Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001128

Physical Location & Seq

Genomic Coordinates Forward (+)

5579725 .. 5580557

Gene Structure 833 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36335

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGAACGCTTTATAGAAGAGGCCCTTAAAAGGTTGAAAAAGAAAGAGGATGTGGAGGCAAACAATCGAAAGGTGAAAGTGTATGGTAGGAATTATACATTCATTGAGACCAGATGGAAGAAGCTCAGAGTTTGTGATCTTGTCAAGGTGCACAAGGATGAATACTTTCTTGCTGATCTGCTTTTGCTTTCATCAAGCTATGAGGATGGCATTTGCTATGTGGAAACTATGAACCTTGATGGAGAAACAAATTTAAAATTGAACCATGCACTGGAGGCGAGATCCCATCTTCATGATGAAAATTCCTTGGAAAGATTTAGGGCAGTGATCAAGTGTGAGGACCCAAATAAAATTCTATATTCATTTGTTGGGACTTTGTTCTATAACGGTAGAGAACACCCACTTTCCTTGCAACAGATGCTGAAAAATACAGAATATGTCCATGGATTTGTTGTTTTCACTGGGCATGACACAGAAGTGTGGCAAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004012 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006900 GO:0006996 GO:0008150 GO:0009987 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031984 GO:0033036 GO:0034204 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045332 GO:0048193 GO:0048194 GO:0051179 GO:0051234 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0071944 GO:0097035 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase E1-E2_ATPase PhoLip_ATPase_C PhoLip_ATPase_N

Protein Analysis

163

Amino Acids

19.29

Weight (kDa)

6.39

Isoelectric Point (pI)

33.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66055 AT5G66055
fragaria_vesca	FvH4_1g10990 FvH4_1g10990
malus_domestica	MD15G1236900.v1.1
prunus_persica	Prupe.7G175600_v2.0.a1
pyrus_communis	pycom15g21070
rosa_chinensis	RchiOBHm_Chr1g0316921 RchiOBHm_Chr1g0316981 RchiOBHm_Chr2g0098251 RchiOBHm_Chr2g0145411 RchiOBHm_Chr4g0390291 RchiOBHm_Chr5g0073551
rosa_laevigata	RLG00000001656 RLG00000016779 RLG00000027817 RLG00000030637 RLG00000032089
rosa_multiflora	Rmu_co8173478.1_g000001 Rmu_sc0000104.1_g000031 Rmu_sc0000712.1_g000024 Rmu_sc0001298.1_g000058 Rmu_sc0002048.1_g000015 Rmu_sc0002398.1_g000019 Rmu_sc0004138.1_g000005 Rmu_sc0007472.1_g000006 Rmu_sc0009922.1_g000006
rosa_roxburghii	Rroxscaffold_2G00094620 Rroxscaffold_2G00144120
rosa_rugosa	Rorug02G0071600 Rorug02G0547800 Rorug04G0008500 Rorug04G0008600 Rorug04G0008600 Rorug04G0208000 Rorug05G0455100.1
rosa_samantha	Rh1AG024600 Rh1AG024700 Rh1CG022000 Rh1CG022900 Rh1DG021700 Rh2AG118600 Rh2BG121700 Rh2BG300700 Rh2BG456300 Rh2CG123300 Rh2CG279400 Rh2DG123300 Rh2DG466200 Rh4AG245100 Rh4BG023700 Rh4BG025500 Rh4BG250300 Rh4DG100600 Rh5DG257900 Rh6AG184700
rosa_wichuraiana	Rw1G001670 Rw2G009310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	271
AclWI	GGATC	1 cut(s)	276
AcsI	RAATTY	3 cut(s)	250, 301, 351
AfiI	CCNNNNNNNGG	2 cut(s)	30, 271
AgsI	TTSAA	2 cut(s)	37, 262
AleI	CACNNNNGTG	1 cut(s)	476
AluBI	AGCT	2 cut(s)	124, 198
AluI	AGCT	2 cut(s)	124, 198
Alw21I	GWGCWC	1 cut(s)	153
Alw26I	GTCTC	1 cut(s)	101
Alw44I	GTGCAC	1 cut(s)	149
AlwI	GGATC	1 cut(s)	276
AlwNI	CAGNNNCTG	1 cut(s)	421
AoxI	GGCC	1 cut(s)	21
ApaLI	GTGCAC	1 cut(s)	149
ApoI	RAATTY	3 cut(s)	250, 301, 351
Asp700I	GAANNNNTTC	1 cut(s)	165
AspS9I	GGNCC	2 cut(s)	22, 340
AsuHPI	GGTGA	1 cut(s)	85
AvaII	GGWCC	1 cut(s)	340
BaeGI	GKGCMC	1 cut(s)	153
Bbv12I	GWGCWC	1 cut(s)	153
BccI	CCATC	4 cut(s)	108, 200, 233, 294
BclI	TGATCA	1 cut(s)	327
BcoDI	GTCTC	1 cut(s)	101
Bme18I	GGWCC	1 cut(s)	340
BmgT120I	GGNCC	2 cut(s)	22, 340
BmiI	GGNNCC	1 cut(s)	342
BmrI	ACTGGG	1 cut(s)	471
BmsI	GCATC	1 cut(s)	408
BmuI	ACTGGG	1 cut(s)	471
BpmI	CTGGAG	1 cut(s)	293
BsaI	GGTCTC	1 cut(s)	101
BsaJI	CCNNGG	2 cut(s)	306, 442
Bsc4I	CCNNNNNNNGG	2 cut(s)	30, 271
Bse1I	ACTGG	2 cut(s)	276, 466
BseDI	CCNNGG	2 cut(s)	306, 442
BseGI	GGATG	3 cut(s)	55, 163, 211
BseLI	CCNNNNNNNGG	2 cut(s)	30, 271
BseMII	CTCAG	1 cut(s)	139
BseNI	ACTGG	2 cut(s)	276, 466
BseSI	GKGCMC	1 cut(s)	153
BshFI	GGCC	1 cut(s)	23
BsiHKAI	GWGCWC	1 cut(s)	153
BslFI	GGGAC	1 cut(s)	385
BslI	CCNNNNNNNGG	2 cut(s)	30, 271
BsmAI	GTCTC	1 cut(s)	101
BsmFI	GGGAC	1 cut(s)	385
BsnI	GGCC	1 cut(s)	23
Bso31I	GGTCTC	1 cut(s)	101
Bsp1286I	GDGCHC	1 cut(s)	153
Bsp143I	GATC	4 cut(s)	136, 175, 281, 327
Bsp19I	CCATGG	1 cut(s)	442
BspANI	GGCC	1 cut(s)	23
BspCNI	CTCAG	1 cut(s)	138
BspHI	TCATGA	1 cut(s)	292
BspLI	GGNNCC	1 cut(s)	342
BspPI	GGATC	1 cut(s)	276
BspTNI	GGTCTC	1 cut(s)	101
BsrI	ACTGG	2 cut(s)	276, 466
BssECI	CCNNGG	2 cut(s)	306, 442
BssMI	GATC	4 cut(s)	136, 175, 281, 327
BssT1I	CCWWGG	2 cut(s)	306, 442
Bst4CI	ACNGT	1 cut(s)	389
Bst6I	CTCTTC	1 cut(s)	12
BstAPI	GCANNNNNTGC	1 cut(s)	418
BstDEI	CTNAG	1 cut(s)	125
BstDSI	CCRYGG	1 cut(s)	442
BstF5I	GGATG	3 cut(s)	55, 163, 211
BstKTI	GATC	4 cut(s)	139, 178, 284, 330
BstMAI	GTCTC	1 cut(s)	101
BstMBI	GATC	4 cut(s)	136, 175, 281, 327
BstMWI	GCNNNNNNNGC	2 cut(s)	275, 418
BstSLI	GKGCMC	1 cut(s)	153
BstX2I	RGATCY	1 cut(s)	281
BstYI	RGATCY	1 cut(s)	281
BsuRI	GGCC	1 cut(s)	23
BtgI	CCRYGG	1 cut(s)	442
BtsCI	GGATG	3 cut(s)	55, 163, 211
BtsI	GCAGTG	1 cut(s)	330
BtsIMutI	CAGTG	3 cut(s)	269, 330, 459
CaiI	CAGNNNCTG	1 cut(s)	421
CciI	TCATGA	1 cut(s)	292
Cfr13I	GGNCC	2 cut(s)	22, 340
CspCI	CAANNNNNGTGG	2 cut(s)	390, 425
CviAII	CATG	4 cut(s)	266, 293, 443, 467
CviJI	RGCY	3 cut(s)	23, 124, 198
CviKI_1	RGCY	3 cut(s)	23, 124, 198
DdeI	CTNAG	1 cut(s)	125
DpnI	GATC	4 cut(s)	138, 177, 283, 329
DpnII	GATC	4 cut(s)	136, 175, 281, 327
DraI	TTTAAA	1 cut(s)	255
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
Eco130I	CCWWGG	2 cut(s)	306, 442
Eco31I	GGTCTC	1 cut(s)	101
Eco47I	GGWCC	1 cut(s)	340
EcoO109I	RGGNCCY	2 cut(s)	22, 340
EcoT14I	CCWWGG	2 cut(s)	306, 442
ErhI	CCWWGG	2 cut(s)	306, 442
FaeI	CATG	4 cut(s)	269, 296, 446, 470
FalI	AAGNNNNNCTT	2 cut(s)	9, 41
FaqI	GGGAC	1 cut(s)	385
FatI	CATG	4 cut(s)	265, 292, 442, 466
FbaI	TGATCA	1 cut(s)	327
FokI	GGATG	3 cut(s)	62, 170, 218
GsuI	CTGGAG	1 cut(s)	293
HaeIII	GGCC	1 cut(s)	23
Hin1II	CATG	4 cut(s)	269, 296, 446, 470
HphI	GGTGA	1 cut(s)	85
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	1 cut(s)	128
Hpy188III	TCNNGA	1 cut(s)	293
Hpy8I	GTNNAC	1 cut(s)	151
HpyCH4III	ACNGT	1 cut(s)	389
HpyCH4V	TGCA	3 cut(s)	151, 269, 412
HpyF10VI	GCNNNNNNNGC	2 cut(s)	275, 418
HpyF3I	CTNAG	1 cut(s)	125
Hsp92II	CATG	4 cut(s)	269, 296, 446, 470
Ksp22I	TGATCA	1 cut(s)	327
Kzo9I	GATC	4 cut(s)	136, 175, 281, 327
LpnPI	CCDG	3 cut(s)	124, 257, 447
LweI	GCATC	1 cut(s)	408
MalI	GATC	4 cut(s)	138, 177, 283, 329
MboI	GATC	4 cut(s)	136, 175, 281, 327
MboII	GAAGA	3 cut(s)	29, 130, 281
MflI	RGATCY	1 cut(s)	281
MhlI	GDGCHC	1 cut(s)	153
MluCI	AATT	5 cut(s)	91, 250, 257, 301, 351
MnlI	CCTC	6 cut(s)	13, 40, 49, 196, 268, 331
MroXI	GAANNNNTTC	1 cut(s)	165
MseI	TTAA	2 cut(s)	27, 254
MslI	CAYNNNNRTG	3 cut(s)	156, 291, 476
MwoI	GCNNNNNNNGC	2 cut(s)	275, 418
NcoI	CCATGG	1 cut(s)	442
NdeII	GATC	4 cut(s)	136, 175, 281, 327
NlaIII	CATG	4 cut(s)	269, 296, 446, 470
NlaIV	GGNNCC	1 cut(s)	342
OliI	CACNNNNGTG	1 cut(s)	476
PagI	TCATGA	1 cut(s)	292
PdmI	GAANNNNTTC	1 cut(s)	165
PflMI	CCANNNNNTGG	1 cut(s)	271
PpuMI	RGGWCCY	1 cut(s)	340
Psp5II	RGGWCCY	1 cut(s)	340
PspN4I	GGNNCC	1 cut(s)	342
PspPI	GGNCC	2 cut(s)	22, 340
PspPPI	RGGWCCY	1 cut(s)	340
PstNI	CAGNNNCTG	1 cut(s)	421
PsuI	RGATCY	1 cut(s)	281
RseI	CAYNNNNRTG	3 cut(s)	156, 291, 476
SaqAI	TTAA	2 cut(s)	27, 254
Sau3AI	GATC	4 cut(s)	136, 175, 281, 327
Sau96I	GGNCC	2 cut(s)	22, 340
SduI	GDGCHC	1 cut(s)	153
SetI	ASST	6 cut(s)	35, 75, 126, 150, 200, 237
SfaNI	GCATC	1 cut(s)	408
SinI	GGWCC	1 cut(s)	340
SmiMI	CAYNNNNRTG	3 cut(s)	156, 291, 476
Sse9I	AATT	5 cut(s)	91, 250, 257, 301, 351
StyI	CCWWGG	2 cut(s)	306, 442
TaaI	ACNGT	1 cut(s)	389
TaqI	TCGA	1 cut(s)	67
TasI	AATT	5 cut(s)	91, 250, 257, 301, 351
Tru1I	TTAA	2 cut(s)	27, 254
Tru9I	TTAA	2 cut(s)	27, 254
TscAI	CASTG	3 cut(s)	276, 330, 466
TspDTI	ATGAA	7 cut(s)	91, 174, 180, 245, 281, 312, 351
TspRI	CASTG	3 cut(s)	276, 330, 466
Van91I	CCANNNNNTGG	1 cut(s)	271
VneI	GTGCAC	1 cut(s)	149
VpaK11BI	GGWCC	1 cut(s)	340
XapI	RAATTY	3 cut(s)	250, 301, 351
XmnI	GAANNNNTTC	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.