Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001128

Physical Location & Seq

Genomic Coordinates Reverse (-)

4541015 .. 4551997

Gene Structure 10983 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG024700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGTTTCCCGTTGCAGAGGAGGCTGACGAAGAGGGATGGCTGGAGTTCCGGGTTGACGGTGGGCAGTTGGTTAGGGAGCGGGCTAGACTTGAGCAGCATGAAATTGAAGTTGAGGAGGAAGCGAGAGAGGAAGAGATTCAGACTGATGAGATTGAGCCGCTGCAGTTGAGGAATGTGCAATTGGCAGAGGAACTTGCAAGAATCAAAAGCAAAGCTGGCAACTGCCGAAGAAAAACTGGGTGTGGATTCCACAGCGGTTCCGGCTGGACCTCGTTCTCAGGGTACTGCCTTAGGCCTGTTACCGTACATGGCTATGGTGACCCTGTCCTTTGTTCACAGGAGGAAAAGCTGATGCTGCATAGGCAAAAACCTGATATGGCTTCTGCCACCTCTAGTAAATGGTTGCCCCTTCACACTCTTGCCGTATCAGGAGAATATTACATTATGCACGCTTTATCAAAACATGAAGCTGATATTAATGCTGCGGATAAGGATGATTGGACTGTTCTTGACAAGGCAATTATCGGTAAAAACCAGGCCATTACAGACTATCTTCTCAGAGATTCGGCTAATCCATTTGTTCGTGATAAAGGGGTCGGTGTTGTGTTAGCTCTTTGCTCTAAAAGAAGTTTTATGTGGATACATGATGGCACTGCCTCAATGCAGTATGCTGTCCGGACAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Ank_2 Ank_4 Ank_5 RRM_1

Protein Analysis

228

Amino Acids

25.68

Weight (kDa)

5.32

Isoelectric Point (pI)

47.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	119 - 195	8.5e-06	Ankyrin repeats (3 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66055 AT5G66055
fragaria_vesca	FvH4_1g10990 FvH4_1g10990
malus_domestica	MD15G1236900.v1.1
prunus_persica	Prupe.7G175600_v2.0.a1
pyrus_communis	pycom15g21070
rosa_chinensis	RchiOBHm_Chr1g0316921 RchiOBHm_Chr1g0316981 RchiOBHm_Chr2g0098251 RchiOBHm_Chr2g0145411 RchiOBHm_Chr4g0390291 RchiOBHm_Chr5g0073551
rosa_laevigata	RLG00000001656 RLG00000016779 RLG00000027817 RLG00000030637 RLG00000032089
rosa_multiflora	Rmu_co8173478.1_g000001 Rmu_sc0000104.1_g000031 Rmu_sc0000712.1_g000024 Rmu_sc0001298.1_g000058 Rmu_sc0002048.1_g000015 Rmu_sc0002398.1_g000019 Rmu_sc0004138.1_g000005 Rmu_sc0007472.1_g000006 Rmu_sc0009922.1_g000006
rosa_roxburghii	Rroxscaffold_2G00094620 Rroxscaffold_2G00144120
rosa_rugosa	Rorug02G0071600 Rorug02G0547800 Rorug04G0008500 Rorug04G0008600 Rorug04G0008600 Rorug04G0208000 Rorug05G0455100.1
rosa_samantha	Rh1AG024600 Rh1AG024700 Rh1CG022000 Rh1CG022900 Rh1DG021700 Rh2AG118600 Rh2BG121700 Rh2BG300700 Rh2BG456300 Rh2CG123300 Rh2CG279400 Rh2DG123300 Rh2DG466200 Rh4AG245100 Rh4BG023700 Rh4BG025500 Rh4BG250300 Rh4DG100600 Rh5DG257900 Rh6AG184700
rosa_wichuraiana	Rw1G001670 Rw2G009310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	79
AccIII	TCCGGA	1 cut(s)	675
AciI	CCGC	4 cut(s)	79, 158, 255, 485
AfaI	GTAC	2 cut(s)	284, 306
AgsI	TTSAA	1 cut(s)	107
AjnI	CCWGG	1 cut(s)	534
AjuI	GAANNNNNNNTTGG	2 cut(s)	164, 196
AluBI	AGCT	5 cut(s)	215, 349, 470, 611, 683
AluI	AGCT	5 cut(s)	215, 349, 470, 611, 683
Aor13HI	TCCGGA	1 cut(s)	675
AoxI	GGCC	2 cut(s)	293, 537
ApeKI	GCWGC	4 cut(s)	94, 160, 355, 482
AseI	ATTAAT	1 cut(s)	477
Asp700I	GAANNNNTTC	1 cut(s)	135
AspS9I	GGNCC	1 cut(s)	267
AsuC2I	CCSGG	1 cut(s)	50
AsuHPI	GGTGA	1 cut(s)	329
AvaII	GGWCC	1 cut(s)	267
AxyI	CCTNAGG	1 cut(s)	290
BbvI	GCAGC	4 cut(s)	106, 147, 342, 469
BccI	CCATC	2 cut(s)	30, 641
BceAI	ACGGC	1 cut(s)	407
BciT130I	CCWGG	1 cut(s)	536
BciVI	GTATCC	1 cut(s)	633
BcnI	CCSGG	1 cut(s)	50
BfaI	CTAG	2 cut(s)	84, 393
BfmI	CTRYAG	1 cut(s)	161
BfuI	GTATCC	1 cut(s)	633
BisI	GCNGC	5 cut(s)	95, 158, 161, 356, 483
BlsI	GCNGC	5 cut(s)	96, 159, 162, 357, 484
Bme1390I	CCNGG	2 cut(s)	50, 536
Bme18I	GGWCC	1 cut(s)	267
BmgT120I	GGNCC	1 cut(s)	267
BmiI	GGNNCC	1 cut(s)	259
BmrFI	CCNGG	2 cut(s)	50, 536
BmrI	ACTGGG	1 cut(s)	246
BmsI	GCATC	1 cut(s)	342
BmuI	ACTGGG	1 cut(s)	246
BpmI	CTGGAG	1 cut(s)	62
BpuEI	CTTGAG	1 cut(s)	110
BpuMI	CCSGG	1 cut(s)	50
BsaWI	WCCGGW	1 cut(s)	675
Bse1I	ACTGG	1 cut(s)	241
Bse21I	CCTNAGG	1 cut(s)	290
BseAI	TCCGGA	1 cut(s)	675
BseBI	CCWGG	1 cut(s)	536
BseGI	GGATG	2 cut(s)	41, 499
BseMII	CTCAG	2 cut(s)	291, 571
BseNI	ACTGG	1 cut(s)	241
BseRI	GAGGAG	2 cut(s)	32, 128
BseXI	GCAGC	4 cut(s)	106, 147, 342, 469
BshFI	GGCC	2 cut(s)	295, 539
BsiSI	CCGG	3 cut(s)	49, 261, 676
BsnI	GGCC	2 cut(s)	295, 539
Bsp13I	TCCGGA	1 cut(s)	675
BspACI	CCGC	4 cut(s)	79, 158, 255, 485
BspANI	GGCC	2 cut(s)	295, 539
BspCNI	CTCAG	2 cut(s)	290, 570
BspEI	TCCGGA	1 cut(s)	675
BspLI	GGNNCC	1 cut(s)	259
BspMAI	CTGCAG	1 cut(s)	165
BsrBI	CCGCTC	1 cut(s)	79
BsrI	ACTGG	1 cut(s)	241
Bst2UI	CCWGG	1 cut(s)	536
Bst4CI	ACNGT	3 cut(s)	59, 304, 505
Bst6I	CTCTTC	2 cut(s)	24, 126
BstC8I	GCNNGC	3 cut(s)	81, 217, 450
BstDEI	CTNAG	3 cut(s)	277, 290, 557
BstEII	GGTNACC	1 cut(s)	317
BstF5I	GGATG	2 cut(s)	41, 499
BstMWI	GCNNNNNNNGC	5 cut(s)	20, 216, 261, 355, 361
BstNI	CCWGG	1 cut(s)	536
BstPI	GGTNACC	1 cut(s)	317
BstSCI	CCNGG	2 cut(s)	48, 534
BstSFI	CTRYAG	1 cut(s)	161
BstV1I	GCAGC	4 cut(s)	106, 147, 342, 469
Bsu36I	CCTNAGG	1 cut(s)	290
BsuI	GTATCC	1 cut(s)	633
BsuRI	GGCC	2 cut(s)	295, 539
BtsCI	GGATG	2 cut(s)	41, 499
BtsI	GCAGTG	1 cut(s)	651
BtsIMutI	CAGTG	1 cut(s)	651
Cac8I	GCNNGC	3 cut(s)	81, 217, 450
Cfr13I	GGNCC	1 cut(s)	267
Csp6I	GTAC	2 cut(s)	283, 305
CviAII	CATG	4 cut(s)	98, 308, 464, 644
CviQI	GTAC	2 cut(s)	283, 305
DdeI	CTNAG	3 cut(s)	277, 290, 557
Eam1104I	CTCTTC	2 cut(s)	24, 126
EarI	CTCTTC	2 cut(s)	24, 126
Eco147I	AGGCCT	1 cut(s)	295
Eco47I	GGWCC	1 cut(s)	267
Eco81I	CCTNAGG	1 cut(s)	290
Eco91I	GGTNACC	1 cut(s)	317
EcoO65I	GGTNACC	1 cut(s)	317
EcoRII	CCWGG	1 cut(s)	534
FaeI	CATG	4 cut(s)	101, 311, 467, 647
FatI	CATG	4 cut(s)	97, 307, 463, 643
FauI	CCCGC	1 cut(s)	72
Fnu4HI	GCNGC	5 cut(s)	95, 158, 161, 356, 483
FokI	GGATG	2 cut(s)	48, 506
Fsp4HI	GCNGC	5 cut(s)	95, 158, 161, 356, 483
FspBI	CTAG	2 cut(s)	84, 393
GluI	GCNGC	5 cut(s)	95, 158, 161, 356, 483
GsuI	CTGGAG	1 cut(s)	62
HaeIII	GGCC	2 cut(s)	295, 539
HapII	CCGG	3 cut(s)	49, 261, 676
Hin1II	CATG	4 cut(s)	101, 311, 467, 647
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HinfI	GANTC	4 cut(s)	136, 201, 246, 563
HpaII	CCGG	3 cut(s)	49, 261, 676
HphI	GGTGA	1 cut(s)	329
Hpy166II	GTNNAC	2 cut(s)	55, 335
Hpy188I	TCNGA	2 cut(s)	141, 560
Hpy188III	TCNNGA	4 cut(s)	429, 509, 584, 676
Hpy8I	GTNNAC	2 cut(s)	55, 335
HpyAV	CCTTC	1 cut(s)	419
HpyCH4III	ACNGT	3 cut(s)	59, 304, 505
HpyCH4V	TGCA	7 cut(s)	14, 163, 178, 197, 358, 448, 664
HpyF10VI	GCNNNNNNNGC	5 cut(s)	20, 216, 261, 355, 361
HpyF3I	CTNAG	3 cut(s)	277, 290, 557
Hsp92II	CATG	4 cut(s)	101, 311, 467, 647
Kpn2I	TCCGGA	1 cut(s)	675
LmnI	GCTCC	1 cut(s)	76
Lsp1109I	GCAGC	4 cut(s)	106, 147, 342, 469
LweI	GCATC	1 cut(s)	342
MaeI	CTAG	2 cut(s)	84, 393
MaeIII	GTNAC	2 cut(s)	298, 317
MbiI	CCGCTC	1 cut(s)	79
MboII	GAAGA	4 cut(s)	41, 143, 240, 545
MfeI	CAATTG	1 cut(s)	179
MluCI	AATT	3 cut(s)	102, 179, 519
MroI	TCCGGA	1 cut(s)	675
MroXI	GAANNNNTTC	1 cut(s)	135
MseI	TTAA	1 cut(s)	477
MslI	CAYNNNNRTG	1 cut(s)	312
MspA1I	CMGCKG	2 cut(s)	160, 255
MspI	CCGG	3 cut(s)	49, 261, 676
MspR9I	CCNGG	2 cut(s)	50, 536
MunI	CAATTG	1 cut(s)	179
MvaI	CCWGG	1 cut(s)	536
MwoI	GCNNNNNNNGC	5 cut(s)	20, 216, 261, 355, 361
NciI	CCSGG	1 cut(s)	50
NlaIII	CATG	4 cut(s)	101, 311, 467, 647
NlaIV	GGNNCC	1 cut(s)	259
NmuCI	GTSAC	1 cut(s)	317
PceI	AGGCCT	1 cut(s)	295
PdmI	GAANNNNTTC	1 cut(s)	135
PfeI	GAWTC	4 cut(s)	136, 201, 246, 563
PflFI	GACNNNGTC	1 cut(s)	323
PkrI	GCNGC	5 cut(s)	96, 159, 162, 357, 484
PshBI	ATTAAT	1 cut(s)	477
Psp6I	CCWGG	1 cut(s)	534
PspEI	GGTNACC	1 cut(s)	317
PspGI	CCWGG	1 cut(s)	534
PspN4I	GGNNCC	1 cut(s)	259
PspPI	GGNCC	1 cut(s)	267
PstI	CTGCAG	1 cut(s)	165
PsyI	GACNNNGTC	1 cut(s)	323
RsaI	GTAC	2 cut(s)	284, 306
RsaNI	GTAC	2 cut(s)	283, 305
RseI	CAYNNNNRTG	1 cut(s)	312
SaqAI	TTAA	1 cut(s)	477
SatI	GCNGC	5 cut(s)	95, 158, 161, 356, 483
Sau96I	GGNCC	1 cut(s)	267
ScrFI	CCNGG	2 cut(s)	50, 536
SetI	ASST	8 cut(s)	217, 272, 351, 373, 392, 472, 613, 685
SfaNI	GCATC	1 cut(s)	342
SfcI	CTRYAG	1 cut(s)	161
SinI	GGWCC	1 cut(s)	267
SmiMI	CAYNNNNRTG	1 cut(s)	312
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	3 cut(s)	102, 179, 519
SseBI	AGGCCT	1 cut(s)	295
SsiI	CCGC	4 cut(s)	79, 158, 255, 485
SspI	AATATT	1 cut(s)	437
SspMI	CTAG	2 cut(s)	84, 393
StuI	AGGCCT	1 cut(s)	295
StyD4I	CCNGG	2 cut(s)	48, 534
TaaI	ACNGT	3 cut(s)	59, 304, 505
TasI	AATT	3 cut(s)	102, 179, 519
TauI	GCSGC	1 cut(s)	160
TfiI	GAWTC	4 cut(s)	136, 201, 246, 563
Tru1I	TTAA	1 cut(s)	477
Tru9I	TTAA	1 cut(s)	477
TscAI	CASTG	1 cut(s)	658
TseFI	GTSAC	1 cut(s)	317
TseI	GCWGC	4 cut(s)	94, 160, 355, 482
Tsp45I	GTSAC	1 cut(s)	317
TspDTI	ATGAA	2 cut(s)	114, 480
TspRI	CASTG	1 cut(s)	658
Tth111I	GACNNNGTC	1 cut(s)	323
VpaK11BI	GGWCC	1 cut(s)	267
VspI	ATTAAT	1 cut(s)	477
XmnI	GAANNNNTTC	1 cut(s)	135
XspI	CTAG	2 cut(s)	84, 393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.