Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001128

Physical Location & Seq

Genomic Coordinates Forward (+)

1427298 .. 1435361

Gene Structure 8064 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0008600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2325 bp

ATGGCCCAGAGTAATTGGGAAGCAGATAAGATGCTTGATGTGTACATTTACGATTATCTAATGAAGAAGGAATTGCATGCCACTGCTAAGTCTTTCATGACCGAAGGGAAGGTTGCGCCCGATCCAGTAGCCATTGATGCACCTGGAGGGTTTCTTTTCGAATGGTGGTCTGTCTTCTGGGACATTTTTATTGCGAGGACAAATGATAAACATTCCGAGTCTGCGGCAGTTTATATAGAGGCACAACAAATTAAAACAAAAGAGCAACAGCAGCTGCAAATGCAGCAGTTGCAACTTATGCGCCAAGCTCAGTTGCAAAGAAATCCTACTAATCCTCCCCTTGGTGGTCCACTAAATTCACTAAGTTCTGAAGGAATGCTTGGGCAATCTACTACTAGTGCATTGGCTGCAAAAATGTATGAGGAACGTATGAAACACCCCAATCAAATAGATTCAGAGACATCCCAACCACTCCTCGATGCTAGAGTGGCCCTGCTGAAATCAACAACAAACCATCCTGGTCAGTTGGTTCAAGGAAACCCTGGTAGTGGTAATGCGGCATTACAACAAATCCAAGCTCGAAGTCAACAGACTGCTGACATAAAGAGTGAAGTTAACATGGTTGCCTCTCAGAGATCTTTGCCTGTGGATTCTTCAATTTATGCACAAGGAATGATGCAGCCAAGACCAGGAATAGGAAATGCAGGTTTGAACCCAGGAGTCGGTGGTCTTCCATTAAAGGGATGGCCCTTAACAGGCATCGACCAAATGCGGCCAGGTTTAGGTGCACAAGTTCAAAAACCTTTCTTGCAAGGTGCAACACAGTTTCAGATCCTCTCACAGCAACAACAACAGCTTTTAGCACAGGTTCAGACTCAAGGCAATGTTGGTAGCACGCCTGGCTATGGAGATATGAGGGGATTGCCCAGGGGAAATTTAAATTCTAAAGATGGCCAATCTATCACAAACAATGGATCTCTAGGTTCTCCTATGCAAACAACTTCGCAGATAAACATGCCACAGATGCAACACTCTTCTTCTCAACAACAGGATCCTTTGCAGCCTCAGCAAGTACAGCAGAATAACCGCAAAAGGAAAGGGCCTTCATCCTCTGGAGCTGCTAACAGTACCGGTACAGGAAATACAGTTGGTCCTTCATCTAATTCCCAACCATCAACTCCATCCACTCATACACCTGGAGACGGAATTGCTATGGCTGGAAATTTTCCGAATGCTAGCAACGTTCCGAAAAGTTTGATGATGTATGGCACGGATGGAACAGGTGGCCTTGCATCATCCACAAATCAGCTGGAAGACATTGACCAATTTGGAGATGTTGGTTCCCTAGAGGACAATGTGGAATCCTTTTTGTCACATGATGATGGAGATGGAAGGGATTTGTTTGGTACATTGAACCGGAACCCTGCACATTCCACAGAAGCTTCAAAGGATTTTTCCTTCAAAGAAGTCGGTTCAATTTGTAAAAGTAGTAGCAAAGTTGTCTGCTGTCACTTCTCTTCAGATGGAAAATTATTGGCCAGTGCTGGACATGACAAGAAGGTTGTTATTTGGAATATGGAAACACTACAGACTGAAAGCACACCCGAGGATCACAGCCTGATAATTACTGATGTTCGATTTAGACCAAATTCAACTCAGTTGGCAACTTCTTCATTTGACACAACTGTGCGACTTTGGGATGCTGCTGAACCAAGCTATTGTTTACATACATATAAAGGACATACCTCACATGTAAGGTCACTTGATTTCCACCCTAAGAAGACTGACCTTTTCTGCTCATGTGACACGAACAATGAGATTCGCTTTTGGAATATTAATCAGTATTCGTGCATTCGTGTTTCTAAGGGAGGTTCTTCACAGGTGAGGTTCCAGCCAAGAATTGGACAATATATGGCTGCAGCATCTGGGAATGTTGTGTCAATATTCGATGCTGAGAGTGATAGGCAGACACATTCACTGCAGGGCCACTCCACAGAGGTGCACTCTCTTTGTTGGGATACAAATGGAGATTATTTGGCTTCAGTCAGTCAAGAGTCAGTCAGAGTGTGGTCATTATCCTCTGGGAAGTGCATTCACGAGCTCAGTTCTAGTGGAAACATGTTCCATTCTTGTGTTTTCCATCCAAGCTACTCCACTCTCTTGGTCATCGGAGGCTACCAGTCAATGGAGCTCTGGAACATGGCTGAGAACAAGTGTATGACGGTTGCTGCTCATGACTGTGTAATATCAGCTTTGGCACAGTCACCAGTTACAAGGATGGTCGCTTCAGCCAGTCATGATAAATCCGTTAAAATCTGGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004012 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006900 GO:0006996 GO:0008150 GO:0009987 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031984 GO:0033036 GO:0034204 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045332 GO:0048193 GO:0048194 GO:0051179 GO:0051234 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0071944 GO:0097035 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase E1-E2_ATPase PhoLip_ATPase_C PhoLip_ATPase_N

Protein Analysis

774

Amino Acids

84.18

Weight (kDa)

6.22

Isoelectric Point (pI)

40.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LisH	PF08513	10 - 36	2.3e-06	LisH
Beta-prop_WDR3_2nd	PF25172	483 - 628	6.6e-13	WDR3 second beta-propeller domain
Beta-prop_CAF1B_HIR1	PF24105	485 - 618	4.1e-08	CAF1B/HIR1 beta-propeller domain
WD40_MABP1-WDR62_2nd	PF24782	487 - 692	5.8e-13	MABP1/WDR62 second WD40 domain
EIF3I	PF24805	488 - 569	4.7e-06	EIF3I
Beta-prop_WDR36-Utp21_2nd	PF25168	488 - 594	6.2e-08	WDR36/Utp21 second beta-propeller domain
WD40_WDHD1_1st	PF24817	488 - 571	3.6e-12	WDHD1 first WD40 domain
Beta-prop_TEP1_2nd	PF25047	489 - 589	3.6e-10	TEP-1 second beta-propeller
WD40_Gbeta	PF25391	490 - 624	2e-10	G protein beta WD-40 repeat protein
Beta-prop_EML_2	PF23414	492 - 616	2.1e-15	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR5	PF25175	496 - 620	3e-27	WDR5 beta-propeller domain
WD40	PF00400	496 - 525	4.7e-06	WD domain, G-beta repeat
Beta-prop_THOC3	PF25174	497 - 571	7.7e-15	THOC3 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	497 - 612	4e-21	WDR3 first beta-propeller domain
WD40_Prp19	PF24814	498 - 733	4.2e-38	Prp19 WD40 domain
Beta-prop_EML	PF23409	500 - 617	6e-07	Echinoderm microtubule-associated protein first beta-propeller
WD40_CDC20-Fz	PF24807	529 - 622	1.8e-12	CDC20/Fizzy WD40 domain
WD40	PF00400	534 - 567	4.8e-06	WD domain, G-beta repeat
Beta-prop_THOC3	PF25174	538 - 774	2.3e-37	THOC3 beta-propeller domain
WD40_WDHD1_1st	PF24817	575 - 722	1.4e-14	WDHD1 first WD40 domain
Beta-prop_WDR36-Utp21_2nd	PF25168	579 - 702	2.1e-08	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_1st	PF25173	601 - 774	2e-21	WDR3 first beta-propeller domain
Beta-prop_WDR36-Utp21_1st	PF25171	604 - 771	9.9e-14	WDR36/Utp21 first beta-propeller
Beta-prop_WDR5	PF25175	624 - 773	7.1e-24	WDR5 beta-propeller domain
Beta-prop_WDR19_1st	PF23389	628 - 772	5.9e-06	WDR19 first beta-propeller
WD40_WDHD1_1st	PF24817	635 - 774	3.6e-12	WDHD1 first WD40 domain
WD40_CDC20-Fz	PF24807	636 - 773	5.1e-12	CDC20/Fizzy WD40 domain
Beta-prop_EML	PF23409	644 - 739	3.7e-06	Echinoderm microtubule-associated protein first beta-propeller
WD40	PF00400	656 - 691	4.1e-06	WD domain, G-beta repeat
Beta-prop_WDR3_2nd	PF25172	666 - 774	1.1e-10	WDR3 second beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66055 AT5G66055
fragaria_vesca	FvH4_1g10990 FvH4_1g10990
malus_domestica	MD15G1236900.v1.1
prunus_persica	Prupe.7G175600_v2.0.a1
pyrus_communis	pycom15g21070
rosa_chinensis	RchiOBHm_Chr1g0316921 RchiOBHm_Chr1g0316981 RchiOBHm_Chr2g0098251 RchiOBHm_Chr2g0145411 RchiOBHm_Chr4g0390291 RchiOBHm_Chr5g0073551
rosa_laevigata	RLG00000001656 RLG00000016779 RLG00000027817 RLG00000030637 RLG00000032089
rosa_multiflora	Rmu_co8173478.1_g000001 Rmu_sc0000104.1_g000031 Rmu_sc0000712.1_g000024 Rmu_sc0001298.1_g000058 Rmu_sc0002048.1_g000015 Rmu_sc0002398.1_g000019 Rmu_sc0004138.1_g000005 Rmu_sc0007472.1_g000006 Rmu_sc0009922.1_g000006
rosa_roxburghii	Rroxscaffold_2G00094620 Rroxscaffold_2G00144120
rosa_rugosa	Rorug02G0071600 Rorug02G0547800 Rorug04G0008500 Rorug04G0008600 Rorug04G0008600 Rorug04G0208000 Rorug05G0455100.1
rosa_samantha	Rh1AG024600 Rh1AG024700 Rh1CG022000 Rh1CG022900 Rh1DG021700 Rh2AG118600 Rh2BG121700 Rh2BG300700 Rh2BG456300 Rh2CG123300 Rh2CG279400 Rh2DG123300 Rh2DG466200 Rh4AG245100 Rh4BG023700 Rh4BG025500 Rh4BG250300 Rh4DG100600 Rh5DG257900 Rh6AG184700
rosa_wichuraiana	Rw1G001670 Rw2G009310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	695
AccB7I	CCANNNNNTGG	2 cut(s)	1901, 2185
AciI	CCGC	4 cut(s)	224, 557, 772, 1087
AclI	AACGTT	1 cut(s)	1242
AclWI	GGATC	6 cut(s)	116, 826, 982, 1046, 1059, 1617
AcoI	YGGCCR	3 cut(s)	773, 952, 1536
AcsI	RAATTY	5 cut(s)	355, 934, 940, 1222, 1648
AcuI	CTGAAG	4 cut(s)	390, 1503, 2025, 2271
AfaI	GTAC	5 cut(s)	44, 1074, 1129, 1135, 1408
AflIII	ACRYGT	2 cut(s)	1750, 2118
AgeI	ACCGGT	1 cut(s)	1130
AgsI	TTSAA	9 cut(s)	533, 657, 712, 797, 1414, 1446, 1462, 1476, 1653
AhlI	ACTAGT	1 cut(s)	395
AjnI	CCWGG	9 cut(s)	142, 517, 541, 688, 715, 775, 898, 926, 1195
AjuI	GAANNNNNNNTTGG	2 cut(s)	363, 395
AleI	CACNNNNGTG	2 cut(s)	1685, 1997
Alw21I	GWGCWC	4 cut(s)	790, 2004, 2103, 2193
Alw26I	GTCTC	2 cut(s)	452, 1194
Alw44I	GTGCAC	2 cut(s)	786, 2000
AlwI	GGATC	6 cut(s)	116, 826, 982, 1046, 1059, 1617
AlwNI	CAGNNNCTG	2 cut(s)	274, 1925
Ama87I	CYCGRG	1 cut(s)	1604
AoxI	GGCC	9 cut(s)	3, 489, 746, 773, 952, 1100, 1285, 1536, 1984
ApaLI	GTGCAC	2 cut(s)	786, 2000
ApoI	RAATTY	5 cut(s)	355, 934, 940, 1222, 1648
AseI	ATTAAT	1 cut(s)	1836
AsiGI	ACCGGT	1 cut(s)	1130
AspLEI	GCGC	2 cut(s)	118, 303
AspS9I	GGNCC	7 cut(s)	4, 347, 490, 747, 1100, 1151, 1984
AsuHPI	GGTGA	2 cut(s)	1894, 2256
AsuII	TTCGAA	1 cut(s)	159
AsuNHI	GCTAGC	1 cut(s)	1235
AvaI	CYCGRG	1 cut(s)	1604
AvaII	GGWCC	2 cut(s)	347, 1151
BaeGI	GKGCMC	2 cut(s)	790, 2004
BalI	TGGCCA	2 cut(s)	954, 1538
BamHI	GGATCC	1 cut(s)	1051
BanII	GRGCYC	2 cut(s)	2103, 2193
BauI	CACGAG	1 cut(s)	2096
BbsI	GAAGAC	4 cut(s)	166, 722, 1320, 1787
Bbv12I	GWGCWC	4 cut(s)	790, 2004, 2103, 2193
BbvCI	CCTCAGC	1 cut(s)	1065
BciT130I	CCWGG	9 cut(s)	144, 519, 543, 690, 717, 777, 900, 928, 1197
BciVI	GTATCC	1 cut(s)	2011
BcoDI	GTCTC	2 cut(s)	452, 1194
BcuI	ACTAGT	1 cut(s)	395
BfaI	CTAG	6 cut(s)	396, 483, 980, 1236, 1346, 2109
BfmI	CTRYAG	3 cut(s)	1586, 1917, 1979
BfuAI	ACCTGC	1 cut(s)	695
BfuI	GTATCC	1 cut(s)	2011
BglII	AGATCT	1 cut(s)	635
Bme1390I	CCNGG	9 cut(s)	144, 519, 543, 690, 717, 777, 900, 928, 1197
Bme18I	GGWCC	2 cut(s)	347, 1151
BmeT110I	CYCGRG	1 cut(s)	1604
BmgT120I	GGNCC	7 cut(s)	4, 347, 490, 747, 1100, 1151, 1984
BmiI	GGNNCC	4 cut(s)	1053, 1342, 1421, 1889
BmrFI	CCNGG	9 cut(s)	144, 519, 543, 690, 717, 777, 900, 928, 1197
BmtI	GCTAGC	1 cut(s)	1239
BpiI	GAAGAC	4 cut(s)	166, 722, 1320, 1787
BplI	GAGNNNNNCTC	2 cut(s)	1988, 2020
BpmI	CTGGAG	3 cut(s)	165, 1134, 1218
Bpu10I	CCTNAGC	1 cut(s)	1065
Bpu14I	TTCGAA	1 cut(s)	159
BpuEI	CTTGAG	1 cut(s)	861
BsaJI	CCNNGG	6 cut(s)	340, 541, 715, 926, 927, 1605
BsaWI	WCCGGW	2 cut(s)	1130, 1416
BsaXI	ACNNNNNCTCC	2 cut(s)	319, 349
Bse118I	RCCGGY	1 cut(s)	1130
Bse1I	ACTGG	5 cut(s)	125, 1539, 2179, 2267, 2292
Bse3DI	GCAATG	1 cut(s)	889
BseBI	CCWGG	9 cut(s)	144, 519, 543, 690, 717, 777, 900, 928, 1197
BseDI	CCNNGG	6 cut(s)	340, 541, 715, 926, 927, 1605
BseMI	GCAATG	1 cut(s)	889
BseMII	CTCAG	7 cut(s)	323, 644, 1079, 1670, 1944, 2116, 2196
BseNI	ACTGG	5 cut(s)	125, 1539, 2179, 2267, 2292
BseRI	GAGGAG	1 cut(s)	464
BseSI	GKGCMC	2 cut(s)	790, 2004
BsgI	GTGCAG	1 cut(s)	1410
BshFI	GGCC	9 cut(s)	5, 491, 748, 775, 954, 1102, 1287, 1538, 1986
BshTI	ACCGGT	1 cut(s)	1130
BsiHKAI	GWGCWC	4 cut(s)	790, 2004, 2103, 2193
BsiHKCI	CYCGRG	1 cut(s)	1604
BsiSI	CCGG	2 cut(s)	1131, 1417
BslFI	GGGAC	1 cut(s)	194
BsmAI	GTCTC	2 cut(s)	452, 1194
BsmBI	CGTCTC	1 cut(s)	1194
BsmFI	GGGAC	1 cut(s)	194
BsmI	GAATGC	4 cut(s)	381, 1237, 1851, 2091
BsnI	GGCC	9 cut(s)	5, 491, 748, 775, 954, 1102, 1287, 1538, 1986
BsoBI	CYCGRG	1 cut(s)	1604
Bsp119I	TTCGAA	1 cut(s)	159
Bsp1286I	GDGCHC	4 cut(s)	790, 2004, 2103, 2193
Bsp1407I	TGTACA	1 cut(s)	42
Bsp143I	GATC	6 cut(s)	121, 635, 831, 974, 1051, 1609
BspACI	CCGC	4 cut(s)	224, 557, 772, 1087
BspANI	GGCC	9 cut(s)	5, 491, 748, 775, 954, 1102, 1287, 1538, 1986
BspCNI	CTCAG	7 cut(s)	322, 643, 1078, 1669, 1945, 2115, 2197
BspHI	TCATGA	3 cut(s)	96, 2233, 2296
BspLI	GGNNCC	4 cut(s)	1053, 1342, 1421, 1889
BspMAI	CTGCAG	2 cut(s)	1921, 1983
BspMI	ACCTGC	1 cut(s)	695
BspOI	GCTAGC	1 cut(s)	1239
BspPI	GGATC	6 cut(s)	116, 826, 982, 1046, 1059, 1617
BspT104I	TTCGAA	1 cut(s)	159
BsrDI	GCAATG	1 cut(s)	889
BsrFI	RCCGGY	1 cut(s)	1130
BsrGI	TGTACA	1 cut(s)	42
BsrI	ACTGG	5 cut(s)	125, 1539, 2179, 2267, 2292
BssAI	RCCGGY	1 cut(s)	1130
BssECI	CCNNGG	6 cut(s)	340, 541, 715, 926, 927, 1605
BssMI	GATC	6 cut(s)	121, 635, 831, 974, 1051, 1609
BssSI	CACGAG	1 cut(s)	2096
BssT1I	CCWWGG	1 cut(s)	340
Bst2BI	CACGAG	1 cut(s)	2096
Bst2UI	CCWGG	9 cut(s)	144, 519, 543, 690, 717, 777, 900, 928, 1197
Bst4CI	ACNGT	7 cut(s)	825, 1127, 1147, 1687, 2224, 2240, 2262
Bst6I	CTCTTC	2 cut(s)	1039, 1522
BstAPI	GCANNNNNTGC	3 cut(s)	289, 298, 407
BstAUI	TGTACA	1 cut(s)	42
BstBI	TTCGAA	1 cut(s)	159
BstC8I	GCNNGC	3 cut(s)	78, 896, 1237
BstHHI	GCGC	2 cut(s)	118, 303
BstKTI	GATC	6 cut(s)	124, 638, 834, 977, 1054, 1612
BstMAI	GTCTC	2 cut(s)	452, 1194
BstMBI	GATC	6 cut(s)	121, 635, 831, 974, 1051, 1609
BstNI	CCWGG	9 cut(s)	144, 519, 543, 690, 717, 777, 900, 928, 1197
BstNSI	RCATGY	4 cut(s)	80, 1018, 1754, 2122
BstSCI	CCNGG	9 cut(s)	142, 517, 541, 688, 715, 775, 898, 926, 1195
BstSFI	CTRYAG	3 cut(s)	1586, 1917, 1979
BstSLI	GKGCMC	2 cut(s)	790, 2004
BstV2I	GAAGAC	4 cut(s)	166, 722, 1320, 1787
BstX2I	RGATCY	4 cut(s)	635, 831, 974, 1051
BstXI	CCANNNNNNTGG	1 cut(s)	2161
BstYI	RGATCY	4 cut(s)	635, 831, 974, 1051
BsuI	GTATCC	1 cut(s)	2011
BsuRI	GGCC	9 cut(s)	5, 491, 748, 775, 954, 1102, 1287, 1538, 1986
BtsI	GCAGTG	2 cut(s)	81, 1976
BtsIMutI	CAGTG	3 cut(s)	81, 1546, 1976
BveI	ACCTGC	1 cut(s)	695
Cac8I	GCNNGC	3 cut(s)	78, 896, 1237
CaiI	CAGNNNCTG	2 cut(s)	274, 1925
CciI	TCATGA	3 cut(s)	96, 2233, 2296
CfoI	GCGC	2 cut(s)	118, 303
Cfr10I	RCCGGY	1 cut(s)	1130
Cfr13I	GGNCC	7 cut(s)	4, 347, 490, 747, 1100, 1151, 1984
Csp6I	GTAC	5 cut(s)	43, 1073, 1128, 1134, 1407
CspAI	ACCGGT	1 cut(s)	1130
CviQI	GTAC	5 cut(s)	43, 1073, 1128, 1134, 1407
DpnI	GATC	6 cut(s)	123, 637, 833, 976, 1053, 1611
DpnII	GATC	6 cut(s)	121, 635, 831, 974, 1051, 1609
DraI	TTTAAA	1 cut(s)	939
EaeI	YGGCCR	3 cut(s)	773, 952, 1536
Eam1104I	CTCTTC	2 cut(s)	1039, 1522
EarI	CTCTTC	2 cut(s)	1039, 1522
Ecl136II	GAGCTC	2 cut(s)	2101, 2191
Eco130I	CCWWGG	1 cut(s)	340
Eco24I	GRGCYC	2 cut(s)	2103, 2193
Eco47I	GGWCC	2 cut(s)	347, 1151
Eco53kI	GAGCTC	2 cut(s)	2101, 2191
Eco57I	CTGAAG	4 cut(s)	390, 1503, 2025, 2271
Eco88I	CYCGRG	1 cut(s)	1604
EcoICRI	GAGCTC	2 cut(s)	2101, 2191
EcoO109I	RGGNCCY	1 cut(s)	1100
EcoRII	CCWGG	9 cut(s)	142, 517, 541, 688, 715, 775, 898, 926, 1195
EcoT14I	CCWWGG	1 cut(s)	340
EcoT38I	GRGCYC	2 cut(s)	2103, 2193
ErhI	CCWWGG	1 cut(s)	340
Esp3I	CGTCTC	1 cut(s)	1194
FalI	AAGNNNNNCTT	2 cut(s)	363, 395
FaqI	GGGAC	1 cut(s)	194
FriOI	GRGCYC	2 cut(s)	2103, 2193
FspBI	CTAG	6 cut(s)	396, 483, 980, 1236, 1346, 2109
GlaI	GCGC	2 cut(s)	117, 302
GsuI	CTGGAG	3 cut(s)	165, 1134, 1218
HaeIII	GGCC	9 cut(s)	5, 491, 748, 775, 954, 1102, 1287, 1538, 1986
HapII	CCGG	2 cut(s)	1131, 1417
HhaI	GCGC	2 cut(s)	118, 303
Hin6I	GCGC	2 cut(s)	116, 301
HinP1I	GCGC	2 cut(s)	116, 301
HincII	GTYRAC	2 cut(s)	587, 616
HindII	GTYRAC	2 cut(s)	587, 616
HindIII	AAGCTT	1 cut(s)	1440
HinfI	GANTC	8 cut(s)	218, 452, 650, 720, 874, 1361, 1819, 2054
HpaI	GTTAAC	1 cut(s)	616
HpaII	CCGG	2 cut(s)	1131, 1417
HphI	GGTGA	2 cut(s)	1894, 2256
Hpy166II	GTNNAC	7 cut(s)	43, 350, 587, 616, 788, 1724, 2002
Hpy188III	TCNNGA	8 cut(s)	97, 1113, 2051, 2096, 2194, 2234, 2297, 2317
Hpy8I	GTNNAC	7 cut(s)	43, 350, 587, 616, 788, 1724, 2002
HpyAV	CCTTC	9 cut(s)	61, 98, 103, 365, 1113, 1164, 1386, 1468, 1552
HpyCH4III	ACNGT	7 cut(s)	825, 1127, 1147, 1687, 2224, 2240, 2262
HpyCH4IV	ACGT	2 cut(s)	427, 1242
HpySE526I	ACGT	2 cut(s)	427, 1242
HspAI	GCGC	2 cut(s)	116, 301
KspAI	GTTAAC	1 cut(s)	616
Kzo9I	GATC	6 cut(s)	121, 635, 831, 974, 1051, 1609
LmnI	GCTCC	2 cut(s)	1115, 2188
MaeI	CTAG	6 cut(s)	396, 483, 980, 1236, 1346, 2109
MaeII	ACGT	2 cut(s)	427, 1242
MaeIII	GTNAC	6 cut(s)	1371, 1508, 1758, 1802, 2262, 2269
MalI	GATC	6 cut(s)	123, 637, 833, 976, 1053, 1611
MboI	GATC	6 cut(s)	121, 635, 831, 974, 1051, 1609
MflI	RGATCY	4 cut(s)	635, 831, 974, 1051
MhlI	GDGCHC	4 cut(s)	790, 2004, 2103, 2193
MlsI	TGGCCA	2 cut(s)	954, 1538
MluNI	TGGCCA	2 cut(s)	954, 1538
MlyI	GAGTC	4 cut(s)	227, 729, 868, 2063
Mox20I	TGGCCA	2 cut(s)	954, 1538
MscI	TGGCCA	2 cut(s)	954, 1538
MseI	TTAA	7 cut(s)	252, 615, 737, 752, 938, 1836, 2310
MslI	CAYNNNNRTG	5 cut(s)	1380, 1685, 1997, 2130, 2238
Msp20I	TGGCCA	2 cut(s)	954, 1538
MspA1I	CMGCKG	2 cut(s)	274, 1309
MspI	CCGG	2 cut(s)	1131, 1417
MspR9I	CCNGG	9 cut(s)	144, 519, 543, 690, 717, 777, 900, 928, 1197
Mva1269I	GAATGC	4 cut(s)	381, 1237, 1851, 2091
MvaI	CCWGG	9 cut(s)	144, 519, 543, 690, 717, 777, 900, 928, 1197
NdeII	GATC	6 cut(s)	121, 635, 831, 974, 1051, 1609
NheI	GCTAGC	1 cut(s)	1235
NlaIV	GGNNCC	4 cut(s)	1053, 1342, 1421, 1889
NmuCI	GTSAC	5 cut(s)	1371, 1508, 1758, 1802, 2262
NspI	RCATGY	4 cut(s)	80, 1018, 1754, 2122
NspV	TTCGAA	1 cut(s)	159
OliI	CACNNNNGTG	2 cut(s)	1685, 1997
PaeI	GCATGC	1 cut(s)	80
PagI	TCATGA	3 cut(s)	96, 2233, 2296
PasI	CCCWGGG	1 cut(s)	927
PciI	ACATGT	2 cut(s)	1750, 2118
PctI	GAATGC	4 cut(s)	381, 1237, 1851, 2091
PfeI	GAWTC	4 cut(s)	452, 650, 1361, 1819
PflMI	CCANNNNNTGG	2 cut(s)	1901, 2185
PinAI	ACCGGT	1 cut(s)	1130
PleI	GAGTC	4 cut(s)	226, 728, 868, 2062
PpsI	GAGTC	4 cut(s)	226, 728, 868, 2062
PscI	ACATGT	2 cut(s)	1750, 2118
PshBI	ATTAAT	1 cut(s)	1836
Psp124BI	GAGCTC	2 cut(s)	2103, 2193
Psp1406I	AACGTT	1 cut(s)	1242
Psp6I	CCWGG	9 cut(s)	142, 517, 541, 688, 715, 775, 898, 926, 1195
PspGI	CCWGG	9 cut(s)	142, 517, 541, 688, 715, 775, 898, 926, 1195
PspN4I	GGNNCC	4 cut(s)	1053, 1342, 1421, 1889
PspPI	GGNCC	7 cut(s)	4, 347, 490, 747, 1100, 1151, 1984
PstI	CTGCAG	2 cut(s)	1921, 1983
PstNI	CAGNNNCTG	2 cut(s)	274, 1925
PsuI	RGATCY	4 cut(s)	635, 831, 974, 1051
PvuII	CAGCTG	2 cut(s)	274, 1309
RsaI	GTAC	5 cut(s)	44, 1074, 1129, 1135, 1408
RsaNI	GTAC	5 cut(s)	43, 1073, 1128, 1134, 1407
RseI	CAYNNNNRTG	5 cut(s)	1380, 1685, 1997, 2130, 2238
SacI	GAGCTC	2 cut(s)	2103, 2193
SaqAI	TTAA	7 cut(s)	252, 615, 737, 752, 938, 1836, 2310
Sau3AI	GATC	6 cut(s)	121, 635, 831, 974, 1051, 1609
Sau96I	GGNCC	7 cut(s)	4, 347, 490, 747, 1100, 1151, 1984
SchI	GAGTC	4 cut(s)	227, 729, 868, 2063
ScrFI	CCNGG	9 cut(s)	144, 519, 543, 690, 717, 777, 900, 928, 1197
SduI	GDGCHC	4 cut(s)	790, 2004, 2103, 2193
SfcI	CTRYAG	3 cut(s)	1586, 1917, 1979
SfuI	TTCGAA	1 cut(s)	159
SinI	GGWCC	2 cut(s)	347, 1151
SmiI	ATTTAAAT	1 cut(s)	939
SmiMI	CAYNNNNRTG	5 cut(s)	1380, 1685, 1997, 2130, 2238
SmlI	CTYRAG	1 cut(s)	876
SmoI	CTYRAG	1 cut(s)	876
SpeI	ACTAGT	1 cut(s)	395
SphI	GCATGC	1 cut(s)	80
SsiI	CCGC	4 cut(s)	224, 557, 772, 1087
SspI	AATATT	2 cut(s)	1834, 1944
SspMI	CTAG	6 cut(s)	396, 483, 980, 1236, 1346, 2109
SstI	GAGCTC	2 cut(s)	2103, 2193
StyD4I	CCNGG	9 cut(s)	142, 517, 541, 688, 715, 775, 898, 926, 1195
StyI	CCWWGG	1 cut(s)	340
SwaI	ATTTAAAT	1 cut(s)	939
TaaI	ACNGT	7 cut(s)	825, 1127, 1147, 1687, 2224, 2240, 2262
TaiI	ACGT	2 cut(s)	430, 1245
TaqI	TCGA	6 cut(s)	159, 477, 580, 762, 1636, 1947
TaqII	GACCGA	1 cut(s)	116
TatI	WGTACW	2 cut(s)	42, 1072
TauI	GCSGC	3 cut(s)	227, 560, 775
TfiI	GAWTC	4 cut(s)	452, 650, 1361, 1819
Tru1I	TTAA	7 cut(s)	252, 615, 737, 752, 938, 1836, 2310
Tru9I	TTAA	7 cut(s)	252, 615, 737, 752, 938, 1836, 2310
TscAI	CASTG	3 cut(s)	88, 1546, 1983
TseFI	GTSAC	5 cut(s)	1371, 1508, 1758, 1802, 2262
Tsp45I	GTSAC	5 cut(s)	1371, 1508, 1758, 1802, 2262
TspDTI	ATGAA	6 cut(s)	77, 85, 446, 1095, 1146, 1662
TspGWI	ACGGA	3 cut(s)	1218, 1286, 2296
TspRI	CASTG	3 cut(s)	88, 1546, 1983
Van91I	CCANNNNNTGG	2 cut(s)	1901, 2185
VneI	GTGCAC	2 cut(s)	786, 2000
VpaK11BI	GGWCC	2 cut(s)	347, 1151
VspI	ATTAAT	1 cut(s)	1836
XapI	RAATTY	5 cut(s)	355, 934, 940, 1222, 1648
XceI	RCATGY	4 cut(s)	80, 1018, 1754, 2122
XcmI	CCANNNNNNNNNTGG	3 cut(s)	741, 1306, 1898
XspI	CTAG	6 cut(s)	396, 483, 980, 1236, 1346, 2109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.