s)	237, 413
TaaI	ACNGT	3 cut(s)	23, 226, 441
TaiI	ACGT	1 cut(s)	167
TasI	AATT	2 cut(s)	109, 461
TfiI	GAWTC	1 cut(s)	148
Tru1I	TTAA	1 cut(s)	65
Tru9I	TTAA	1 cut(s)	65
TscAI	CASTG	2 cut(s)	486, 495
TseFI	GTSAC	2 cut(s)	31, 481
TseI	GCWGC	3 cut(s)	85, 101, 445
Tsp45I	GTSAC	2 cut(s)	31, 481
TspDTI	ATGAA	3 cut(s)	31, 83, 220
TspRI	CASTG	2 cut(s)	486, 495
VpaK11BI	GGWCC	2 cut(s)	169, 421
XspI	CTAG	2 cut(s)	237, 413
Zsp2I	ATGCAT	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.