Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001128

Physical Location & Seq

Genomic Coordinates Reverse (-)

1424063 .. 1425401

Gene Structure 1339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0008500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGAGGGTCAACATTTCAGCTGGCTGTGTTGTGGTGGCTCTCCTGTGTGTGTTTCTTGTGAGCGATTCGGTTGTGGGTGATGAAGATCCTAAGGTTAAGGACGATAAACACTTGTTTTTTAAGCGCCCAGTCCCGCATTTTGTTAAGGGAGGAGGCCTAGGTGGAGGCATTGGTGGAGGAGGTGGCCTAGGGCATGGGATTTATAGGAAGGGGTTTAAGCATGGAAGATTTCCTCGAGGTGGACTTGGCGGCGGTCTTGGAGGCGCAGGTGGGCTTGGCGGTGGCCTTGGAGGAGGGGGTGGTCTAGGGGGAGGTGCTGGAGGTGGGTTGGGAGGCGGTGGAGGTCTAGGTGGAGGTGCAGGAGGCGGTTTAGGCGGAGGAGCTGGAGGTGGTTTAGGCGGAGGTGCTGGTGGAGGTTTAGGCGGTGGAGGTGGACTTGGACATGGTGGGGGTCTTGGTGGCGGAGGTGGACTTGGCCACGGTGGGGGTCTAGGTGGCGGAGGTGGACTTGGACATGGTGGGGGTCTTGGTGGCGGAGGTGGACTTGGCCACGGTGGGGGTCTAGGTGGAGGAGGTGGACTTGGCCACGGTGGCGGTGCTGGAGCCGGTGGTGGGTTTGGTGGTGGAGCTGGAGGAGGTGGTGGCCTTGGCGGTGGAGCTGGAGGAGGTGGTGGACTTGGAGGTGGAGGTGGAGCGGGAGGTGGTGCAGGTGGAGGCTTTGGCGGTGGTGCAGGTGGCGGGGCTGGAGGAGGTGTTGGAGGTGGTGCTGGTGGAGGGGGTGGGTTTGGGGGTGGTGGAGGAGTTGGTGGTGGAGCCGGTGCTGGAGGAGGGTTTGGAGCTGGTGGTGGAGTAGGGGGCGGAGGAGGTGTTGGTGGCGGTGGAGGTGGTGGGTTTGGTGGAGGTGGCGGAGGTGGTTTTGGTGCTGGTGGTGGGGCTGGCTTCGGTGGTGGAGCTGGATTCGGAGGTGGCGGCGGTCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004012 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006900 GO:0006996 GO:0008150 GO:0009987 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031984 GO:0033036 GO:0034204 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045332 GO:0048193 GO:0048194 GO:0051179 GO:0051234 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0071944 GO:0097035 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase E1-E2_ATPase PhoLip_ATPase_C PhoLip_ATPase_N

Protein Analysis

326

Amino Acids

25.24

Weight (kDa)

9.83

Isoelectric Point (pI)

54.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66055 AT5G66055
fragaria_vesca	FvH4_1g10990 FvH4_1g10990
malus_domestica	MD15G1236900.v1.1
prunus_persica	Prupe.7G175600_v2.0.a1
pyrus_communis	pycom15g21070
rosa_chinensis	RchiOBHm_Chr1g0316921 RchiOBHm_Chr1g0316981 RchiOBHm_Chr2g0098251 RchiOBHm_Chr2g0145411 RchiOBHm_Chr4g0390291 RchiOBHm_Chr5g0073551
rosa_laevigata	RLG00000001656 RLG00000016779 RLG00000027817 RLG00000030637 RLG00000032089
rosa_multiflora	Rmu_co8173478.1_g000001 Rmu_sc0000104.1_g000031 Rmu_sc0000712.1_g000024 Rmu_sc0001298.1_g000058 Rmu_sc0002048.1_g000015 Rmu_sc0002398.1_g000019 Rmu_sc0004138.1_g000005 Rmu_sc0007472.1_g000006 Rmu_sc0009922.1_g000006
rosa_roxburghii	Rroxscaffold_2G00094620 Rroxscaffold_2G00144120
rosa_rugosa	Rorug02G0071600 Rorug02G0547800 Rorug04G0008500 Rorug04G0008600 Rorug04G0008600 Rorug04G0208000 Rorug05G0455100.1
rosa_samantha	Rh1AG024600 Rh1AG024700 Rh1CG022000 Rh1CG022900 Rh1DG021700 Rh2AG118600 Rh2BG121700 Rh2BG300700 Rh2BG456300 Rh2CG123300 Rh2CG279400 Rh2DG123300 Rh2DG466200 Rh4AG245100 Rh4BG023700 Rh4BG025500 Rh4BG250300 Rh4DG100600 Rh5DG257900 Rh6AG184700
rosa_wichuraiana	Rw1G001670 Rw2G009310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	3 cut(s)	257, 698, 722
AbsI	CCTCGAGG	1 cut(s)	234
Acc36I	ACCTGC	3 cut(s)	257, 698, 722
AccBSI	CCGCTC	1 cut(s)	695
AclWI	GGATC	1 cut(s)	80
AcoI	YGGCCR	3 cut(s)	475, 547, 583
AfiI	CCNNNNNNNGG	4 cut(s)	239, 484, 556, 612
AluBI	AGCT	6 cut(s)	20, 383, 629, 659, 839, 953
AluI	AGCT	6 cut(s)	20, 383, 629, 659, 839, 953
AlwI	GGATC	1 cut(s)	80
Ama87I	CYCGRG	1 cut(s)	234
AoxI	GGCC	7 cut(s)	154, 184, 283, 475, 547, 583, 643
AspA2I	CCTAGG	2 cut(s)	157, 187
AspLEI	GCGC	2 cut(s)	126, 266
AsuHPI	GGTGA	1 cut(s)	89
AvaI	CYCGRG	1 cut(s)	234
AvrII	CCTAGG	2 cut(s)	157, 187
AxyI	CCTNAGG	1 cut(s)	90
BalI	TGGCCA	3 cut(s)	477, 549, 585
BfaI	CTAG	7 cut(s)	158, 188, 305, 347, 491, 563, 979
BfoI	RGCGCY	1 cut(s)	127
BfuAI	ACCTGC	3 cut(s)	257, 698, 722
BglI	GCCNNNNNGGC	1 cut(s)	591
BisI	GCNGC	2 cut(s)	250, 970
BlnI	CCTAGG	2 cut(s)	157, 187
BlsI	GCNGC	2 cut(s)	251, 971
BmeT110I	CYCGRG	1 cut(s)	234
BmiI	GGNNCC	2 cut(s)	604, 814
BmrI	ACTGGG	1 cut(s)	122
BmuI	ACTGGG	1 cut(s)	122
BpmI	CTGGAG	7 cut(s)	339, 405, 621, 651, 681, 765, 843
BsaBI	GATNNNNATC	1 cut(s)	84
BsaJI	CCNNGG	7 cut(s)	157, 187, 286, 478, 550, 586, 646
BsaXI	ACNNNNNCTCC	4 cut(s)	738, 768, 852, 882
Bsc4I	CCNNNNNNNGG	4 cut(s)	239, 484, 556, 612
Bse118I	RCCGGY	2 cut(s)	605, 815
Bse1I	ACTGG	1 cut(s)	128
Bse21I	CCTNAGG	1 cut(s)	90
Bse8I	GATNNNNATC	1 cut(s)	84
BseDI	CCNNGG	7 cut(s)	157, 187, 286, 478, 550, 586, 646
BseJI	GATNNNNATC	1 cut(s)	84
BseLI	CCNNNNNNNGG	4 cut(s)	239, 484, 556, 612
BseNI	ACTGG	1 cut(s)	128
BsgI	GTGCAG	3 cut(s)	378, 726, 750
BshFI	GGCC	7 cut(s)	156, 186, 285, 477, 549, 585, 645
BsiHKCI	CYCGRG	1 cut(s)	234
BsiSI	CCGG	2 cut(s)	606, 816
BslFI	GGGAC	1 cut(s)	116
BslI	CCNNNNNNNGG	4 cut(s)	239, 484, 556, 612
BsmFI	GGGAC	1 cut(s)	116
BsnI	GGCC	7 cut(s)	156, 186, 285, 477, 549, 585, 645
BsoBI	CYCGRG	1 cut(s)	234
Bsp143I	GATC	1 cut(s)	85
BspANI	GGCC	7 cut(s)	156, 186, 285, 477, 549, 585, 645
BspLI	GGNNCC	2 cut(s)	604, 814
BspMI	ACCTGC	3 cut(s)	257, 698, 722
BspPI	GGATC	1 cut(s)	80
BsrBI	CCGCTC	1 cut(s)	695
BsrFI	RCCGGY	2 cut(s)	605, 815
BsrI	ACTGG	1 cut(s)	128
BssAI	RCCGGY	2 cut(s)	605, 815
BssECI	CCNNGG	7 cut(s)	157, 187, 286, 478, 550, 586, 646
BssMI	GATC	1 cut(s)	85
BssT1I	CCWWGG	4 cut(s)	157, 187, 286, 646
Bst4CI	ACNGT	3 cut(s)	482, 554, 590
BstC8I	GCNNGC	2 cut(s)	22, 937
BstDEI	CTNAG	1 cut(s)	90
BstDSI	CCRYGG	3 cut(s)	478, 550, 586
BstH2I	RGCGCY	1 cut(s)	127
BstHHI	GCGC	2 cut(s)	126, 266
BstKTI	GATC	1 cut(s)	88
BstMBI	GATC	1 cut(s)	85
BstMWI	GCNNNNNNNGC	2 cut(s)	372, 591
BstX2I	RGATCY	1 cut(s)	85
BstYI	RGATCY	1 cut(s)	85
Bsu36I	CCTNAGG	1 cut(s)	90
BsuRI	GGCC	7 cut(s)	156, 186, 285, 477, 549, 585, 645
BtgI	CCRYGG	3 cut(s)	478, 550, 586
BveI	ACCTGC	3 cut(s)	257, 698, 722
Cac8I	GCNNGC	2 cut(s)	22, 937
CfoI	GCGC	2 cut(s)	126, 266
Cfr10I	RCCGGY	2 cut(s)	605, 815
CviAII	CATG	4 cut(s)	194, 221, 443, 515
DdeI	CTNAG	1 cut(s)	90
DpnI	GATC	1 cut(s)	87
DpnII	GATC	1 cut(s)	85
EaeI	YGGCCR	3 cut(s)	475, 547, 583
EciI	GGCGGA	7 cut(s)	390, 414, 477, 513, 549, 873, 921
Eco130I	CCWWGG	4 cut(s)	157, 187, 286, 646
Eco147I	AGGCCT	1 cut(s)	156
Eco81I	CCTNAGG	1 cut(s)	90
Eco88I	CYCGRG	1 cut(s)	234
EcoT14I	CCWWGG	4 cut(s)	157, 187, 286, 646
ErhI	CCWWGG	4 cut(s)	157, 187, 286, 646
FaeI	CATG	4 cut(s)	197, 224, 446, 518
FaiI	YATR	5 cut(s)	195, 204, 222, 444, 516
FaqI	GGGAC	1 cut(s)	116
FatI	CATG	4 cut(s)	193, 220, 442, 514
FauI	CCCGC	3 cut(s)	141, 688, 731
Fnu4HI	GCNGC	2 cut(s)	250, 970
Fsp4HI	GCNGC	2 cut(s)	250, 970
FspBI	CTAG	7 cut(s)	158, 188, 305, 347, 491, 563, 979
GlaI	GCGC	2 cut(s)	125, 265
GluI	GCNGC	2 cut(s)	250, 970
GsuI	CTGGAG	7 cut(s)	339, 405, 621, 651, 681, 765, 843
HaeII	RGCGCY	1 cut(s)	127
HaeIII	GGCC	7 cut(s)	156, 186, 285, 477, 549, 585, 645
HapII	CCGG	2 cut(s)	606, 816
HhaI	GCGC	2 cut(s)	126, 266
Hin1II	CATG	4 cut(s)	197, 224, 446, 518
Hin6I	GCGC	2 cut(s)	124, 264
HinP1I	GCGC	2 cut(s)	124, 264
HincII	GTYRAC	1 cut(s)	10
HindII	GTYRAC	1 cut(s)	10
HinfI	GANTC	2 cut(s)	65, 957
HpaII	CCGG	2 cut(s)	606, 816
HphI	GGTGA	1 cut(s)	89
Hpy166II	GTNNAC	8 cut(s)	10, 242, 434, 470, 506, 542, 578, 674
Hpy188I	TCNGA	1 cut(s)	962
Hpy8I	GTNNAC	8 cut(s)	10, 242, 434, 470, 506, 542, 578, 674
HpyAV	CCTTC	1 cut(s)	202
HpyCH4III	ACNGT	3 cut(s)	482, 554, 590
HpyCH4V	TGCA	3 cut(s)	359, 707, 731
HpyF10VI	GCNNNNNNNGC	2 cut(s)	372, 591
HpyF3I	CTNAG	1 cut(s)	90
Hsp92II	CATG	4 cut(s)	197, 224, 446, 518
HspAI	GCGC	2 cut(s)	124, 264
Kzo9I	GATC	1 cut(s)	85
LmnI	GCTCC	8 cut(s)	380, 602, 626, 656, 692, 812, 836, 950
MaeI	CTAG	7 cut(s)	158, 188, 305, 347, 491, 563, 979
MaeIII	GTNAC	1 cut(s)	974
MalI	GATC	1 cut(s)	87
MbiI	CCGCTC	1 cut(s)	695
MboI	GATC	1 cut(s)	85
MboII	GAAGA	2 cut(s)	95, 237
MflI	RGATCY	1 cut(s)	85
MlsI	TGGCCA	3 cut(s)	477, 549, 585
MluNI	TGGCCA	3 cut(s)	477, 549, 585
MmeI	TCCRAC	1 cut(s)	736
Mox20I	TGGCCA	3 cut(s)	477, 549, 585
MscI	TGGCCA	3 cut(s)	477, 549, 585
MseI	TTAA	4 cut(s)	96, 120, 144, 216
Msp20I	TGGCCA	3 cut(s)	477, 549, 585
MspA1I	CMGCKG	1 cut(s)	20
MspI	CCGG	2 cut(s)	606, 816
MwoI	GCNNNNNNNGC	2 cut(s)	372, 591
NdeII	GATC	1 cut(s)	85
NlaIII	CATG	4 cut(s)	197, 224, 446, 518
NlaIV	GGNNCC	2 cut(s)	604, 814
NmuCI	GTSAC	1 cut(s)	974
PaeR7I	CTCGAG	1 cut(s)	234
PaqCI	CACCTGC	3 cut(s)	257, 698, 722
PceI	AGGCCT	1 cut(s)	156
PfeI	GAWTC	2 cut(s)	65, 957
PkrI	GCNGC	2 cut(s)	251, 971
PspN4I	GGNNCC	2 cut(s)	604, 814
PspXI	VCTCGAGB	1 cut(s)	234
PsuI	RGATCY	1 cut(s)	85
PvuII	CAGCTG	1 cut(s)	20
SaqAI	TTAA	4 cut(s)	96, 120, 144, 216
SatI	GCNGC	2 cut(s)	250, 970
Sau3AI	GATC	1 cut(s)	85
Sfr274I	CTCGAG	1 cut(s)	234
SlaI	CTCGAG	1 cut(s)	234
SmlI	CTYRAG	1 cut(s)	234
SmoI	CTYRAG	1 cut(s)	234
SseBI	AGGCCT	1 cut(s)	156
SspMI	CTAG	7 cut(s)	158, 188, 305, 347, 491, 563, 979
StuI	AGGCCT	1 cut(s)	156
StyI	CCWWGG	4 cut(s)	157, 187, 286, 646
TaaI	ACNGT	3 cut(s)	482, 554, 590
TaqI	TCGA	1 cut(s)	235
TauI	GCSGC	2 cut(s)	252, 972
TfiI	GAWTC	2 cut(s)	65, 957
Tru1I	TTAA	4 cut(s)	96, 120, 144, 216
Tru9I	TTAA	4 cut(s)	96, 120, 144, 216
TseFI	GTSAC	1 cut(s)	974
Tsp45I	GTSAC	1 cut(s)	974
TspDTI	ATGAA	1 cut(s)	96
XhoI	CTCGAG	1 cut(s)	234
XmaJI	CCTAGG	2 cut(s)	157, 187
XspI	CTAG	7 cut(s)	158, 188, 305, 347, 491, 563, 979

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.