RLG00000002126

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000574
Physical Location & Seq
Reverse (-)
25912446 .. 25913153
708 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002126

Sequence Viewer

Length: 507 bp
ATGAGTACAACAGGCGTTGTTGCTCCCTTTGTTTTAAATCCCACTCTGAATGTCATGTTGATCACCATCGAGGCCACACCCTCAGTTCGTCTCCATGACATTTTCTCCTTCATCATTCCAACCCTCCTCACATTAGTTCAAATGAGATACCCAGCAGAAGATCTGTTCCAAACTCACCCTGTAACCCTAAACATCCTCCTGTTTTGCTTGCTCGCTTATTGCTTCGCCTGTGGAGTTAGGCATAGGTTTCTCATCACCTACGCTCCTTGGTTTCCCATGGGCATGATGCTGTTCGGCTCCGTCTCTGTTGCTTCTCTCCTCTTGCTTTTGTTTCCACGCGCCTCCTGGCAGCCTGCATGTGCTGTGGGCTTTGATTATTGCGGGTCGGGTTCTGCTCGGGTTTGTCCTCAGATTATGGGATTGGTCCGGAGATTACTTCGTCACTTTCGCGCTCGACAGAGTCGCCTGAGGACGACAAGTCCTGTTTTGCCACTGACGTTGATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

169

Amino Acids

18.84

Weight (kDa)

9.85

Isoelectric Point (pI)

56.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 339, 450
AccIII TCCGGA 1 cut(s) 426
AciI CCGC 1 cut(s) 381
AfaI GTAC 1 cut(s) 7
AgsI TTSAA 1 cut(s) 140
AhdI GACNNNNNGTC 1 cut(s) 477
AjnI CCWGG 1 cut(s) 344
Alw26I GTCTC 2 cut(s) 95, 307
Ama87I CYCGRG 1 cut(s) 396
Aor13HI TCCGGA 1 cut(s) 426
AoxI GGCC 1 cut(s) 72
ApeKI GCWGC 1 cut(s) 349
AspLEI GCGC 2 cut(s) 341, 452
AspS9I GGNCC 1 cut(s) 424
AsuHPI GGTGA 3 cut(s) 55, 167, 247
AvaI CYCGRG 1 cut(s) 396
AvaII GGWCC 1 cut(s) 424
AxyI CCTNAGG 1 cut(s) 467
BbvI GCAGC 1 cut(s) 361
BccI CCATC 1 cut(s) 74
BciT130I CCWGG 1 cut(s) 346
BclI TGATCA 1 cut(s) 60
BcoDI GTCTC 2 cut(s) 95, 307
BglII AGATCT 1 cut(s) 160
BisI GCNGC 1 cut(s) 350
BlsI GCNGC 1 cut(s) 351
Bme1390I CCNGG 1 cut(s) 346
Bme18I GGWCC 1 cut(s) 424
BmeRI GACNNNNNGTC 1 cut(s) 477
BmeT110I CYCGRG 1 cut(s) 396
BmgT120I GGNCC 1 cut(s) 424
BmiI GGNNCC 1 cut(s) 298
BmrFI CCNGG 1 cut(s) 346
BmsI GCATC 1 cut(s) 276
BsaBI GATNNNNATC 1 cut(s) 65
BsaJI CCNNGG 2 cut(s) 266, 276
BsaWI WCCGGW 1 cut(s) 426
BsaXI ACNNNNNCTCC 4 cut(s) 89, 119, 247, 277
Bse21I CCTNAGG 1 cut(s) 467
Bse8I GATNNNNATC 1 cut(s) 65
BseAI TCCGGA 1 cut(s) 426
BseBI CCWGG 1 cut(s) 346
BseDI CCNNGG 2 cut(s) 266, 276
BseGI GGATG 1 cut(s) 192
BseJI GATNNNNATC 1 cut(s) 65
BseMII CTCAG 3 cut(s) 96, 422, 458
BseRI GAGGAG 2 cut(s) 116, 308
BseXI GCAGC 1 cut(s) 361
BseYI CCCAGC 1 cut(s) 151
Bsh1236I CGCG 2 cut(s) 339, 450
BshFI GGCC 1 cut(s) 74
BsiHKCI CYCGRG 1 cut(s) 396
BsiSI CCGG 1 cut(s) 427
BsmAI GTCTC 2 cut(s) 95, 307
BsmBI CGTCTC 2 cut(s) 95, 307
BsnI GGCC 1 cut(s) 74
BsoBI CYCGRG 1 cut(s) 396
Bsp13I TCCGGA 1 cut(s) 426
Bsp143I GATC 2 cut(s) 60, 160
Bsp19I CCATGG 1 cut(s) 276
BspACI CCGC 1 cut(s) 381
BspANI GGCC 1 cut(s) 74
BspCNI CTCAG 3 cut(s) 95, 421, 459
BspEI TCCGGA 1 cut(s) 426
BspFNI CGCG 2 cut(s) 339, 450
BspLI GGNNCC 1 cut(s) 298
BssECI CCNNGG 2 cut(s) 266, 276
BssMI GATC 2 cut(s) 60, 160
BssT1I CCWWGG 2 cut(s) 266, 276
Bst2UI CCWGG 1 cut(s) 346
BstC8I GCNNGC 3 cut(s) 209, 213, 354
BstDEI CTNAG 3 cut(s) 82, 408, 467
BstDSI CCRYGG 1 cut(s) 276
BstF5I GGATG 1 cut(s) 192
BstFNI CGCG 2 cut(s) 339, 450
BstHHI GCGC 2 cut(s) 341, 452
BstKTI GATC 2 cut(s) 63, 163
BstMAI GTCTC 2 cut(s) 95, 307
BstMBI GATC 2 cut(s) 60, 160
BstNI CCWGG 1 cut(s) 346
BstNSI RCATGY 1 cut(s) 360
BstSCI CCNGG 1 cut(s) 344
BstUI CGCG 2 cut(s) 339, 450
BstV1I GCAGC 1 cut(s) 361
BstX2I RGATCY 1 cut(s) 160
BstYI RGATCY 1 cut(s) 160
Bsu36I CCTNAGG 1 cut(s) 467
BsuRI GGCC 1 cut(s) 74
BtgI CCRYGG 1 cut(s) 276
BtsCI GGATG 1 cut(s) 192
BtsIMutI CAGTG 1 cut(s) 491
Cac8I GCNNGC 3 cut(s) 209, 213, 354
CfoI GCGC 2 cut(s) 341, 452
Cfr13I GGNCC 1 cut(s) 424
Csp6I GTAC 1 cut(s) 6
CspCI CAANNNNNGTGG 1 cut(s) 480
CviAII CATG 5 cut(s) 55, 95, 277, 283, 357
CviJI RGCY 4 cut(s) 74, 297, 352, 369
CviKI_1 RGCY 4 cut(s) 74, 297, 352, 369
CviQI GTAC 1 cut(s) 6
DdeI CTNAG 3 cut(s) 82, 408, 467
DpnI GATC 2 cut(s) 62, 162
DpnII GATC 2 cut(s) 60, 160
DraI TTTAAA 1 cut(s) 36
DriI GACNNNNNGTC 1 cut(s) 477
Eam1105I GACNNNNNGTC 1 cut(s) 477
Eco130I CCWWGG 2 cut(s) 266, 276
Eco47I GGWCC 1 cut(s) 424
Eco81I CCTNAGG 1 cut(s) 467
Eco88I CYCGRG 1 cut(s) 396
EcoRII CCWGG 1 cut(s) 344
EcoT14I CCWWGG 2 cut(s) 266, 276
ErhI CCWWGG 2 cut(s) 266, 276
Esp3I CGTCTC 2 cut(s) 95, 307
FaeI CATG 5 cut(s) 58, 98, 280, 286, 360
FaiI YATR 7 cut(s) 56, 96, 243, 278, 284, 358, 416
FatI CATG 5 cut(s) 54, 94, 276, 282, 356
FauI CCCGC 1 cut(s) 374
FbaI TGATCA 1 cut(s) 60
Fnu4HI GCNGC 1 cut(s) 350
FokI GGATG 1 cut(s) 179
Fsp4HI GCNGC 1 cut(s) 350
GlaI GCGC 2 cut(s) 340, 451
GluI GCNGC 1 cut(s) 350
GsaI CCCAGC 1 cut(s) 155
HaeIII GGCC 1 cut(s) 74
HapII CCGG 1 cut(s) 427
HhaI GCGC 2 cut(s) 341, 452
Hin1II CATG 5 cut(s) 58, 98, 280, 286, 360
Hin6I GCGC 2 cut(s) 339, 450
HinP1I GCGC 2 cut(s) 339, 450
HinfI GANTC 1 cut(s) 460
HpaII CCGG 1 cut(s) 427
HphI GGTGA 3 cut(s) 55, 167, 247
Hpy188I TCNGA 2 cut(s) 48, 411
Hpy188III TCNNGA 1 cut(s) 427
HpyAV CCTTC 1 cut(s) 118
HpyCH4IV ACGT 1 cut(s) 497
HpyCH4V TGCA 1 cut(s) 356
HpyF3I CTNAG 3 cut(s) 82, 408, 467
HpySE526I ACGT 1 cut(s) 497
Hsp92II CATG 5 cut(s) 58, 98, 280, 286, 360
HspAI GCGC 2 cut(s) 339, 450
Kpn2I TCCGGA 1 cut(s) 426
Ksp22I TGATCA 1 cut(s) 60
Kzo9I GATC 2 cut(s) 60, 160
LmnI GCTCC 3 cut(s) 28, 268, 302
Lsp1109I GCAGC 1 cut(s) 361
LweI GCATC 1 cut(s) 276
MaeII ACGT 1 cut(s) 497
MaeIII GTNAC 2 cut(s) 181, 440
MalI GATC 2 cut(s) 62, 162
MboI GATC 2 cut(s) 60, 160
MboII GAAGA 1 cut(s) 170
MflI RGATCY 1 cut(s) 160
MlyI GAGTC 1 cut(s) 469
MmeI TCCRAC 1 cut(s) 143
MnlI CCTC 9 cut(s) 64, 91, 134, 137, 206, 329, 352, 417, 462
MroI TCCGGA 1 cut(s) 426
MseI TTAA 1 cut(s) 35
MslI CAYNNNNRTG 1 cut(s) 281
MspI CCGG 1 cut(s) 427
MspR9I CCNGG 1 cut(s) 346
MvaI CCWGG 1 cut(s) 346
MvnI CGCG 2 cut(s) 339, 450
NcoI CCATGG 1 cut(s) 276
NdeII GATC 2 cut(s) 60, 160
NlaIII CATG 5 cut(s) 58, 98, 280, 286, 360
NlaIV GGNNCC 1 cut(s) 298
NmuCI GTSAC 1 cut(s) 440
NspI RCATGY 1 cut(s) 360
PflFI GACNNNGTC 1 cut(s) 459
PkrI GCNGC 1 cut(s) 351
PleI GAGTC 1 cut(s) 468
PpsI GAGTC 1 cut(s) 468
Psp6I CCWGG 1 cut(s) 344
PspFI CCCAGC 1 cut(s) 151
PspGI CCWGG 1 cut(s) 344
PspN4I GGNNCC 1 cut(s) 298
PspPI GGNCC 1 cut(s) 424
PsuI RGATCY 1 cut(s) 160
PsyI GACNNNGTC 1 cut(s) 459
RsaI GTAC 1 cut(s) 7
RsaNI GTAC 1 cut(s) 6
RseI CAYNNNNRTG 1 cut(s) 281
SaqAI TTAA 1 cut(s) 35
SatI GCNGC 1 cut(s) 350
Sau3AI GATC 2 cut(s) 60, 160
Sau96I GGNCC 1 cut(s) 424
SchI GAGTC 1 cut(s) 469
ScrFI CCNGG 1 cut(s) 346
SetI ASST 3 cut(s) 248, 260, 500
SfaNI GCATC 1 cut(s) 276
SinI GGWCC 1 cut(s) 424
SmiMI CAYNNNNRTG 1 cut(s) 281
SsiI CCGC 1 cut(s) 381
StyD4I CCNGG 1 cut(s) 344
StyI CCWWGG 2 cut(s) 266, 276
TaiI ACGT 1 cut(s) 500
TaqI TCGA 2 cut(s) 69, 454
TatI WGTACW 1 cut(s) 5
Tru1I TTAA 1 cut(s) 35
Tru9I TTAA 1 cut(s) 35
TscAI CASTG 1 cut(s) 498
TseFI GTSAC 1 cut(s) 440
TseI GCWGC 1 cut(s) 349
Tsp45I GTSAC 1 cut(s) 440
TspDTI ATGAA 1 cut(s) 100
TspGWI ACGGA 1 cut(s) 289
TspRI CASTG 1 cut(s) 498
Tth111I GACNNNGTC 1 cut(s) 459
VpaK11BI GGWCC 1 cut(s) 424
XceI RCATGY 1 cut(s) 360
XcmI CCANNNNNNNNNTGG 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.