Rw1G001670

Ankyrin repeat domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Reverse (-)
2948385 .. 2949236
852 bp
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UTR
Exon/CDS
Intron
Rw1G001670.1

Sequence Viewer

Length: 336 bp
ATGCTGCATAGGCAAAAACCTGATATGGCTTCTGCCACCTCTAGTAAGTGGTTGCCCCTTCACACTCTTGCCGTATCAGTAGAATATTACATTATGCACGCTTTATCAAAACATGAAGCTGATATTATTGCTGCGGATAAGGATGATTGGACTGTTCTTGACAAGGCAATTATCGGTAAAAACCAGGCCATTACAGACTATCTTCTCAGAGATTCGGCTAATCCATTTGTTCGTGATAAAGGGGTTGGAAGTTTATGTATGTATATATATATATTGATCCAGGTCGGTGTTGTGGCAGCTCTTTGCTCGAAAAGAAGTTTTATGTTGGATACATGA
Functional Annotation

Protein Analysis

111

Amino Acids

12.41

Weight (kDa)

6.89

Isoelectric Point (pI)

29.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 134
AclWI GGATC 1 cut(s) 271
AjnI CCWGG 2 cut(s) 183, 279
AluBI AGCT 2 cut(s) 119, 299
AluI AGCT 2 cut(s) 119, 299
AlwI GGATC 1 cut(s) 271
AoxI GGCC 1 cut(s) 186
ApeKI GCWGC 3 cut(s) 4, 131, 296
BbvI GCAGC 2 cut(s) 118, 308
BceAI ACGGC 1 cut(s) 56
BciT130I CCWGG 2 cut(s) 185, 281
BciVI GTATCC 1 cut(s) 322
BfaI CTAG 1 cut(s) 42
BfuI GTATCC 1 cut(s) 322
BisI GCNGC 3 cut(s) 5, 132, 297
BlsI GCNGC 3 cut(s) 6, 133, 298
Bme1390I CCNGG 2 cut(s) 185, 281
BmrFI CCNGG 2 cut(s) 185, 281
BseBI CCWGG 2 cut(s) 185, 281
BseGI GGATG 1 cut(s) 148
BseMII CTCAG 1 cut(s) 220
BseXI GCAGC 2 cut(s) 118, 308
BshFI GGCC 1 cut(s) 188
BsnI GGCC 1 cut(s) 188
Bsp143I GATC 1 cut(s) 276
BspACI CCGC 1 cut(s) 134
BspANI GGCC 1 cut(s) 188
BspCNI CTCAG 1 cut(s) 219
BspPI GGATC 1 cut(s) 271
BssMI GATC 1 cut(s) 276
Bst2UI CCWGG 2 cut(s) 185, 281
Bst4CI ACNGT 1 cut(s) 154
BstC8I GCNNGC 1 cut(s) 99
BstDEI CTNAG 1 cut(s) 206
BstF5I GGATG 1 cut(s) 148
BstKTI GATC 1 cut(s) 279
BstMBI GATC 1 cut(s) 276
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstNI CCWGG 2 cut(s) 185, 281
BstSCI CCNGG 2 cut(s) 183, 279
BstV1I GCAGC 2 cut(s) 118, 308
BsuI GTATCC 1 cut(s) 322
BsuRI GGCC 1 cut(s) 188
BtsCI GGATG 1 cut(s) 148
Cac8I GCNNGC 1 cut(s) 99
CviAII CATG 2 cut(s) 113, 333
CviJI RGCY 5 cut(s) 29, 119, 188, 218, 299
CviKI_1 RGCY 5 cut(s) 29, 119, 188, 218, 299
DdeI CTNAG 1 cut(s) 206
DpnI GATC 1 cut(s) 278
DpnII GATC 1 cut(s) 276
EcoRII CCWGG 2 cut(s) 183, 279
FaeI CATG 2 cut(s) 116, 336
FatI CATG 2 cut(s) 112, 332
Fnu4HI GCNGC 3 cut(s) 5, 132, 297
FokI GGATG 1 cut(s) 155
Fsp4HI GCNGC 3 cut(s) 5, 132, 297
FspBI CTAG 1 cut(s) 42
GluI GCNGC 3 cut(s) 5, 132, 297
HaeIII GGCC 1 cut(s) 188
Hin1II CATG 2 cut(s) 116, 336
HinfI GANTC 1 cut(s) 212
Hpy188I TCNGA 1 cut(s) 209
Hpy188III TCNNGA 2 cut(s) 158, 233
HpyAV CCTTC 1 cut(s) 68
HpyCH4III ACNGT 1 cut(s) 154
HpyCH4V TGCA 2 cut(s) 7, 97
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 1 cut(s) 206
Hsp92II CATG 2 cut(s) 116, 336
Kzo9I GATC 1 cut(s) 276
LpnPI CCDG 5 cut(s) 33, 170, 197, 266, 293
Lsp1109I GCAGC 2 cut(s) 118, 308
MaeI CTAG 1 cut(s) 42
MalI GATC 1 cut(s) 278
MboI GATC 1 cut(s) 276
MboII GAAGA 1 cut(s) 194
MluCI AATT 1 cut(s) 168
MmeI TCCRAC 2 cut(s) 226, 306
MnlI CCTC 1 cut(s) 49
MspR9I CCNGG 2 cut(s) 185, 281
MvaI CCWGG 2 cut(s) 185, 281
MwoI GCNNNNNNNGC 1 cut(s) 10
NdeII GATC 1 cut(s) 276
NlaIII CATG 2 cut(s) 116, 336
PfeI GAWTC 1 cut(s) 212
PkrI GCNGC 3 cut(s) 6, 133, 298
Psp6I CCWGG 2 cut(s) 183, 279
PspGI CCWGG 2 cut(s) 183, 279
SatI GCNGC 3 cut(s) 5, 132, 297
Sau3AI GATC 1 cut(s) 276
ScrFI CCNGG 2 cut(s) 185, 281
SetI ASST 5 cut(s) 22, 41, 121, 285, 301
Sse9I AATT 1 cut(s) 168
SsiI CCGC 1 cut(s) 134
SspI AATATT 1 cut(s) 86
SspMI CTAG 1 cut(s) 42
StyD4I CCNGG 2 cut(s) 183, 279
TaaI ACNGT 1 cut(s) 154
TaqI TCGA 1 cut(s) 308
TasI AATT 1 cut(s) 168
TfiI GAWTC 1 cut(s) 212
TseI GCWGC 3 cut(s) 4, 131, 296
TspDTI ATGAA 1 cut(s) 129
XspI CTAG 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.