Rh4BG023700

Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Forward (+)
3789280 .. 3789887
608 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG023700.1

Sequence Viewer

Length: 438 bp
ATGGAACGCTTTATAGAAGAAGCCCTTAAAAGGCTGAAAAAGAAAGAGGATGTGGAGGCAAACAATCGAAAGGTGAAAGTATATGGTAGGAATTATACATTCATTGAGACCAGATGGAAGAAGCTCAGAGTTGGTGATCTTGTCAAGGTGCACAAGGATGAGTACTTCCTTGCTGATCTGCTTTTGCTTTCATCAAGCTATGAGGATGGCATTTTCTATGTGGAAACTATGAACCTTGATGGAGAAACAAATTTAAAATTGAACCATGCACTGGAGGCGACATCCCACCTTCATGATGAAAATTCCTTGGAAAGATTTAGGGCAGTGATCAAGTGTGAGGACCCAAATAAAATTCTATATTCATTTATTGGGACTTTGTTCTACAACGGCAGAGAACACCCACTTTCCTTGCATCAGATGATGAAAAATACAGATTGA

Protein Analysis

145

Amino Acids

17.17

Weight (kDa)

6.6

Isoelectric Point (pI)

28.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 271
AcsI RAATTY 3 cut(s) 250, 301, 351
AfaI GTAC 1 cut(s) 164
AfiI CCNNNNNNNGG 2 cut(s) 30, 271
AgsI TTSAA 1 cut(s) 262
AluBI AGCT 2 cut(s) 124, 198
AluI AGCT 2 cut(s) 124, 198
Alw21I GWGCWC 1 cut(s) 153
Alw26I GTCTC 1 cut(s) 101
Alw44I GTGCAC 1 cut(s) 149
ApaLI GTGCAC 1 cut(s) 149
ApoI RAATTY 3 cut(s) 250, 301, 351
AspS9I GGNCC 1 cut(s) 340
AsuHPI GGTGA 2 cut(s) 85, 146
AvaII GGWCC 1 cut(s) 340
BaeGI GKGCMC 1 cut(s) 153
Bbv12I GWGCWC 1 cut(s) 153
BccI CCATC 3 cut(s) 108, 200, 233
BceAI ACGGC 1 cut(s) 403
BclI TGATCA 1 cut(s) 327
BcoDI GTCTC 1 cut(s) 101
BmcAI AGTACT 1 cut(s) 164
Bme18I GGWCC 1 cut(s) 340
BmgT120I GGNCC 1 cut(s) 340
BmiI GGNNCC 1 cut(s) 342
BmsI GCATC 1 cut(s) 421
BpmI CTGGAG 1 cut(s) 293
BsaI GGTCTC 1 cut(s) 101
BsaJI CCNNGG 1 cut(s) 306
Bsc4I CCNNNNNNNGG 2 cut(s) 30, 271
Bse1I ACTGG 1 cut(s) 276
BseDI CCNNGG 1 cut(s) 306
BseGI GGATG 4 cut(s) 55, 163, 211, 281
BseLI CCNNNNNNNGG 2 cut(s) 30, 271
BseMII CTCAG 1 cut(s) 139
BseNI ACTGG 1 cut(s) 276
BseSI GKGCMC 1 cut(s) 153
BsiHKAI GWGCWC 1 cut(s) 153
BslFI GGGAC 1 cut(s) 385
BslI CCNNNNNNNGG 2 cut(s) 30, 271
BsmAI GTCTC 1 cut(s) 101
BsmFI GGGAC 1 cut(s) 385
Bso31I GGTCTC 1 cut(s) 101
Bsp1286I GDGCHC 1 cut(s) 153
Bsp143I GATC 3 cut(s) 136, 175, 327
BspCNI CTCAG 1 cut(s) 138
BspHI TCATGA 1 cut(s) 292
BspLI GGNNCC 1 cut(s) 342
BspTNI GGTCTC 1 cut(s) 101
BsrI ACTGG 1 cut(s) 276
BssECI CCNNGG 1 cut(s) 306
BssMI GATC 3 cut(s) 136, 175, 327
BssT1I CCWWGG 1 cut(s) 306
BstDEI CTNAG 1 cut(s) 125
BstF5I GGATG 4 cut(s) 55, 163, 211, 281
BstKTI GATC 3 cut(s) 139, 178, 330
BstMAI GTCTC 1 cut(s) 101
BstMBI GATC 3 cut(s) 136, 175, 327
BstMWI GCNNNNNNNGC 1 cut(s) 275
BstSLI GKGCMC 1 cut(s) 153
BtsCI GGATG 4 cut(s) 55, 163, 211, 281
BtsI GCAGTG 1 cut(s) 330
BtsIMutI CAGTG 2 cut(s) 269, 330
CciI TCATGA 1 cut(s) 292
Cfr13I GGNCC 1 cut(s) 340
Csp6I GTAC 1 cut(s) 163
CspCI CAANNNNNGTGG 2 cut(s) 390, 425
CviAII CATG 2 cut(s) 266, 293
CviJI RGCY 4 cut(s) 23, 34, 124, 198
CviKI_1 RGCY 4 cut(s) 23, 34, 124, 198
CviQI GTAC 1 cut(s) 163
DdeI CTNAG 1 cut(s) 125
DpnI GATC 3 cut(s) 138, 177, 329
DpnII GATC 3 cut(s) 136, 175, 327
DraI TTTAAA 1 cut(s) 255
Eco130I CCWWGG 1 cut(s) 306
Eco31I GGTCTC 1 cut(s) 101
Eco47I GGWCC 1 cut(s) 340
EcoO109I RGGNCCY 1 cut(s) 340
EcoT14I CCWWGG 1 cut(s) 306
ErhI CCWWGG 1 cut(s) 306
FaeI CATG 2 cut(s) 269, 296
FalI AAGNNNNNCTT 2 cut(s) 9, 41
FaqI GGGAC 1 cut(s) 385
FatI CATG 2 cut(s) 265, 292
FbaI TGATCA 1 cut(s) 327
FokI GGATG 4 cut(s) 62, 170, 218, 268
GsuI CTGGAG 1 cut(s) 293
Hin1II CATG 2 cut(s) 269, 296
HphI GGTGA 2 cut(s) 85, 146
Hpy166II GTNNAC 1 cut(s) 151
Hpy188I TCNGA 2 cut(s) 128, 417
Hpy188III TCNNGA 1 cut(s) 293
Hpy8I GTNNAC 1 cut(s) 151
HpyAV CCTTC 1 cut(s) 299
HpyCH4V TGCA 3 cut(s) 151, 269, 412
HpyF10VI GCNNNNNNNGC 1 cut(s) 275
HpyF3I CTNAG 1 cut(s) 125
Hsp92II CATG 2 cut(s) 269, 296
Ksp22I TGATCA 1 cut(s) 327
Kzo9I GATC 3 cut(s) 136, 175, 327
LpnPI CCDG 2 cut(s) 124, 257
LweI GCATC 1 cut(s) 421
MalI GATC 3 cut(s) 138, 177, 329
MboI GATC 3 cut(s) 136, 175, 327
MboII GAAGA 2 cut(s) 29, 130
MhlI GDGCHC 1 cut(s) 153
MluCI AATT 5 cut(s) 91, 250, 257, 301, 351
MnlI CCTC 5 cut(s) 40, 49, 196, 268, 331
MseI TTAA 2 cut(s) 27, 254
MslI CAYNNNNRTG 2 cut(s) 156, 291
MwoI GCNNNNNNNGC 1 cut(s) 275
NdeII GATC 3 cut(s) 136, 175, 327
NlaIII CATG 2 cut(s) 269, 296
NlaIV GGNNCC 1 cut(s) 342
PagI TCATGA 1 cut(s) 292
PflMI CCANNNNNTGG 1 cut(s) 271
PpuMI RGGWCCY 1 cut(s) 340
Psp5II RGGWCCY 1 cut(s) 340
PspN4I GGNNCC 1 cut(s) 342
PspPI GGNCC 1 cut(s) 340
PspPPI RGGWCCY 1 cut(s) 340
RsaI GTAC 1 cut(s) 164
RsaNI GTAC 1 cut(s) 163
RseI CAYNNNNRTG 2 cut(s) 156, 291
SaqAI TTAA 2 cut(s) 27, 254
Sau3AI GATC 3 cut(s) 136, 175, 327
Sau96I GGNCC 1 cut(s) 340
ScaI AGTACT 1 cut(s) 164
SduI GDGCHC 1 cut(s) 153
SetI ASST 6 cut(s) 75, 126, 150, 200, 237, 291
SfaNI GCATC 1 cut(s) 421
SinI GGWCC 1 cut(s) 340
SmiMI CAYNNNNRTG 2 cut(s) 156, 291
Sse9I AATT 5 cut(s) 91, 250, 257, 301, 351
StyI CCWWGG 1 cut(s) 306
TaqI TCGA 1 cut(s) 67
TasI AATT 5 cut(s) 91, 250, 257, 301, 351
TatI WGTACW 1 cut(s) 162
Tru1I TTAA 2 cut(s) 27, 254
Tru9I TTAA 2 cut(s) 27, 254
TscAI CASTG 2 cut(s) 276, 330
TspDTI ATGAA 7 cut(s) 91, 180, 245, 281, 312, 351, 437
TspRI CASTG 2 cut(s) 276, 330
Van91I CCANNNNNTGG 1 cut(s) 271
VneI GTGCAC 1 cut(s) 149
VpaK11BI GGWCC 1 cut(s) 340
XapI RAATTY 3 cut(s) 250, 301, 351
ZrmI AGTACT 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.