Rh2BG150100

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000574
Physical Location & Seq
Forward (+)
12853955 .. 12855125
1171 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG150100.1

Sequence Viewer

Length: 528 bp
ATGGCCGATTTTCAATATCAAGGGCCACTCTTACGACGTGAATTTTATAATATCGTCATCTTCAACGTTGTACAAGCGGCCCCTTCCACCTTCGCCATTTTCACTTTCATGGTGCCAACACTTCTCACCTTCATCCAGATCAAATTCCCGGCCGTCGAAACTCTATCTCTTCCATTTGAAACCCACCACACCAAGTTCATGGTTGCCATTCTCAGCTTACTTGCCTTCTGTTGCTTTGCCGTTGGAGCCACCCAAAACTTCTTCCCAAATCACGCTGCAAAACTTTCTACGGTCATCAAGTGTACGGCCTCGCTCTCCGTGGCTTCGCTTGTGTCTCTTTTGCTTCCCAAGCCTTGGGACCAAGTGCCGTACGTGACCTACTTCTTGTACTTTACATACCACTGTCTCGGCTTACTGAGAAATATTAATCTGGCTTATTACTACCACATTGCTTGTGGATATGTGCATAGCTCACGCGCCCGTCCACAGCAGTTGACACAAACGCGCCGCCTACCGTTGCCGGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

175

Amino Acids

19.94

Weight (kDa)

9.32

Isoelectric Point (pI)

52.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 48
AccB1I GGYRCC 1 cut(s) 112
AccB7I CCANNNNNTGG 1 cut(s) 354
AccII CGCG 2 cut(s) 477, 505
AciI CCGC 2 cut(s) 77, 508
AclI AACGTT 1 cut(s) 66
AcoI YGGCCR 2 cut(s) 3, 150
AcsI RAATTY 2 cut(s) 41, 143
AfaI GTAC 4 cut(s) 72, 304, 371, 389
AfiI CCNNNNNNNGG 1 cut(s) 354
AgsI TTSAA 3 cut(s) 14, 64, 179
AjiI CACGTC 1 cut(s) 38
AluBI AGCT 2 cut(s) 216, 471
AluI AGCT 2 cut(s) 216, 471
Alw26I GTCTC 2 cut(s) 339, 410
AoxI GGCC 5 cut(s) 3, 23, 78, 150, 306
ApeKI GCWGC 1 cut(s) 275
ApoI RAATTY 2 cut(s) 41, 143
AseI ATTAAT 1 cut(s) 426
AspLEI GCGC 2 cut(s) 479, 507
AspS9I GGNCC 3 cut(s) 23, 79, 358
AsuC2I CCSGG 1 cut(s) 149
AsuHPI GGTGA 1 cut(s) 118
AvaII GGWCC 1 cut(s) 358
BanI GGYRCC 1 cut(s) 112
BbvI GCAGC 1 cut(s) 262
BceAI ACGGC 4 cut(s) 137, 224, 321, 352
BcnI CCSGG 1 cut(s) 149
BcoDI GTCTC 2 cut(s) 339, 410
BisI GCNGC 3 cut(s) 78, 276, 508
BlsI GCNGC 3 cut(s) 79, 277, 509
Bme1390I CCNGG 1 cut(s) 149
Bme18I GGWCC 1 cut(s) 358
BmgBI CACGTC 1 cut(s) 38
BmgT120I GGNCC 3 cut(s) 23, 79, 358
BmiI GGNNCC 4 cut(s) 81, 114, 247, 359
BmrFI CCNGG 1 cut(s) 149
BpuMI CCSGG 1 cut(s) 149
BsaAI YACGTR 1 cut(s) 373
BsaJI CCNNGG 2 cut(s) 318, 353
Bsc4I CCNNNNNNNGG 1 cut(s) 354
Bse118I RCCGGY 1 cut(s) 520
Bse3DI GCAATG 1 cut(s) 447
BseDI CCNNGG 2 cut(s) 318, 353
BseGI GGATG 1 cut(s) 132
BseLI CCNNNNNNNGG 1 cut(s) 354
BseMI GCAATG 1 cut(s) 447
BseMII CTCAG 2 cut(s) 226, 407
BseX3I CGGCCG 1 cut(s) 150
BseXI GCAGC 1 cut(s) 262
Bsh1236I CGCG 2 cut(s) 477, 505
Bsh1285I CGRYCG 1 cut(s) 153
BshFI GGCC 5 cut(s) 5, 25, 80, 152, 308
BshNI GGYRCC 1 cut(s) 112
BsiEI CGRYCG 1 cut(s) 153
BsiSI CCGG 2 cut(s) 149, 521
BsiWI CGTACG 1 cut(s) 369
BslFI GGGAC 1 cut(s) 371
BslI CCNNNNNNNGG 1 cut(s) 354
BsmAI GTCTC 2 cut(s) 339, 410
BsmFI GGGAC 1 cut(s) 371
BsnI GGCC 5 cut(s) 5, 25, 80, 152, 308
Bsp1407I TGTACA 1 cut(s) 70
Bsp143I GATC 1 cut(s) 138
BspACI CCGC 2 cut(s) 77, 508
BspANI GGCC 5 cut(s) 5, 25, 80, 152, 308
BspCNI CTCAG 2 cut(s) 225, 408
BspFNI CGCG 2 cut(s) 477, 505
BspLI GGNNCC 4 cut(s) 81, 114, 247, 359
BspT107I GGYRCC 1 cut(s) 112
BsrDI GCAATG 1 cut(s) 447
BsrFI RCCGGY 1 cut(s) 520
BsrGI TGTACA 1 cut(s) 70
BssAI RCCGGY 1 cut(s) 520
BssECI CCNNGG 2 cut(s) 318, 353
BssMI GATC 1 cut(s) 138
BssT1I CCWWGG 1 cut(s) 353
Bst4CI ACNGT 3 cut(s) 292, 404, 516
Bst6I CTCTTC 1 cut(s) 174
BstAUI TGTACA 1 cut(s) 70
BstBAI YACGTR 1 cut(s) 373
BstDEI CTNAG 2 cut(s) 212, 416
BstDSI CCRYGG 1 cut(s) 318
BstF5I GGATG 1 cut(s) 132
BstFNI CGCG 2 cut(s) 477, 505
BstHHI GCGC 2 cut(s) 479, 507
BstKTI GATC 1 cut(s) 141
BstMAI GTCTC 2 cut(s) 339, 410
BstMBI GATC 1 cut(s) 138
BstMCI CGRYCG 1 cut(s) 153
BstMWI GCNNNNNNNGC 2 cut(s) 245, 349
BstSCI CCNGG 1 cut(s) 147
BstUI CGCG 2 cut(s) 477, 505
BstV1I GCAGC 1 cut(s) 262
BstXI CCANNNNNNTGG 1 cut(s) 199
BstZI CGGCCG 1 cut(s) 150
BsuRI GGCC 5 cut(s) 5, 25, 80, 152, 308
BtgI CCRYGG 1 cut(s) 318
BtrI CACGTC 1 cut(s) 38
BtsCI GGATG 1 cut(s) 132
BtsIMutI CAGTG 1 cut(s) 400
CfoI GCGC 2 cut(s) 479, 507
Cfr10I RCCGGY 1 cut(s) 520
Cfr13I GGNCC 3 cut(s) 23, 79, 358
Csp6I GTAC 4 cut(s) 71, 303, 370, 388
CspCI CAANNNNNGTGG 4 cut(s) 434, 469, 474, 509
CviAII CATG 2 cut(s) 109, 199
CviQI GTAC 4 cut(s) 71, 303, 370, 388
DdeI CTNAG 2 cut(s) 212, 416
DpnI GATC 1 cut(s) 140
DpnII GATC 1 cut(s) 138
EaeI YGGCCR 2 cut(s) 3, 150
EagI CGGCCG 1 cut(s) 150
Eam1104I CTCTTC 1 cut(s) 174
EarI CTCTTC 1 cut(s) 174
EclXI CGGCCG 1 cut(s) 150
Eco130I CCWWGG 1 cut(s) 353
Eco47I GGWCC 1 cut(s) 358
Eco52I CGGCCG 1 cut(s) 150
EcoT14I CCWWGG 1 cut(s) 353
ErhI CCWWGG 1 cut(s) 353
FaeI CATG 2 cut(s) 112, 202
FaiI YATR 6 cut(s) 48, 110, 200, 397, 462, 468
FaqI GGGAC 1 cut(s) 371
FatI CATG 2 cut(s) 108, 198
Fnu4HI GCNGC 3 cut(s) 78, 276, 508
FokI GGATG 1 cut(s) 119
Fsp4HI GCNGC 3 cut(s) 78, 276, 508
GlaI GCGC 2 cut(s) 478, 506
GluI GCNGC 3 cut(s) 78, 276, 508
HaeIII GGCC 5 cut(s) 5, 25, 80, 152, 308
HapII CCGG 2 cut(s) 149, 521
HhaI GCGC 2 cut(s) 479, 507
Hin1II CATG 2 cut(s) 112, 202
Hin6I GCGC 2 cut(s) 477, 505
HinP1I GCGC 2 cut(s) 477, 505
HincII GTYRAC 1 cut(s) 495
HindII GTYRAC 1 cut(s) 495
HpaII CCGG 2 cut(s) 149, 521
HphI GGTGA 1 cut(s) 118
Hpy166II GTNNAC 3 cut(s) 303, 485, 495
Hpy188III TCNNGA 1 cut(s) 136
Hpy8I GTNNAC 3 cut(s) 303, 485, 495
Hpy99I CGWCG 2 cut(s) 39, 158
HpyAV CCTTC 4 cut(s) 93, 100, 139, 235
HpyCH4III ACNGT 3 cut(s) 292, 404, 516
HpyCH4IV ACGT 3 cut(s) 37, 66, 372
HpyCH4V TGCA 2 cut(s) 278, 466
HpyF10VI GCNNNNNNNGC 2 cut(s) 245, 349
HpyF3I CTNAG 2 cut(s) 212, 416
HpySE526I ACGT 3 cut(s) 37, 66, 372
Hsp92II CATG 2 cut(s) 112, 202
HspAI GCGC 2 cut(s) 477, 505
Kzo9I GATC 1 cut(s) 138
LmnI GCTCC 1 cut(s) 245
LpnPI CCDG 3 cut(s) 149, 162, 416
Lsp1109I GCAGC 1 cut(s) 262
MaeII ACGT 3 cut(s) 37, 66, 372
MaeIII GTNAC 1 cut(s) 373
MalI GATC 1 cut(s) 140
MboI GATC 1 cut(s) 138
MboII GAAGA 3 cut(s) 52, 161, 253
MluCI AATT 2 cut(s) 41, 143
MmeI TCCRAC 1 cut(s) 223
MnlI CCTC 1 cut(s) 319
MseI TTAA 1 cut(s) 426
MslI CAYNNNNRTG 1 cut(s) 107
MspI CCGG 2 cut(s) 149, 521
MspR9I CCNGG 1 cut(s) 149
MvnI CGCG 2 cut(s) 477, 505
MwoI GCNNNNNNNGC 2 cut(s) 245, 349
NciI CCSGG 1 cut(s) 149
NdeII GATC 1 cut(s) 138
NlaIII CATG 2 cut(s) 112, 202
NlaIV GGNNCC 4 cut(s) 81, 114, 247, 359
NmeAIII GCCGAG 1 cut(s) 387
NmuCI GTSAC 1 cut(s) 373
Pfl23II CGTACG 1 cut(s) 369
PflMI CCANNNNNTGG 1 cut(s) 354
PkrI GCNGC 3 cut(s) 79, 277, 509
Ppu21I YACGTR 1 cut(s) 373
PshBI ATTAAT 1 cut(s) 426
PsiI TTATAA 1 cut(s) 48
Psp1406I AACGTT 1 cut(s) 66
PspLI CGTACG 1 cut(s) 369
PspN4I GGNNCC 4 cut(s) 81, 114, 247, 359
PspPI GGNCC 3 cut(s) 23, 79, 358
RsaI GTAC 4 cut(s) 72, 304, 371, 389
RsaNI GTAC 4 cut(s) 71, 303, 370, 388
RseI CAYNNNNRTG 1 cut(s) 107
SaqAI TTAA 1 cut(s) 426
SatI GCNGC 3 cut(s) 78, 276, 508
Sau3AI GATC 1 cut(s) 138
Sau96I GGNCC 3 cut(s) 23, 79, 358
ScrFI CCNGG 1 cut(s) 149
SetI ASST 8 cut(s) 40, 69, 92, 131, 218, 375, 380, 473
SinI GGWCC 1 cut(s) 358
SmiMI CAYNNNNRTG 1 cut(s) 107
Sse9I AATT 2 cut(s) 41, 143
SsiI CCGC 2 cut(s) 77, 508
SspI AATATT 1 cut(s) 424
StyD4I CCNGG 1 cut(s) 147
StyI CCWWGG 1 cut(s) 353
TaaI ACNGT 3 cut(s) 292, 404, 516
TaiI ACGT 3 cut(s) 40, 69, 375
TaqI TCGA 1 cut(s) 156
TasI AATT 2 cut(s) 41, 143
TatI WGTACW 2 cut(s) 70, 387
TauI GCSGC 2 cut(s) 80, 510
Tru1I TTAA 1 cut(s) 426
Tru9I TTAA 1 cut(s) 426
TscAI CASTG 1 cut(s) 407
TseFI GTSAC 1 cut(s) 373
TseI GCWGC 1 cut(s) 275
Tsp45I GTSAC 1 cut(s) 373
TspDTI ATGAA 3 cut(s) 97, 121, 187
TspGWI ACGGA 1 cut(s) 307
TspRI CASTG 1 cut(s) 407
Van91I CCANNNNNTGG 1 cut(s) 354
VpaK11BI GGWCC 1 cut(s) 358
VspI ATTAAT 1 cut(s) 426
XapI RAATTY 2 cut(s) 41, 143
XcmI CCANNNNNNNNNTGG 1 cut(s) 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.