Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001128

Physical Location & Seq

Genomic Coordinates Forward (+)

63083425 .. 63084425

Gene Structure 1001 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51527

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGATTTGTTGGGGTTTACTTGGTTTAAAGCTTACATATTTCATTTTCCCCCAGTTCCCGCAACAGAAAAATGACTATGATTGTGGTCTCTTTGTACTCTTGTTTATGGAATGCTTTATAGAAGAGGCCTTTAAAAGGCTGAAAAAGAAAGAGGATGTGGAGGTAAATAATCGAAAGGTGAAAGTGTATGGTAGGAATTATACATTCATTGAGACCAGATGGAAGAAGCTCAGAGTTGGTGAACTTGTCAAGGTGCACAAGGATGAGTACTTTCTTGTTGATCTGCTTTTGCTTTCATCAAGCTATGAGGATGGCATTTGCTATGTGGAAACTATGAACCTTGATGGAGAAACAAATTTAAAATTGAACAATGCACTGGAGGTGACATCCCATCTTCATGATGAAAATTCCTTGGAAAGATTTAGGGCAGTGATCAAGTGTGAGGACCCAAATAAAATTCTATATTCATTTGTTGGGACTTTGTTCTATAACGGCAGAGAACACCCACTTTCCTTGCAACAGATGCTGAAAAATACAGAATATGTCCATGGATTTGTTGTTTTCACTGGGCATGACACAGAAGTGCGGCAAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004012 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006900 GO:0006996 GO:0008150 GO:0009987 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031984 GO:0033036 GO:0034204 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045332 GO:0048193 GO:0048194 GO:0051179 GO:0051234 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0071944 GO:0097035 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase E1-E2_ATPase PhoLip_ATPase_C PhoLip_ATPase_N

Protein Analysis

198

Amino Acids

23.37

Weight (kDa)

6.09

Isoelectric Point (pI)

33.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C48	PF02902	14 - 53	4.7e-08	Ulp1 protease family, C-terminal catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66055 AT5G66055
fragaria_vesca	FvH4_1g10990 FvH4_1g10990
malus_domestica	MD15G1236900.v1.1
prunus_persica	Prupe.7G175600_v2.0.a1
pyrus_communis	pycom15g21070
rosa_chinensis	RchiOBHm_Chr1g0316921 RchiOBHm_Chr1g0316981 RchiOBHm_Chr2g0098251 RchiOBHm_Chr2g0145411 RchiOBHm_Chr4g0390291 RchiOBHm_Chr5g0073551
rosa_laevigata	RLG00000001656 RLG00000016779 RLG00000027817 RLG00000030637 RLG00000032089
rosa_multiflora	Rmu_co8173478.1_g000001 Rmu_sc0000104.1_g000031 Rmu_sc0000712.1_g000024 Rmu_sc0001298.1_g000058 Rmu_sc0002048.1_g000015 Rmu_sc0002398.1_g000019 Rmu_sc0004138.1_g000005 Rmu_sc0007472.1_g000006 Rmu_sc0009922.1_g000006
rosa_roxburghii	Rroxscaffold_2G00094620 Rroxscaffold_2G00144120
rosa_rugosa	Rorug02G0071600 Rorug02G0547800 Rorug04G0008500 Rorug04G0008600 Rorug04G0008600 Rorug04G0208000 Rorug05G0455100.1
rosa_samantha	Rh1AG024600 Rh1AG024700 Rh1CG022000 Rh1CG022900 Rh1DG021700 Rh2AG118600 Rh2BG121700 Rh2BG300700 Rh2BG456300 Rh2CG123300 Rh2CG279400 Rh2DG123300 Rh2DG466200 Rh4AG245100 Rh4BG023700 Rh4BG025500 Rh4BG250300 Rh4DG100600 Rh5DG257900 Rh6AG184700
rosa_wichuraiana	Rw1G001670 Rw2G009310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	59, 586
AcsI	RAATTY	3 cut(s)	355, 406, 456
AfaI	GTAC	2 cut(s)	96, 269
AfiI	CCNNNNNNNGG	1 cut(s)	135
AgsI	TTSAA	1 cut(s)	367
AleI	CACNNNNGTG	1 cut(s)	581
AluBI	AGCT	3 cut(s)	31, 229, 303
AluI	AGCT	3 cut(s)	31, 229, 303
Alw21I	GWGCWC	1 cut(s)	258
Alw26I	GTCTC	2 cut(s)	92, 206
Alw44I	GTGCAC	1 cut(s)	254
AlwNI	CAGNNNCTG	1 cut(s)	526
AoxI	GGCC	1 cut(s)	126
ApaLI	GTGCAC	1 cut(s)	254
ApoI	RAATTY	3 cut(s)	355, 406, 456
AspS9I	GGNCC	1 cut(s)	445
AsuHPI	GGTGA	3 cut(s)	190, 251, 394
AvaII	GGWCC	1 cut(s)	445
BaeGI	GKGCMC	1 cut(s)	258
Bbv12I	GWGCWC	1 cut(s)	258
BccI	CCATC	4 cut(s)	213, 305, 338, 399
BceAI	ACGGC	1 cut(s)	508
BclI	TGATCA	1 cut(s)	432
BcoDI	GTCTC	2 cut(s)	92, 206
BisI	GCNGC	1 cut(s)	587
BlsI	GCNGC	1 cut(s)	588
BmcAI	AGTACT	1 cut(s)	269
Bme18I	GGWCC	1 cut(s)	445
BmgT120I	GGNCC	1 cut(s)	445
BmiI	GGNNCC	1 cut(s)	447
BmrI	ACTGGG	2 cut(s)	46, 576
BmsI	GCATC	1 cut(s)	513
BmuI	ACTGGG	2 cut(s)	46, 576
BpmI	CTGGAG	1 cut(s)	398
BsaI	GGTCTC	2 cut(s)	92, 206
BsaJI	CCNNGG	2 cut(s)	411, 547
Bsc4I	CCNNNNNNNGG	1 cut(s)	135
Bse1I	ACTGG	3 cut(s)	52, 381, 571
BseDI	CCNNGG	2 cut(s)	411, 547
BseGI	GGATG	4 cut(s)	160, 268, 316, 386
BseLI	CCNNNNNNNGG	1 cut(s)	135
BseMII	CTCAG	1 cut(s)	244
BseNI	ACTGG	3 cut(s)	52, 381, 571
BseSI	GKGCMC	1 cut(s)	258
BshFI	GGCC	1 cut(s)	128
BsiHKAI	GWGCWC	1 cut(s)	258
BslFI	GGGAC	1 cut(s)	490
BslI	CCNNNNNNNGG	1 cut(s)	135
BsmAI	GTCTC	2 cut(s)	92, 206
BsmFI	GGGAC	1 cut(s)	490
BsmI	GAATGC	1 cut(s)	116
BsnI	GGCC	1 cut(s)	128
Bso31I	GGTCTC	2 cut(s)	92, 206
Bsp1286I	GDGCHC	1 cut(s)	258
Bsp143I	GATC	2 cut(s)	280, 432
Bsp19I	CCATGG	1 cut(s)	547
BspACI	CCGC	2 cut(s)	59, 586
BspANI	GGCC	1 cut(s)	128
BspCNI	CTCAG	1 cut(s)	243
BspHI	TCATGA	1 cut(s)	397
BspLI	GGNNCC	1 cut(s)	447
BspTNI	GGTCTC	2 cut(s)	92, 206
BsrI	ACTGG	3 cut(s)	52, 381, 571
BssECI	CCNNGG	2 cut(s)	411, 547
BssMI	GATC	2 cut(s)	280, 432
BssT1I	CCWWGG	2 cut(s)	411, 547
Bst6I	CTCTTC	1 cut(s)	117
BstAPI	GCANNNNNTGC	1 cut(s)	523
BstDEI	CTNAG	1 cut(s)	230
BstDSI	CCRYGG	1 cut(s)	547
BstENI	CCTNNNNNAGG	1 cut(s)	133
BstF5I	GGATG	4 cut(s)	160, 268, 316, 386
BstKTI	GATC	2 cut(s)	283, 435
BstMAI	GTCTC	2 cut(s)	92, 206
BstMBI	GATC	2 cut(s)	280, 432
BstMWI	GCNNNNNNNGC	1 cut(s)	523
BstSLI	GKGCMC	1 cut(s)	258
BsuRI	GGCC	1 cut(s)	128
BtgI	CCRYGG	1 cut(s)	547
BtsCI	GGATG	4 cut(s)	160, 268, 316, 386
BtsI	GCAGTG	1 cut(s)	435
BtsIMutI	CAGTG	3 cut(s)	374, 435, 564
CaiI	CAGNNNCTG	1 cut(s)	526
CciI	TCATGA	1 cut(s)	397
Cfr13I	GGNCC	1 cut(s)	445
Csp6I	GTAC	2 cut(s)	95, 268
CspCI	CAANNNNNGTGG	2 cut(s)	495, 530
CviAII	CATG	3 cut(s)	398, 548, 572
CviJI	RGCY	5 cut(s)	31, 128, 139, 229, 303
CviKI_1	RGCY	5 cut(s)	31, 128, 139, 229, 303
CviQI	GTAC	2 cut(s)	95, 268
DdeI	CTNAG	1 cut(s)	230
DpnI	GATC	2 cut(s)	282, 434
DpnII	GATC	2 cut(s)	280, 432
DraI	TTTAAA	3 cut(s)	27, 133, 360
Eam1104I	CTCTTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	117
Eco130I	CCWWGG	2 cut(s)	411, 547
Eco147I	AGGCCT	1 cut(s)	128
Eco31I	GGTCTC	2 cut(s)	92, 206
Eco47I	GGWCC	1 cut(s)	445
EcoNI	CCTNNNNNAGG	1 cut(s)	133
EcoO109I	RGGNCCY	1 cut(s)	445
EcoT14I	CCWWGG	2 cut(s)	411, 547
ErhI	CCWWGG	2 cut(s)	411, 547
FaeI	CATG	3 cut(s)	401, 551, 575
FaqI	GGGAC	1 cut(s)	490
FatI	CATG	3 cut(s)	397, 547, 571
FauI	CCCGC	1 cut(s)	66
FbaI	TGATCA	1 cut(s)	432
Fnu4HI	GCNGC	1 cut(s)	587
FokI	GGATG	4 cut(s)	167, 275, 323, 373
Fsp4HI	GCNGC	1 cut(s)	587
GluI	GCNGC	1 cut(s)	587
GsuI	CTGGAG	1 cut(s)	398
HaeIII	GGCC	1 cut(s)	128
Hin1II	CATG	3 cut(s)	401, 551, 575
HindIII	AAGCTT	1 cut(s)	29
HphI	GGTGA	3 cut(s)	190, 251, 394
Hpy166II	GTNNAC	3 cut(s)	17, 242, 256
Hpy188I	TCNGA	1 cut(s)	233
Hpy188III	TCNNGA	1 cut(s)	398
Hpy8I	GTNNAC	3 cut(s)	17, 242, 256
HpyCH4V	TGCA	3 cut(s)	256, 374, 517
HpyF10VI	GCNNNNNNNGC	1 cut(s)	523
HpyF3I	CTNAG	1 cut(s)	230
Hsp92II	CATG	3 cut(s)	401, 551, 575
Ksp22I	TGATCA	1 cut(s)	432
Kzo9I	GATC	2 cut(s)	280, 432
LpnPI	CCDG	4 cut(s)	65, 229, 362, 552
LweI	GCATC	1 cut(s)	513
MaeIII	GTNAC	1 cut(s)	382
MalI	GATC	2 cut(s)	282, 434
MboI	GATC	2 cut(s)	280, 432
MboII	GAAGA	3 cut(s)	134, 235, 386
MhlI	GDGCHC	1 cut(s)	258
MluCI	AATT	5 cut(s)	196, 355, 362, 406, 456
MnlI	CCTC	6 cut(s)	118, 145, 154, 301, 373, 436
MseI	TTAA	3 cut(s)	26, 132, 359
MslI	CAYNNNNRTG	3 cut(s)	261, 396, 581
Mva1269I	GAATGC	1 cut(s)	116
MwoI	GCNNNNNNNGC	1 cut(s)	523
NcoI	CCATGG	1 cut(s)	547
NdeII	GATC	2 cut(s)	280, 432
NlaIII	CATG	3 cut(s)	401, 551, 575
NlaIV	GGNNCC	1 cut(s)	447
NmuCI	GTSAC	1 cut(s)	382
OliI	CACNNNNGTG	1 cut(s)	581
PagI	TCATGA	1 cut(s)	397
PceI	AGGCCT	1 cut(s)	128
PctI	GAATGC	1 cut(s)	116
PkrI	GCNGC	1 cut(s)	588
PpuMI	RGGWCCY	1 cut(s)	445
Psp5II	RGGWCCY	1 cut(s)	445
PspN4I	GGNNCC	1 cut(s)	447
PspPI	GGNCC	1 cut(s)	445
PspPPI	RGGWCCY	1 cut(s)	445
PstNI	CAGNNNCTG	1 cut(s)	526
RsaI	GTAC	2 cut(s)	96, 269
RsaNI	GTAC	2 cut(s)	95, 268
RseI	CAYNNNNRTG	3 cut(s)	261, 396, 581
SaqAI	TTAA	3 cut(s)	26, 132, 359
SatI	GCNGC	1 cut(s)	587
Sau3AI	GATC	2 cut(s)	280, 432
Sau96I	GGNCC	1 cut(s)	445
ScaI	AGTACT	1 cut(s)	269
SduI	GDGCHC	1 cut(s)	258
SetI	ASST	8 cut(s)	33, 165, 180, 231, 255, 305, 342, 384
SfaNI	GCATC	1 cut(s)	513
SinI	GGWCC	1 cut(s)	445
SmiMI	CAYNNNNRTG	3 cut(s)	261, 396, 581
Sse9I	AATT	5 cut(s)	196, 355, 362, 406, 456
SseBI	AGGCCT	1 cut(s)	128
SsiI	CCGC	2 cut(s)	59, 586
StuI	AGGCCT	1 cut(s)	128
StyI	CCWWGG	2 cut(s)	411, 547
TaqI	TCGA	1 cut(s)	172
TasI	AATT	5 cut(s)	196, 355, 362, 406, 456
TatI	WGTACW	2 cut(s)	94, 267
TauI	GCSGC	1 cut(s)	589
Tru1I	TTAA	3 cut(s)	26, 132, 359
Tru9I	TTAA	3 cut(s)	26, 132, 359
TscAI	CASTG	3 cut(s)	381, 435, 571
TseFI	GTSAC	1 cut(s)	382
Tsp45I	GTSAC	1 cut(s)	382
TspDTI	ATGAA	7 cut(s)	31, 196, 285, 350, 386, 417, 456
TspRI	CASTG	3 cut(s)	381, 435, 571
VneI	GTGCAC	1 cut(s)	254
VpaK11BI	GGWCC	1 cut(s)	445
XagI	CCTNNNNNAGG	1 cut(s)	133
XapI	RAATTY	3 cut(s)	355, 406, 456
ZrmI	AGTACT	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.