Rh2AG118600

Ankyrin repeat domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001128
Physical Location & Seq
Reverse (-)
10684847 .. 10687074
2228 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG118600.1

Sequence Viewer

Length: 1062 bp
ATGTCACTCTCTTCAGCTCTAAACCCCCAAACCTCGAAGCTCTTCTCTCTCCTCCCCACCCCATCTCTCTCTTTCACACCCCACAAGCTCTCACCACCCACCACCCTGAAATTCTCATCCAAACTCCACACCCTCTCACCCTCCTTCAACTCCTCTCACTCCACCTTGGAAGAAGACCACGTCATCGGCGACTGCGTCGTCTTCGAAGAGGGCGTGTTCGACGACCCGTATCTTCAAAACGACACCGAAATCGAGCATTTCAACCCGGAAAAGCCGAGGCCCAGAAAACGCGTTGAAATTGAGACCGAGAATTTGGTGCCGGAGAAATGGAAGGAGGTGCAGGCCACAGTGAACATAACAAAGAAAGAGAGGAGGAAGATTGCGCAGGAGTTGGAGTTCGGTTCGAGGGTCGAGAAGAACAAGAGGGGGTTGGAGCCCATAAGGAATTTGAATTTGGAGGAGTACAAGGCGTATAGAGAGGCCAAGTTGAACCAGCTGAAGCCACTGGTTTTGGATAGGCCTGGCAAGTTTAAGGAGGAGGATGAAGAGTGTGAAGGTGGTGATGGGTTTGTGAGTGAGAGAGTGGCGCCTAAGAATCCCAGGTGGGCTGTTTATGGGAAGGGTTTGGAGGATGTTACTGAGTTTTTTAACAGTGGCCATTATGAGCCTGGTGTGAAGAAATCTGAAGGACCCCGGCCTTTGTTTACGAAAGAGGAAAAGCTGATGCTGAATAGGCGAAAACCTGATATAGCTGCTGCCACTTCTAGTAAATGGCTGCCCCTTCACACTCTTGCTGCATCAGGAGAATATTACCTTATGGACGCTTTATTGAAACATGAAGCTGATATCAATGCTGTGGATAAGGATGATTGGACTGTTCTTCACAAAGCAATTATTGGTAAAAACCAGGCCATTACAAACTATCTTCTCAGAGAATCGGCTAATCCATTTGTTCGTGATAAAGATGGATTGACCCCTCTTGAGCTTTGCCTCTATTCTGGCCGAGACACGAGGACTTACGAGCTGATTAAGCTATTGAAGCTTGTTCCCAAAACCCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
Ank_2 Ank_4 Ank_5 RRM_1

Protein Analysis

353

Amino Acids

40.32

Weight (kDa)

6.78

Isoelectric Point (pI)

42.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 261 - 335 2e-09 Ankyrin repeats (3 copies)
Ank_4 PF13637 261 - 310 1.8e-07 Ankyrin repeats (many copies)
Ank_5 PF13857 276 - 330 3.3e-07 Ankyrin repeats (many copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 197
Acc16I TGCGCA 1 cut(s) 384
AccB1I GGYRCC 2 cut(s) 316, 586
AccII CGCG 1 cut(s) 291
AcoI YGGCCR 2 cut(s) 655, 1000
AcsI RAATTY 4 cut(s) 110, 310, 445, 451
AcuI CTGAAG 2 cut(s) 518, 705
AcyI GRCGYC 1 cut(s) 587
AfaI GTAC 1 cut(s) 464
AflIII ACRYGT 1 cut(s) 289
AgsI TTSAA 8 cut(s) 148, 236, 262, 296, 451, 490, 832, 1039
AjiI CACGTC 1 cut(s) 181
AjnI CCWGG 4 cut(s) 520, 599, 667, 906
AjuI GAANNNNNNNTTGG 2 cut(s) 437, 469
AloI GAACNNNNNNTCC 2 cut(s) 380, 412
Alw26I GTCTC 2 cut(s) 296, 999
AoxI GGCC 8 cut(s) 278, 342, 480, 518, 655, 695, 909, 1000
ApeKI GCWGC 4 cut(s) 752, 755, 775, 794
ApoI RAATTY 4 cut(s) 110, 310, 445, 451
ArsI GACNNNNNNTTYG 2 cut(s) 295, 327
Asp700I GAANNNNTTC 1 cut(s) 41
AspLEI GCGC 2 cut(s) 385, 589
AspS9I GGNCC 2 cut(s) 279, 689
AsuC2I CCSGG 2 cut(s) 266, 694
AsuHPI GGTGA 3 cut(s) 84, 129, 572
AsuII TTCGAA 1 cut(s) 204
AvaII GGWCC 1 cut(s) 689
BalI TGGCCA 1 cut(s) 657
BanI GGYRCC 2 cut(s) 316, 586
BanII GRGCYC 1 cut(s) 438
BauI CACGAG 1 cut(s) 1009
BbsI GAAGAC 2 cut(s) 180, 193
BbvI GCAGC 4 cut(s) 739, 742, 762, 781
BccI CCATC 3 cut(s) 70, 557, 959
BciT130I CCWGG 4 cut(s) 522, 601, 669, 908
BcnI CCSGG 2 cut(s) 266, 694
BcoDI GTCTC 2 cut(s) 296, 999
BfaI CTAG 1 cut(s) 765
BfoI RGCGCY 1 cut(s) 590
BisI GCNGC 4 cut(s) 753, 756, 776, 795
BlsI GCNGC 4 cut(s) 754, 757, 777, 796
Bme1390I CCNGG 6 cut(s) 266, 522, 601, 669, 694, 908
Bme18I GGWCC 1 cut(s) 689
BmgBI CACGTC 1 cut(s) 181
BmgT120I GGNCC 2 cut(s) 279, 689
BmiI GGNNCC 4 cut(s) 318, 435, 588, 691
BmrFI CCNGG 6 cut(s) 266, 522, 601, 669, 694, 908
BmsI GCATC 2 cut(s) 714, 806
BpiI GAAGAC 2 cut(s) 180, 193
Bpu14I TTCGAA 1 cut(s) 204
BpuEI CTTGAG 1 cut(s) 1001
BpuMI CCSGG 2 cut(s) 266, 694
BsaHI GRCGYC 1 cut(s) 587
BsaI GGTCTC 1 cut(s) 296
BsaJI CCNNGG 4 cut(s) 165, 275, 599, 692
BsaXI ACNNNNNCTCC 2 cut(s) 380, 410
Bse1I ACTGG 1 cut(s) 510
BseBI CCWGG 4 cut(s) 522, 601, 669, 908
BseDI CCNNGG 4 cut(s) 165, 275, 599, 692
BseGI GGATG 4 cut(s) 116, 547, 637, 871
BseMII CTCAG 2 cut(s) 630, 943
BseNI ACTGG 1 cut(s) 510
BseRI GAGGAG 5 cut(s) 41, 142, 385, 473, 551
BseXI GCAGC 4 cut(s) 739, 742, 762, 781
BsgI GTGCAG 1 cut(s) 359
Bsh1236I CGCG 1 cut(s) 291
BshFI GGCC 8 cut(s) 280, 344, 482, 520, 657, 697, 911, 1002
BshNI GGYRCC 2 cut(s) 316, 586
BsiSI CCGG 3 cut(s) 266, 320, 694
BsmAI GTCTC 2 cut(s) 296, 999
BsnI GGCC 8 cut(s) 280, 344, 482, 520, 657, 697, 911, 1002
Bso31I GGTCTC 1 cut(s) 296
Bsp119I TTCGAA 1 cut(s) 204
Bsp1286I GDGCHC 1 cut(s) 438
BspANI GGCC 8 cut(s) 280, 344, 482, 520, 657, 697, 911, 1002
BspCNI CTCAG 2 cut(s) 631, 942
BspFNI CGCG 1 cut(s) 291
BspLI GGNNCC 4 cut(s) 318, 435, 588, 691
BspQI GCTCTTC 1 cut(s) 47
BspT104I TTCGAA 1 cut(s) 204
BspT107I GGYRCC 2 cut(s) 316, 586
BspTNI GGTCTC 1 cut(s) 296
BsrI ACTGG 1 cut(s) 510
BssECI CCNNGG 4 cut(s) 165, 275, 599, 692
BssNI GRCGYC 1 cut(s) 587
BssSI CACGAG 1 cut(s) 1009
BssT1I CCWWGG 1 cut(s) 165
Bst2BI CACGAG 1 cut(s) 1009
Bst2UI CCWGG 4 cut(s) 522, 601, 669, 908
Bst4CI ACNGT 3 cut(s) 349, 653, 877
Bst6I CTCTTC 4 cut(s) 16, 47, 201, 540
BstACI GRCGYC 1 cut(s) 587
BstBI TTCGAA 1 cut(s) 204
BstC8I GCNNGC 1 cut(s) 342
BstDEI CTNAG 3 cut(s) 591, 639, 929
BstF5I GGATG 4 cut(s) 116, 547, 637, 871
BstFNI CGCG 1 cut(s) 291
BstH2I RGCGCY 1 cut(s) 590
BstHHI GCGC 2 cut(s) 385, 589
BstMAI GTCTC 2 cut(s) 296, 999
BstMWI GCNNNNNNNGC 3 cut(s) 733, 1030, 1039
BstNI CCWGG 4 cut(s) 522, 601, 669, 908
BstSCI CCNGG 6 cut(s) 264, 520, 599, 667, 692, 906
BstUI CGCG 1 cut(s) 291
BstV1I GCAGC 4 cut(s) 739, 742, 762, 781
BstV2I GAAGAC 2 cut(s) 180, 193
BsuRI GGCC 8 cut(s) 280, 344, 482, 520, 657, 697, 911, 1002
BtrI CACGTC 1 cut(s) 181
BtsCI GGATG 4 cut(s) 116, 547, 637, 871
BtsIMutI CAGTG 3 cut(s) 354, 503, 658
Cac8I GCNNGC 1 cut(s) 342
CfoI GCGC 2 cut(s) 385, 589
Cfr13I GGNCC 2 cut(s) 279, 689
CseI GACGC 2 cut(s) 184, 830
Csp6I GTAC 1 cut(s) 463
CspCI CAANNNNNGTGG 2 cut(s) 492, 527
CviAII CATG 1 cut(s) 836
CviQI GTAC 1 cut(s) 463
DdeI CTNAG 3 cut(s) 591, 639, 929
DinI GGCGCC 1 cut(s) 588
DrdI GACNNNNNNGTC 1 cut(s) 197
DseDI GACNNNNNNGTC 1 cut(s) 197
EaeI YGGCCR 2 cut(s) 655, 1000
Eam1104I CTCTTC 4 cut(s) 16, 47, 201, 540
EarI CTCTTC 4 cut(s) 16, 47, 201, 540
Eco130I CCWWGG 1 cut(s) 165
Eco147I AGGCCT 1 cut(s) 520
Eco24I GRGCYC 1 cut(s) 438
Eco31I GGTCTC 1 cut(s) 296
Eco32I GATATC 1 cut(s) 847
Eco47I GGWCC 1 cut(s) 689
Eco57I CTGAAG 2 cut(s) 518, 705
EcoO109I RGGNCCY 1 cut(s) 689
EcoRII CCWGG 4 cut(s) 520, 599, 667, 906
EcoRV GATATC 1 cut(s) 847
EcoT14I CCWWGG 1 cut(s) 165
EcoT38I GRGCYC 1 cut(s) 438
EgeI GGCGCC 1 cut(s) 588
EheI GGCGCC 1 cut(s) 588
ErhI CCWWGG 1 cut(s) 165
FaeI CATG 1 cut(s) 839
FaiI YATR 8 cut(s) 356, 440, 474, 615, 663, 749, 818, 837
FatI CATG 1 cut(s) 835
Fnu4HI GCNGC 4 cut(s) 753, 756, 776, 795
FokI GGATG 4 cut(s) 103, 554, 644, 878
FriOI GRGCYC 1 cut(s) 438
Fsp4HI GCNGC 4 cut(s) 753, 756, 776, 795
FspBI CTAG 1 cut(s) 765
FspI TGCGCA 1 cut(s) 384
GlaI GCGC 2 cut(s) 384, 588
GluI GCNGC 4 cut(s) 753, 756, 776, 795
HaeII RGCGCY 1 cut(s) 590
HaeIII GGCC 8 cut(s) 280, 344, 482, 520, 657, 697, 911, 1002
HapII CCGG 3 cut(s) 266, 320, 694
HgaI GACGC 2 cut(s) 184, 830
HhaI GCGC 2 cut(s) 385, 589
Hin1I GRCGYC 1 cut(s) 587
Hin1II CATG 1 cut(s) 839
Hin6I GCGC 2 cut(s) 383, 587
HinP1I GCGC 2 cut(s) 383, 587
HindIII AAGCTT 1 cut(s) 1040
HinfI GANTC 2 cut(s) 595, 935
HpaII CCGG 3 cut(s) 266, 320, 694
HphI GGTGA 3 cut(s) 84, 129, 572
Hpy166II GTNNAC 2 cut(s) 352, 705
Hpy188I TCNGA 2 cut(s) 685, 932
Hpy188III TCNNGA 4 cut(s) 412, 801, 956, 980
Hpy8I GTNNAC 2 cut(s) 352, 705
Hpy99I CGWCG 2 cut(s) 200, 224
HpyAV CCTTC 6 cut(s) 154, 325, 548, 613, 680, 791
HpyCH4III ACNGT 3 cut(s) 349, 653, 877
HpyCH4IV ACGT 1 cut(s) 180
HpyCH4V TGCA 2 cut(s) 340, 797
HpyF10VI GCNNNNNNNGC 3 cut(s) 733, 1030, 1039
HpyF3I CTNAG 3 cut(s) 591, 639, 929
HpySE526I ACGT 1 cut(s) 180
Hsp92I GRCGYC 1 cut(s) 587
Hsp92II CATG 1 cut(s) 839
HspAI GCGC 2 cut(s) 383, 587
KasI GGCGCC 1 cut(s) 586
LguI GCTCTTC 1 cut(s) 47
LmnI GCTCC 1 cut(s) 433
Lsp1109I GCAGC 4 cut(s) 739, 742, 762, 781
LweI GCATC 2 cut(s) 714, 806
MaeI CTAG 1 cut(s) 765
MaeII ACGT 1 cut(s) 180
MaeIII GTNAC 2 cut(s) 3, 634
MhlI GDGCHC 1 cut(s) 438
MlsI TGGCCA 1 cut(s) 657
MluCI AATT 6 cut(s) 110, 297, 310, 445, 451, 891
MluI ACGCGT 1 cut(s) 289
MluNI TGGCCA 1 cut(s) 657
Mly113I GGCGCC 1 cut(s) 587
MmeI TCCRAC 2 cut(s) 372, 411
Mox20I TGGCCA 1 cut(s) 657
MroXI GAANNNNTTC 1 cut(s) 41
MscI TGGCCA 1 cut(s) 657
MseI TTAA 3 cut(s) 531, 648, 1029
Msp20I TGGCCA 1 cut(s) 657
MspA1I CMGCKG 1 cut(s) 496
MspI CCGG 3 cut(s) 266, 320, 694
MspR9I CCNGG 6 cut(s) 266, 522, 601, 669, 694, 908
MvaI CCWGG 4 cut(s) 522, 601, 669, 908
MvnI CGCG 1 cut(s) 291
MwoI GCNNNNNNNGC 3 cut(s) 733, 1030, 1039
NarI GGCGCC 1 cut(s) 587
NciI CCSGG 2 cut(s) 266, 694
NlaIII CATG 1 cut(s) 839
NlaIV GGNNCC 4 cut(s) 318, 435, 588, 691
NmeAIII GCCGAG 2 cut(s) 300, 1028
NmuCI GTSAC 1 cut(s) 3
NsbI TGCGCA 1 cut(s) 384
NspV TTCGAA 1 cut(s) 204
PceI AGGCCT 1 cut(s) 520
PciSI GCTCTTC 1 cut(s) 47
PcsI WCGNNNNNNNCGW 3 cut(s) 186, 192, 210
PdmI GAANNNNTTC 1 cut(s) 41
PfeI GAWTC 2 cut(s) 595, 935
PflFI GACNNNGTC 2 cut(s) 179, 194
PkrI GCNGC 4 cut(s) 754, 757, 777, 796
PluTI GGCGCC 1 cut(s) 590
PpuMI RGGWCCY 1 cut(s) 689
Psp5II RGGWCCY 1 cut(s) 689
Psp6I CCWGG 4 cut(s) 520, 599, 667, 906
PspGI CCWGG 4 cut(s) 520, 599, 667, 906
PspN4I GGNNCC 4 cut(s) 318, 435, 588, 691
PspPI GGNCC 2 cut(s) 279, 689
PspPPI RGGWCCY 1 cut(s) 689
PsyI GACNNNGTC 2 cut(s) 179, 194
PvuII CAGCTG 1 cut(s) 496
RsaI GTAC 1 cut(s) 464
RsaNI GTAC 1 cut(s) 463
SapI GCTCTTC 1 cut(s) 47
SaqAI TTAA 3 cut(s) 531, 648, 1029
SatI GCNGC 4 cut(s) 753, 756, 776, 795
Sau96I GGNCC 2 cut(s) 279, 689
ScrFI CCNGG 6 cut(s) 266, 522, 601, 669, 694, 908
SduI GDGCHC 1 cut(s) 438
SfaNI GCATC 2 cut(s) 714, 806
SfoI GGCGCC 1 cut(s) 588
SfuI TTCGAA 1 cut(s) 204
SinI GGWCC 1 cut(s) 689
SmlI CTYRAG 1 cut(s) 980
SmoI CTYRAG 1 cut(s) 980
Sse9I AATT 6 cut(s) 110, 297, 310, 445, 451, 891
SseBI AGGCCT 1 cut(s) 520
SspDI GGCGCC 1 cut(s) 586
SspI AATATT 1 cut(s) 809
SspMI CTAG 1 cut(s) 765
StuI AGGCCT 1 cut(s) 520
StyD4I CCNGG 6 cut(s) 264, 520, 599, 667, 692, 906
StyI CCWWGG 1 cut(s) 165
TaaI ACNGT 3 cut(s) 349, 653, 877
TaiI ACGT 1 cut(s) 183
TaqI TCGA 6 cut(s) 35, 204, 219, 252, 404, 411
TaqII GACCGA 1 cut(s) 320
TasI AATT 6 cut(s) 110, 297, 310, 445, 451, 891
TatI WGTACW 1 cut(s) 462
TfiI GAWTC 2 cut(s) 595, 935
Tru1I TTAA 3 cut(s) 531, 648, 1029
Tru9I TTAA 3 cut(s) 531, 648, 1029
TscAI CASTG 3 cut(s) 354, 510, 658
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 4 cut(s) 752, 755, 775, 794
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 2 cut(s) 558, 852
TspRI CASTG 3 cut(s) 354, 510, 658
Tth111I GACNNNGTC 2 cut(s) 179, 194
VpaK11BI GGWCC 1 cut(s) 689
XapI RAATTY 4 cut(s) 110, 310, 445, 451
XcmI CCANNNNNNNNNTGG 1 cut(s) 665
XmnI GAANNNNTTC 1 cut(s) 41
XspI CTAG 1 cut(s) 765
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.