RLG00000027817

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001128
Physical Location & Seq
Reverse (-)
15640721 .. 15641160
440 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027817

Sequence Viewer

Length: 357 bp
ATGGCGAAGAACGACGCGTCTTTGGGATCGGTGTACGAGTTCTTGAAGCGGTGCCGACTCGCTGGAGAGCGCGATGGTGAAATTGAACGCCGCTTTGCCCTCAGCGAACCCAAGGCCGATGAAGGAGTGCTTGCCGGTGCCACCCTCGATCCTAAGGATGAAGTAGCGCAACGATTTGAGCACGGTCTTGATGGAGGTCGCTGGAATTTGGATCCTCCAGTCGGATCTAGCATTGGTCCTTGCATGACCTTCTCAACTCTTGGTGAGCTTCTCGTTGCTGCTGGCTGCATCACTGACTTGGATGAGTACCGCTCGGTGAGTTTATCTTCCCCGGTTGTTTTGATTCGTGCTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

12.66

Weight (kDa)

4.73

Isoelectric Point (pI)

43.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 51, 137
AccBSI CCGCTC 1 cut(s) 312
AccII CGCG 2 cut(s) 17, 72
AciI CCGC 3 cut(s) 49, 91, 310
AclWI GGATC 5 cut(s) 34, 143, 206, 219, 232
AcsI RAATTY 1 cut(s) 205
AfaI GTAC 2 cut(s) 35, 308
AfiI CCNNNNNNNGG 1 cut(s) 221
AflIII ACRYGT 1 cut(s) 15
AgsI TTSAA 2 cut(s) 46, 86
AluBI AGCT 1 cut(s) 268
AluI AGCT 1 cut(s) 268
Alw21I GWGCWC 1 cut(s) 183
AlwI GGATC 5 cut(s) 34, 143, 206, 219, 232
AoxI GGCC 1 cut(s) 114
ApeKI GCWGC 3 cut(s) 278, 285, 350
ApoI RAATTY 1 cut(s) 205
AspLEI GCGC 2 cut(s) 72, 169
AspS9I GGNCC 1 cut(s) 236
AsuC2I CCSGG 1 cut(s) 332
AsuHPI GGTGA 3 cut(s) 89, 275, 328
AvaII GGWCC 1 cut(s) 236
AxyI CCTNAGG 1 cut(s) 153
BamHI GGATCC 1 cut(s) 211
BanI GGYRCC 2 cut(s) 51, 137
Bbv12I GWGCWC 1 cut(s) 183
BbvCI CCTCAGC 1 cut(s) 101
BbvI GCAGC 3 cut(s) 265, 272, 337
BccI CCATC 2 cut(s) 68, 185
BcnI CCSGG 1 cut(s) 332
BfaI CTAG 1 cut(s) 228
BisI GCNGC 4 cut(s) 91, 279, 286, 351
BlsI GCNGC 4 cut(s) 92, 280, 287, 352
Bme1390I CCNGG 1 cut(s) 332
Bme18I GGWCC 1 cut(s) 236
BmgT120I GGNCC 1 cut(s) 236
BmiI GGNNCC 3 cut(s) 53, 139, 213
BmrFI CCNGG 1 cut(s) 332
BmsI GCATC 1 cut(s) 297
BplI GAGNNNNNCTC 2 cut(s) 296, 328
BpmI CTGGAG 2 cut(s) 84, 201
Bpu10I CCTNAGC 1 cut(s) 101
BpuMI CCSGG 1 cut(s) 332
BsaJI CCNNGG 2 cut(s) 111, 330
Bsc4I CCNNNNNNNGG 1 cut(s) 221
Bse118I RCCGGY 1 cut(s) 134
Bse1I ACTGG 1 cut(s) 218
Bse21I CCTNAGG 1 cut(s) 153
BseDI CCNNGG 2 cut(s) 111, 330
BseGI GGATG 2 cut(s) 163, 307
BseLI CCNNNNNNNGG 1 cut(s) 221
BseMII CTCAG 1 cut(s) 115
BseNI ACTGG 1 cut(s) 218
BseXI GCAGC 3 cut(s) 265, 272, 337
Bsh1236I CGCG 2 cut(s) 17, 72
BshFI GGCC 1 cut(s) 116
BshNI GGYRCC 2 cut(s) 51, 137
BsiHKAI GWGCWC 1 cut(s) 183
BsiSI CCGG 2 cut(s) 135, 332
BslI CCNNNNNNNGG 1 cut(s) 221
BsnI GGCC 1 cut(s) 116
Bsp1286I GDGCHC 1 cut(s) 183
Bsp143I GATC 4 cut(s) 26, 148, 211, 224
BspACI CCGC 3 cut(s) 49, 91, 310
BspANI GGCC 1 cut(s) 116
BspCNI CTCAG 1 cut(s) 114
BspFNI CGCG 2 cut(s) 17, 72
BspLI GGNNCC 3 cut(s) 53, 139, 213
BspPI GGATC 5 cut(s) 34, 143, 206, 219, 232
BspT107I GGYRCC 2 cut(s) 51, 137
BsrBI CCGCTC 1 cut(s) 312
BsrFI RCCGGY 1 cut(s) 134
BsrI ACTGG 1 cut(s) 218
BssAI RCCGGY 1 cut(s) 134
BssECI CCNNGG 2 cut(s) 111, 330
BssMI GATC 4 cut(s) 26, 148, 211, 224
BssT1I CCWWGG 1 cut(s) 111
Bst4CI ACNGT 1 cut(s) 185
BstC8I GCNNGC 2 cut(s) 132, 283
BstDEI CTNAG 3 cut(s) 101, 153, 354
BstF5I GGATG 2 cut(s) 163, 307
BstFNI CGCG 2 cut(s) 17, 72
BstHHI GCGC 2 cut(s) 72, 169
BstKTI GATC 4 cut(s) 29, 151, 214, 227
BstMBI GATC 4 cut(s) 26, 148, 211, 224
BstSCI CCNGG 1 cut(s) 330
BstUI CGCG 2 cut(s) 17, 72
BstV1I GCAGC 3 cut(s) 265, 272, 337
BstX2I RGATCY 2 cut(s) 211, 224
BstYI RGATCY 2 cut(s) 211, 224
Bsu36I CCTNAGG 1 cut(s) 153
BsuRI GGCC 1 cut(s) 116
BtgZI GCGATG 1 cut(s) 87
BtsCI GGATG 2 cut(s) 163, 307
BtsIMutI CAGTG 1 cut(s) 291
Cac8I GCNNGC 2 cut(s) 132, 283
CfoI GCGC 2 cut(s) 72, 169
Cfr10I RCCGGY 1 cut(s) 134
Cfr13I GGNCC 1 cut(s) 236
CseI GACGC 2 cut(s) 6, 23
Csp6I GTAC 2 cut(s) 34, 307
CviAII CATG 1 cut(s) 244
CviJI RGCY 3 cut(s) 116, 268, 285
CviKI_1 RGCY 3 cut(s) 116, 268, 285
CviQI GTAC 2 cut(s) 34, 307
DdeI CTNAG 3 cut(s) 101, 153, 354
DpnI GATC 4 cut(s) 28, 150, 213, 226
DpnII GATC 4 cut(s) 26, 148, 211, 224
Eco130I CCWWGG 1 cut(s) 111
Eco47I GGWCC 1 cut(s) 236
Eco81I CCTNAGG 1 cut(s) 153
EcoT14I CCWWGG 1 cut(s) 111
ErhI CCWWGG 1 cut(s) 111
FaeI CATG 1 cut(s) 247
FaiI YATR 1 cut(s) 245
FalI AAGNNNNNCTT 2 cut(s) 114, 146
FatI CATG 1 cut(s) 243
Fnu4HI GCNGC 4 cut(s) 91, 279, 286, 351
FokI GGATG 2 cut(s) 170, 314
Fsp4HI GCNGC 4 cut(s) 91, 279, 286, 351
FspBI CTAG 1 cut(s) 228
GlaI GCGC 2 cut(s) 71, 168
GluI GCNGC 4 cut(s) 91, 279, 286, 351
GsuI CTGGAG 2 cut(s) 84, 201
HaeIII GGCC 1 cut(s) 116
HapII CCGG 2 cut(s) 135, 332
HgaI GACGC 2 cut(s) 6, 23
HhaI GCGC 2 cut(s) 72, 169
Hin1II CATG 1 cut(s) 247
Hin6I GCGC 2 cut(s) 70, 167
HinP1I GCGC 2 cut(s) 70, 167
HinfI GANTC 2 cut(s) 57, 343
HpaII CCGG 2 cut(s) 135, 332
HphI GGTGA 3 cut(s) 89, 275, 328
Hpy166II GTNNAC 1 cut(s) 34
Hpy188I TCNGA 1 cut(s) 224
Hpy188III TCNNGA 2 cut(s) 43, 188
Hpy8I GTNNAC 1 cut(s) 34
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 2 cut(s) 116, 259
HpyCH4III ACNGT 1 cut(s) 185
HpyCH4V TGCA 2 cut(s) 243, 288
HpyF3I CTNAG 3 cut(s) 101, 153, 354
Hsp92II CATG 1 cut(s) 247
HspAI GCGC 2 cut(s) 70, 167
Kzo9I GATC 4 cut(s) 26, 148, 211, 224
LpnPI CCDG 6 cut(s) 48, 148, 187, 231, 267, 345
Lsp1109I GCAGC 3 cut(s) 265, 272, 337
LweI GCATC 1 cut(s) 297
MaeI CTAG 1 cut(s) 228
MalI GATC 4 cut(s) 28, 150, 213, 226
MbiI CCGCTC 1 cut(s) 312
MboI GATC 4 cut(s) 26, 148, 211, 224
MboII GAAGA 2 cut(s) 19, 318
MflI RGATCY 2 cut(s) 211, 224
MhlI GDGCHC 1 cut(s) 183
MluCI AATT 2 cut(s) 81, 205
MluI ACGCGT 1 cut(s) 15
MlyI GAGTC 1 cut(s) 51
MmeI TCCRAC 1 cut(s) 202
MnlI CCTC 4 cut(s) 110, 155, 188, 225
MspI CCGG 2 cut(s) 135, 332
MspR9I CCNGG 1 cut(s) 332
MvnI CGCG 2 cut(s) 17, 72
NciI CCSGG 1 cut(s) 332
NdeII GATC 4 cut(s) 26, 148, 211, 224
NlaIII CATG 1 cut(s) 247
NlaIV GGNNCC 3 cut(s) 53, 139, 213
PfeI GAWTC 1 cut(s) 343
PkrI GCNGC 4 cut(s) 92, 280, 287, 352
PleI GAGTC 1 cut(s) 51
PpsI GAGTC 1 cut(s) 51
PspN4I GGNNCC 3 cut(s) 53, 139, 213
PspPI GGNCC 1 cut(s) 236
PsuI RGATCY 2 cut(s) 211, 224
RsaI GTAC 2 cut(s) 35, 308
RsaNI GTAC 2 cut(s) 34, 307
SatI GCNGC 4 cut(s) 91, 279, 286, 351
Sau3AI GATC 4 cut(s) 26, 148, 211, 224
Sau96I GGNCC 1 cut(s) 236
SchI GAGTC 1 cut(s) 51
ScrFI CCNGG 1 cut(s) 332
SduI GDGCHC 1 cut(s) 183
SetI ASST 3 cut(s) 199, 251, 270
SfaNI GCATC 1 cut(s) 297
SinI GGWCC 1 cut(s) 236
Sse9I AATT 2 cut(s) 81, 205
SsiI CCGC 3 cut(s) 49, 91, 310
SspMI CTAG 1 cut(s) 228
StyD4I CCNGG 1 cut(s) 330
StyI CCWWGG 1 cut(s) 111
TaaI ACNGT 1 cut(s) 185
TaqI TCGA 1 cut(s) 147
TasI AATT 2 cut(s) 81, 205
TauI GCSGC 1 cut(s) 93
TfiI GAWTC 1 cut(s) 343
TscAI CASTG 1 cut(s) 298
TseI GCWGC 3 cut(s) 278, 285, 350
TspDTI ATGAA 2 cut(s) 135, 174
TspRI CASTG 1 cut(s) 298
VpaK11BI GGWCC 1 cut(s) 236
XapI RAATTY 1 cut(s) 205
XspI CTAG 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.