Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001128

Physical Location & Seq

Genomic Coordinates Reverse (-)

5976947 .. 5979398

Gene Structure 2452 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g10990.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGTCAGTCTCTTCAGCTCTAAACCCCCAACTCTTCTCTCTCCTCCCAAACCCTTCTCTCTCCTCCAAACCCCACAAGCTCTCACCACCCACCTCTCTCAAATTCTCAACCAAACTCCACACCCTCTCCCCCTCCTTCAACTCTTCCTACTCCACCAAGCTTGAAGAAGAAGACCACGTCATCGGCGATTGCGTCGTCTTCGAAGAAGGCATATTCGACGACCCGTTTCTCCAAGAACCCGAACCCGAACGGTTCGACCCGGAAAAGCCCAAACCCAGAAAGCGGGTCGAGATTGAGACGGAGAATTTGGTGCCGGAGGGATGGAAGGAGGTGCAGGCGGAGGTGAACATAACGAAGAAGGAGAGGAGGAAGATTGCGCAGGAGATGCAGTTCGGAACGAGAGTGGCGAAGAACAAGAGGGGGTTGGAGCCGATAAGGGATTTGAATTTGGAGGAGTACAAGGCGTATAGGGAGGCCAAGTTGAACCAGCTGAAGCCGCTGGTTTTGGAGAGGCCGGAGAGGTTTAAGGAGGTGGAGGAGGGAGGGAGTGAGGAGGTTGTGAGTGTGAGAGTTGCGCCGAAGAATCCGAGGTGGGCGGTTTATGGGAAGGGGTTGGAGGATGTTACTGAGTTTTTTAACAGCGAGCATTATGAGCCTGGTGTCAAGAGAGCTGAAGGACCGCGGCCATTGTTTACGAAAGAGGAGAAGCTGATGATGAATAGGCGGAAACCCGATATGGCTGCTGCCACTTCTAGTAAATGGCTGCCCCTTCATACTCTTGCAGCATCAGGAGAATTTTACCTTATGGACGCTTTATTGAGACATGAAGCTGATATCAATGCTGTGGATAAGAATGATTGGACTGTTCTTCACAAAGCAATTATCGGTAAAAACCAGGCCATTACAAACTATCTTCTTAGAGAATCGGCTAATCCATTTGTTCGTGATAAGGATGGGGCCACCTTGATGCACTATGCTGTCCGAACAGCTTCAAGTCAAGCAATTAAGATTCTTTTGTTATACAATGTTGACATAAACCTTCAGGACAATGATGGGTGGACACCGTTACATCTAGCTGTTCAAGGCCGAAGAGTAGATGTAGTGAGGCTTTTGTTGATTAAAGGCGCGGATAAGACATTGAAAAACAAGGACGGATTAACCCCGCTTGAGCTTTGCCTCTATTCTGGCCGAGACACAAGGACTTACGAGCTAATAAAGGTGTTGAAGCTTCTTCCCAAAACTCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Ank_2 Ank_4 Ank_5 RRM_1

Protein Analysis

416

Amino Acids

47.35

Weight (kDa)

8.52

Isoelectric Point (pI)

45.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	257 - 349	7.1e-14	Ankyrin repeats (3 copies)
Ank_4	PF13637	257 - 306	1.1e-06	Ankyrin repeats (many copies)
Ank_5	PF13857	272 - 326	6.6e-06	Ankyrin repeats (many copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66055 AT5G66055
fragaria_vesca	FvH4_1g10990 FvH4_1g10990
malus_domestica	MD15G1236900.v1.1
prunus_persica	Prupe.7G175600_v2.0.a1
pyrus_communis	pycom15g21070
rosa_chinensis	RchiOBHm_Chr1g0316921 RchiOBHm_Chr1g0316981 RchiOBHm_Chr2g0098251 RchiOBHm_Chr2g0145411 RchiOBHm_Chr4g0390291 RchiOBHm_Chr5g0073551
rosa_laevigata	RLG00000001656 RLG00000016779 RLG00000027817 RLG00000030637 RLG00000032089
rosa_multiflora	Rmu_co8173478.1_g000001 Rmu_sc0000104.1_g000031 Rmu_sc0000712.1_g000024 Rmu_sc0001298.1_g000058 Rmu_sc0002048.1_g000015 Rmu_sc0002398.1_g000019 Rmu_sc0004138.1_g000005 Rmu_sc0007472.1_g000006 Rmu_sc0009922.1_g000006
rosa_roxburghii	Rroxscaffold_2G00094620 Rroxscaffold_2G00144120
rosa_rugosa	Rorug02G0071600 Rorug02G0547800 Rorug04G0008500 Rorug04G0008600 Rorug04G0008600 Rorug04G0208000 Rorug05G0455100.1
rosa_samantha	Rh1AG024600 Rh1AG024700 Rh1CG022000 Rh1CG022900 Rh1DG021700 Rh2AG118600 Rh2BG121700 Rh2BG300700 Rh2BG456300 Rh2CG123300 Rh2CG279400 Rh2DG123300 Rh2DG466200 Rh4AG245100 Rh4BG023700 Rh4BG025500 Rh4BG250300 Rh4DG100600 Rh5DG257900 Rh6AG184700
rosa_wichuraiana	Rw1G001670 Rw2G009310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	378
AccB1I	GGYRCC	1 cut(s)	310
AccII	CGCG	2 cut(s)	682, 1127
AciI	CCGC	9 cut(s)	283, 338, 497, 596, 680, 682, 724, 1127, 1163
AcoI	YGGCCR	2 cut(s)	683, 1186
AcsI	RAATTY	4 cut(s)	101, 304, 445, 794
AcuI	CTGAAG	3 cut(s)	512, 693, 1025
AfaI	GTAC	1 cut(s)	458
AfiI	CCNNNNNNNGG	1 cut(s)	282
AgsI	TTSAA	8 cut(s)	139, 164, 445, 484, 993, 1082, 1141, 1225
AjiI	CACGTC	1 cut(s)	178
AjnI	CCWGG	2 cut(s)	655, 894
AloI	GAACNNNNNNTCC	2 cut(s)	374, 406
Alw26I	GTCTC	4 cut(s)	13, 290, 814, 1185
AoxI	GGCC	7 cut(s)	474, 512, 683, 897, 957, 1084, 1186
ApeKI	GCWGC	4 cut(s)	740, 743, 763, 782
ApoI	RAATTY	4 cut(s)	101, 304, 445, 794
ArsI	GACNNNNNNTTYG	2 cut(s)	289, 321
Asp700I	GAANNNNTTC	1 cut(s)	988
AspLEI	GCGC	3 cut(s)	379, 577, 1127
AspS9I	GGNCC	2 cut(s)	677, 957
AsuC2I	CCSGG	1 cut(s)	260
AsuHPI	GGTGA	2 cut(s)	75, 355
AsuII	TTCGAA	1 cut(s)	201
AvaII	GGWCC	1 cut(s)	677
BanI	GGYRCC	1 cut(s)	310
BbsI	GAAGAC	2 cut(s)	177, 190
BbvI	GCAGC	4 cut(s)	727, 730, 750, 794
BccI	CCATC	3 cut(s)	315, 947, 1046
BcgI	CGANNNNNNTGC	2 cut(s)	722, 756
BciT130I	CCWGG	2 cut(s)	657, 896
BcnI	CCSGG	1 cut(s)	260
BcoDI	GTCTC	4 cut(s)	13, 290, 814, 1185
BfaI	CTAG	2 cut(s)	753, 1073
BisI	GCNGC	6 cut(s)	497, 683, 741, 744, 764, 783
BlsI	GCNGC	6 cut(s)	498, 684, 742, 745, 765, 784
Bme1390I	CCNGG	3 cut(s)	260, 657, 896
Bme18I	GGWCC	1 cut(s)	677
BmgBI	CACGTC	1 cut(s)	178
BmgT120I	GGNCC	2 cut(s)	677, 957
BmiI	GGNNCC	3 cut(s)	312, 429, 958
BmrFI	CCNGG	3 cut(s)	260, 657, 896
BmsI	GCATC	3 cut(s)	375, 794, 957
BpiI	GAAGAC	2 cut(s)	177, 190
Bpu14I	TTCGAA	1 cut(s)	201
BpuEI	CTTGAG	1 cut(s)	1187
BpuMI	CCSGG	1 cut(s)	260
BsaJI	CCNNGG	2 cut(s)	587, 680
BsaXI	ACNNNNNCTCC	6 cut(s)	110, 140, 374, 404, 464, 494
Bsc4I	CCNNNNNNNGG	1 cut(s)	282
BseBI	CCWGG	2 cut(s)	657, 896
BseDI	CCNNGG	2 cut(s)	587, 680
BseGI	GGATG	3 cut(s)	326, 625, 958
BseLI	CCNNNNNNNGG	1 cut(s)	282
BseMII	CTCAG	1 cut(s)	618
BseRI	GAGGAG	7 cut(s)	32, 52, 379, 467, 551, 566, 716
BseXI	GCAGC	4 cut(s)	727, 730, 750, 794
BsgI	GTGCAG	1 cut(s)	353
Bsh1236I	CGCG	2 cut(s)	682, 1127
BshFI	GGCC	7 cut(s)	476, 514, 685, 899, 959, 1086, 1188
BshNI	GGYRCC	1 cut(s)	310
BsiSI	CCGG	3 cut(s)	260, 314, 515
BslI	CCNNNNNNNGG	1 cut(s)	282
BsmAI	GTCTC	4 cut(s)	13, 290, 814, 1185
BsmBI	CGTCTC	1 cut(s)	290
BsnI	GGCC	7 cut(s)	476, 514, 685, 899, 959, 1086, 1188
Bsp119I	TTCGAA	1 cut(s)	201
BspACI	CCGC	9 cut(s)	283, 338, 497, 596, 680, 682, 724, 1127, 1163
BspANI	GGCC	7 cut(s)	476, 514, 685, 899, 959, 1086, 1188
BspCNI	CTCAG	1 cut(s)	619
BspFNI	CGCG	2 cut(s)	682, 1127
BspLI	GGNNCC	3 cut(s)	312, 429, 958
BspT104I	TTCGAA	1 cut(s)	201
BspT107I	GGYRCC	1 cut(s)	310
BssECI	CCNNGG	2 cut(s)	587, 680
Bst2UI	CCWGG	2 cut(s)	657, 896
Bst4CI	ACNGT	3 cut(s)	252, 865, 1065
Bst6I	CTCTTC	4 cut(s)	16, 38, 148, 1084
BstAPI	GCANNNNNTGC	1 cut(s)	385
BstBI	TTCGAA	1 cut(s)	201
BstC8I	GCNNGC	2 cut(s)	336, 644
BstDEI	CTNAG	2 cut(s)	627, 917
BstDSI	CCRYGG	1 cut(s)	680
BstF5I	GGATG	3 cut(s)	326, 625, 958
BstFNI	CGCG	2 cut(s)	682, 1127
BstHHI	GCGC	3 cut(s)	379, 577, 1127
BstMAI	GTCTC	4 cut(s)	13, 290, 814, 1185
BstMWI	GCNNNNNNNGC	3 cut(s)	385, 496, 652
BstNI	CCWGG	2 cut(s)	657, 896
BstSCI	CCNGG	3 cut(s)	258, 655, 894
BstUI	CGCG	2 cut(s)	682, 1127
BstV1I	GCAGC	4 cut(s)	727, 730, 750, 794
BstV2I	GAAGAC	2 cut(s)	177, 190
BsuRI	GGCC	7 cut(s)	476, 514, 685, 899, 959, 1086, 1188
BtgI	CCRYGG	1 cut(s)	680
BtrI	CACGTC	1 cut(s)	178
BtsCI	GGATG	3 cut(s)	326, 625, 958
Cac8I	GCNNGC	2 cut(s)	336, 644
CfoI	GCGC	3 cut(s)	379, 577, 1127
Cfr13I	GGNCC	2 cut(s)	677, 957
Cfr42I	CCGCGG	1 cut(s)	683
CseI	GACGC	2 cut(s)	181, 818
Csp6I	GTAC	1 cut(s)	457
CspCI	CAANNNNNGTGG	2 cut(s)	142, 177
CviAII	CATG	1 cut(s)	824
CviQI	GTAC	1 cut(s)	457
DdeI	CTNAG	2 cut(s)	627, 917
EaeI	YGGCCR	2 cut(s)	683, 1186
Eam1104I	CTCTTC	4 cut(s)	16, 38, 148, 1084
EarI	CTCTTC	4 cut(s)	16, 38, 148, 1084
EciI	GGCGGA	2 cut(s)	353, 739
Eco32I	GATATC	1 cut(s)	835
Eco47I	GGWCC	1 cut(s)	677
Eco57I	CTGAAG	3 cut(s)	512, 693, 1025
EcoRII	CCWGG	2 cut(s)	655, 894
EcoRV	GATATC	1 cut(s)	835
Esp3I	CGTCTC	1 cut(s)	290
FaeI	CATG	1 cut(s)	827
FatI	CATG	1 cut(s)	823
FauI	CCCGC	2 cut(s)	276, 1170
Fnu4HI	GCNGC	6 cut(s)	497, 683, 741, 744, 764, 783
FokI	GGATG	3 cut(s)	333, 632, 965
Fsp4HI	GCNGC	6 cut(s)	497, 683, 741, 744, 764, 783
FspBI	CTAG	2 cut(s)	753, 1073
FspI	TGCGCA	1 cut(s)	378
GlaI	GCGC	3 cut(s)	378, 576, 1126
GluI	GCNGC	6 cut(s)	497, 683, 741, 744, 764, 783
HaeIII	GGCC	7 cut(s)	476, 514, 685, 899, 959, 1086, 1188
HapII	CCGG	3 cut(s)	260, 314, 515
HgaI	GACGC	2 cut(s)	181, 818
HhaI	GCGC	3 cut(s)	379, 577, 1127
Hin1II	CATG	1 cut(s)	827
Hin6I	GCGC	3 cut(s)	377, 575, 1125
HinP1I	GCGC	3 cut(s)	377, 575, 1125
HincII	GTYRAC	1 cut(s)	1030
HindII	GTYRAC	1 cut(s)	1030
HindIII	AAGCTT	2 cut(s)	158, 1226
HinfI	GANTC	3 cut(s)	583, 923, 1009
HpaII	CCGG	3 cut(s)	260, 314, 515
HphI	GGTGA	2 cut(s)	75, 355
Hpy166II	GTNNAC	4 cut(s)	346, 693, 1030, 1059
Hpy188I	TCNGA	3 cut(s)	395, 588, 983
Hpy188III	TCNNGA	5 cut(s)	289, 664, 789, 944, 1043
Hpy8I	GTNNAC	4 cut(s)	346, 693, 1030, 1059
Hpy99I	CGWCG	2 cut(s)	197, 221
HpyAV	CCTTC	9 cut(s)	63, 145, 200, 319, 352, 601, 668, 779, 1049
HpyCH4III	ACNGT	3 cut(s)	252, 865, 1065
HpyCH4IV	ACGT	1 cut(s)	177
HpyCH4V	TGCA	4 cut(s)	334, 388, 782, 970
HpyF10VI	GCNNNNNNNGC	3 cut(s)	385, 496, 652
HpyF3I	CTNAG	2 cut(s)	627, 917
HpySE526I	ACGT	1 cut(s)	177
Hsp92II	CATG	1 cut(s)	827
HspAI	GCGC	3 cut(s)	377, 575, 1125
KspI	CCGCGG	1 cut(s)	683
LmnI	GCTCC	1 cut(s)	427
Lsp1109I	GCAGC	4 cut(s)	727, 730, 750, 794
LweI	GCATC	3 cut(s)	375, 794, 957
MaeI	CTAG	2 cut(s)	753, 1073
MaeII	ACGT	1 cut(s)	177
MaeIII	GTNAC	2 cut(s)	622, 1065
MluCI	AATT	6 cut(s)	101, 304, 445, 794, 879, 1002
MmeI	TCCRAC	2 cut(s)	405, 594
MroXI	GAANNNNTTC	1 cut(s)	988
MseI	TTAA	5 cut(s)	525, 636, 1005, 1119, 1157
MslI	CAYNNNNRTG	1 cut(s)	965
MspA1I	CMGCKG	3 cut(s)	490, 499, 682
MspI	CCGG	3 cut(s)	260, 314, 515
MspR9I	CCNGG	3 cut(s)	260, 657, 896
MvaI	CCWGG	2 cut(s)	657, 896
MvnI	CGCG	2 cut(s)	682, 1127
MwoI	GCNNNNNNNGC	3 cut(s)	385, 496, 652
NciI	CCSGG	1 cut(s)	260
NlaIII	CATG	1 cut(s)	827
NlaIV	GGNNCC	3 cut(s)	312, 429, 958
NmeAIII	GCCGAG	1 cut(s)	1214
NsbI	TGCGCA	1 cut(s)	378
NspV	TTCGAA	1 cut(s)	201
PcsI	WCGNNNNNNNCGW	3 cut(s)	183, 189, 404
PdmI	GAANNNNTTC	1 cut(s)	988
PfeI	GAWTC	3 cut(s)	583, 923, 1009
PflFI	GACNNNGTC	1 cut(s)	176
PkrI	GCNGC	6 cut(s)	498, 684, 742, 745, 765, 784
Psp6I	CCWGG	2 cut(s)	655, 894
PspGI	CCWGG	2 cut(s)	655, 894
PspN4I	GGNNCC	3 cut(s)	312, 429, 958
PspPI	GGNCC	2 cut(s)	677, 957
PsyI	GACNNNGTC	1 cut(s)	176
PvuII	CAGCTG	1 cut(s)	490
RsaI	GTAC	1 cut(s)	458
RsaNI	GTAC	1 cut(s)	457
RseI	CAYNNNNRTG	1 cut(s)	965
SacII	CCGCGG	1 cut(s)	683
SaqAI	TTAA	5 cut(s)	525, 636, 1005, 1119, 1157
SatI	GCNGC	6 cut(s)	497, 683, 741, 744, 764, 783
Sau96I	GGNCC	2 cut(s)	677, 957
ScrFI	CCNGG	3 cut(s)	260, 657, 896
SfaNI	GCATC	3 cut(s)	375, 794, 957
Sfr303I	CCGCGG	1 cut(s)	683
SfuI	TTCGAA	1 cut(s)	201
SgrBI	CCGCGG	1 cut(s)	683
SinI	GGWCC	1 cut(s)	677
SmiMI	CAYNNNNRTG	1 cut(s)	965
SmlI	CTYRAG	1 cut(s)	1166
SmoI	CTYRAG	1 cut(s)	1166
Sse9I	AATT	6 cut(s)	101, 304, 445, 794, 879, 1002
SsiI	CCGC	9 cut(s)	283, 338, 497, 596, 680, 682, 724, 1127, 1163
SspMI	CTAG	2 cut(s)	753, 1073
StyD4I	CCNGG	3 cut(s)	258, 655, 894
TaaI	ACNGT	3 cut(s)	252, 865, 1065
TaiI	ACGT	1 cut(s)	180
TaqI	TCGA	4 cut(s)	201, 216, 255, 288
TasI	AATT	6 cut(s)	101, 304, 445, 794, 879, 1002
TatI	WGTACW	1 cut(s)	456
TauI	GCSGC	2 cut(s)	499, 685
TfiI	GAWTC	3 cut(s)	583, 923, 1009
Tru1I	TTAA	5 cut(s)	525, 636, 1005, 1119, 1157
Tru9I	TTAA	5 cut(s)	525, 636, 1005, 1119, 1157
TseI	GCWGC	4 cut(s)	740, 743, 763, 782
TspDTI	ATGAA	3 cut(s)	731, 761, 840
TspGWI	ACGGA	2 cut(s)	314, 1167
Tth111I	GACNNNGTC	1 cut(s)	176
VpaK11BI	GGWCC	1 cut(s)	677
XapI	RAATTY	4 cut(s)	101, 304, 445, 794
XmnI	GAANNNNTTC	1 cut(s)	988
XspI	CTAG	2 cut(s)	753, 1073

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.