RLG00000016779

Ankyrin repeat domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001128
Physical Location & Seq
Reverse (-)
9906948 .. 9909117
2170 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016779

Sequence Viewer

Length: 1164 bp
ATGTCACTCGCTTCAGCTCTAAACCCCCAAACCTCCAAGCTCTTCTCTATCCTCCCCACCCCATCTCTCTCTTTCACACCCCACAAGCTCTCACCACCCACCACCCTGAAATTCTCATCCAAACTCCACACCCTCTCACCCTCCTTCAACTCGTCTCACTCCACCTTCGAAGAAGAAGACCACGTCATCGGCGACTGCGTCGTGTTCGAAGAGGGCGTGTTCGACGACCCGTATCTTCAAAACGACACCGAAATCGAACATTTCAACCCGGAAAAGCCGAAGCCCAGAAAACGCGTTGAAATTGAGACTGAGAATTTGGTGCCGGAGAAATGGAAGGAGGTGCAGGCCACAGTGAACATAACAAAGAAAGAGAGGAGGAAGATTGCGCAGGAGTTGGAGTTCGGTTCGAGGGTCGAGAAGAACAAGAGGGGTTTGGAGCCCATAAGGAATTTGAATTTGGAGGAGTACAAGGCGTATAGAGAGGCCAAGTTGAACCAGCTGAAGCCACTGGTTTTGGATGTGCCTGACAAGTTTAAGGAGGAGGATGAAGAGTGTGAAGGTGGTGATGGGTTTGTGAGTGAGAGAGTGGCGCCTAAGAATCCCAGGTGGGCTGTTTATGGGAAGGGTTTGGAGGATGTTACTGAGTTCTTTAACAGTGGGCATTATGATCCTGGTGTGAAGAAATCTGAAGGACCCCGGCCTTTGTTTACGAAAGAGGAAAAGCTGATGCTGAATAGGCGAAAACCTGATATAGCTGCTGCCACTTCTAGTAAATGGCTGCCCCTTCACACTCTTGCCGCATCAGGAGAATATTACCTTATGGACGCTTTATTGAAACATGAAGCTGATATCAATGCTGTGGATAAGGATGATTGGACTGTTCTTCACAAAGCAATTATTGGTAAAAACCAGGCCATTACAAACTATCTTCTCAGAGAATCGGCTAATCCATTTGTTCGTGATAAAGATGGCGCTACCTTGATGCATTATGCTGTCCGGACAGCTTCAAGTCAAGCAATTAAGATTCTTCTGTTATACAACGTTGATATAAACCTTCAGGACAATGATGGATTAACCCCTCTTGAGCTTTGCCTCTATTCTGGCCGAGACACGCGGACTTACGAGCTGATTAAGCTATTGAAGCTTCTTCCCAAAACCCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
Ank_2 Ank_4 Ank_5 RRM_1

Protein Analysis

388

Amino Acids

44.08

Weight (kDa)

6.13

Isoelectric Point (pI)

45.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 254 - 320 1.3e-07 Ankyrin repeats (3 copies)
Ank_4 PF13637 262 - 311 2.1e-07 Ankyrin repeats (many copies)
Ank_5 PF13857 277 - 331 3.8e-06 Ankyrin repeats (many copies)
Ank_2 PF12796 305 - 369 6.3e-09 Ankyrin repeats (3 copies)
Ank_5 PF13857 313 - 364 1.2e-09 Ankyrin repeats (many copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 387
AccB1I GGYRCC 2 cut(s) 319, 589
AccII CGCG 2 cut(s) 294, 1114
AccIII TCCGGA 1 cut(s) 996
AciI CCGC 2 cut(s) 798, 1114
AclI AACGTT 1 cut(s) 1041
AclWI GGATC 1 cut(s) 662
AcoI YGGCCR 1 cut(s) 1102
AcsI RAATTY 4 cut(s) 110, 313, 448, 454
AcuI CTGAAG 3 cut(s) 521, 708, 1040
AcyI GRCGYC 1 cut(s) 590
AfaI GTAC 1 cut(s) 467
AflIII ACRYGT 1 cut(s) 292
AgsI TTSAA 9 cut(s) 148, 239, 265, 299, 454, 493, 835, 1008, 1141
AjiI CACGTC 1 cut(s) 184
AjnI CCWGG 3 cut(s) 602, 670, 909
AjuI GAANNNNNNNTTGG 2 cut(s) 440, 472
AloI GAACNNNNNNTCC 2 cut(s) 383, 415
Alw26I GTCTC 3 cut(s) 159, 299, 1101
AlwI GGATC 1 cut(s) 662
Aor13HI TCCGGA 1 cut(s) 996
AoxI GGCC 5 cut(s) 345, 483, 698, 912, 1102
ApeKI GCWGC 3 cut(s) 755, 758, 778
ApoI RAATTY 4 cut(s) 110, 313, 448, 454
ArsI GACNNNNNNTTYG 2 cut(s) 298, 330
AspLEI GCGC 3 cut(s) 388, 592, 974
AspS9I GGNCC 1 cut(s) 692
AsuC2I CCSGG 2 cut(s) 269, 697
AsuHPI GGTGA 3 cut(s) 84, 129, 575
AsuII TTCGAA 2 cut(s) 168, 207
AvaII GGWCC 1 cut(s) 692
BanI GGYRCC 2 cut(s) 319, 589
BanII GRGCYC 1 cut(s) 441
BbsI GAAGAC 1 cut(s) 183
BbvI GCAGC 3 cut(s) 742, 745, 765
BccI CCATC 4 cut(s) 70, 560, 962, 1061
BciT130I CCWGG 3 cut(s) 604, 672, 911
BcnI CCSGG 2 cut(s) 269, 697
BcoDI GTCTC 3 cut(s) 159, 299, 1101
BfaI CTAG 1 cut(s) 768
BfoI RGCGCY 2 cut(s) 593, 975
BisI GCNGC 4 cut(s) 756, 759, 779, 798
BlsI GCNGC 4 cut(s) 757, 760, 780, 799
Bme1390I CCNGG 5 cut(s) 269, 604, 672, 697, 911
Bme18I GGWCC 1 cut(s) 692
BmgBI CACGTC 1 cut(s) 184
BmgT120I GGNCC 1 cut(s) 692
BmiI GGNNCC 4 cut(s) 321, 438, 591, 694
BmrFI CCNGG 5 cut(s) 269, 604, 672, 697, 911
BmsI GCATC 3 cut(s) 717, 809, 972
BpiI GAAGAC 1 cut(s) 183
Bpu14I TTCGAA 2 cut(s) 168, 207
BpuEI CTTGAG 1 cut(s) 1103
BpuMI CCSGG 2 cut(s) 269, 697
BsaHI GRCGYC 1 cut(s) 590
BsaJI CCNNGG 2 cut(s) 602, 695
BsaWI WCCGGW 1 cut(s) 996
BsaXI ACNNNNNCTCC 2 cut(s) 383, 413
Bse1I ACTGG 1 cut(s) 513
BseAI TCCGGA 1 cut(s) 996
BseBI CCWGG 3 cut(s) 604, 672, 911
BseDI CCNNGG 2 cut(s) 602, 695
BseGI GGATG 5 cut(s) 116, 523, 550, 640, 874
BseMII CTCAG 3 cut(s) 300, 633, 946
BseNI ACTGG 1 cut(s) 513
BseRI GAGGAG 3 cut(s) 388, 476, 554
BseXI GCAGC 3 cut(s) 742, 745, 765
BsgI GTGCAG 1 cut(s) 362
Bsh1236I CGCG 2 cut(s) 294, 1114
BshFI GGCC 5 cut(s) 347, 485, 700, 914, 1104
BshNI GGYRCC 2 cut(s) 319, 589
BsiSI CCGG 4 cut(s) 269, 323, 697, 997
BsmAI GTCTC 3 cut(s) 159, 299, 1101
BsmBI CGTCTC 1 cut(s) 159
BsnI GGCC 5 cut(s) 347, 485, 700, 914, 1104
Bsp119I TTCGAA 2 cut(s) 168, 207
Bsp1286I GDGCHC 1 cut(s) 441
Bsp13I TCCGGA 1 cut(s) 996
Bsp143I GATC 1 cut(s) 667
BspACI CCGC 2 cut(s) 798, 1114
BspANI GGCC 5 cut(s) 347, 485, 700, 914, 1104
BspCNI CTCAG 3 cut(s) 301, 634, 945
BspEI TCCGGA 1 cut(s) 996
BspFNI CGCG 2 cut(s) 294, 1114
BspLI GGNNCC 4 cut(s) 321, 438, 591, 694
BspPI GGATC 1 cut(s) 662
BspQI GCTCTTC 1 cut(s) 47
BspT104I TTCGAA 2 cut(s) 168, 207
BspT107I GGYRCC 2 cut(s) 319, 589
BsrI ACTGG 1 cut(s) 513
BssECI CCNNGG 2 cut(s) 602, 695
BssMI GATC 1 cut(s) 667
BssNI GRCGYC 1 cut(s) 590
Bst2UI CCWGG 3 cut(s) 604, 672, 911
Bst4CI ACNGT 3 cut(s) 352, 656, 880
Bst6I CTCTTC 3 cut(s) 47, 204, 543
BstACI GRCGYC 1 cut(s) 590
BstBI TTCGAA 2 cut(s) 168, 207
BstC8I GCNNGC 1 cut(s) 345
BstDEI CTNAG 4 cut(s) 309, 594, 642, 932
BstF5I GGATG 5 cut(s) 116, 523, 550, 640, 874
BstFNI CGCG 2 cut(s) 294, 1114
BstH2I RGCGCY 2 cut(s) 593, 975
BstHHI GCGC 3 cut(s) 388, 592, 974
BstKTI GATC 1 cut(s) 670
BstMAI GTCTC 3 cut(s) 159, 299, 1101
BstMBI GATC 1 cut(s) 667
BstMWI GCNNNNNNNGC 3 cut(s) 736, 1132, 1141
BstNI CCWGG 3 cut(s) 604, 672, 911
BstSCI CCNGG 5 cut(s) 267, 602, 670, 695, 909
BstUI CGCG 2 cut(s) 294, 1114
BstV1I GCAGC 3 cut(s) 742, 745, 765
BstV2I GAAGAC 1 cut(s) 183
BsuRI GGCC 5 cut(s) 347, 485, 700, 914, 1104
BtrI CACGTC 1 cut(s) 184
BtsCI GGATG 5 cut(s) 116, 523, 550, 640, 874
BtsIMutI CAGTG 3 cut(s) 357, 506, 661
Cac8I GCNNGC 1 cut(s) 345
CfoI GCGC 3 cut(s) 388, 592, 974
Cfr13I GGNCC 1 cut(s) 692
CseI GACGC 2 cut(s) 187, 833
Csp6I GTAC 1 cut(s) 466
CspCI CAANNNNNGTGG 2 cut(s) 495, 530
CviAII CATG 1 cut(s) 839
CviQI GTAC 1 cut(s) 466
DdeI CTNAG 4 cut(s) 309, 594, 642, 932
DinI GGCGCC 1 cut(s) 591
DpnI GATC 1 cut(s) 669
DpnII GATC 1 cut(s) 667
EaeI YGGCCR 1 cut(s) 1102
Eam1104I CTCTTC 3 cut(s) 47, 204, 543
EarI CTCTTC 3 cut(s) 47, 204, 543
Eco24I GRGCYC 1 cut(s) 441
Eco32I GATATC 1 cut(s) 850
Eco47I GGWCC 1 cut(s) 692
Eco57I CTGAAG 3 cut(s) 521, 708, 1040
EcoO109I RGGNCCY 1 cut(s) 692
EcoRII CCWGG 3 cut(s) 602, 670, 909
EcoRV GATATC 1 cut(s) 850
EcoT22I ATGCAT 1 cut(s) 987
EcoT38I GRGCYC 1 cut(s) 441
EgeI GGCGCC 1 cut(s) 591
EheI GGCGCC 1 cut(s) 591
Esp3I CGTCTC 1 cut(s) 159
FaeI CATG 1 cut(s) 842
FatI CATG 1 cut(s) 838
Fnu4HI GCNGC 4 cut(s) 756, 759, 779, 798
FokI GGATG 5 cut(s) 103, 530, 557, 647, 881
FriOI GRGCYC 1 cut(s) 441
Fsp4HI GCNGC 4 cut(s) 756, 759, 779, 798
FspBI CTAG 1 cut(s) 768
FspI TGCGCA 1 cut(s) 387
GlaI GCGC 3 cut(s) 387, 591, 973
GluI GCNGC 4 cut(s) 756, 759, 779, 798
HaeII RGCGCY 2 cut(s) 593, 975
HaeIII GGCC 5 cut(s) 347, 485, 700, 914, 1104
HapII CCGG 4 cut(s) 269, 323, 697, 997
HgaI GACGC 2 cut(s) 187, 833
HhaI GCGC 3 cut(s) 388, 592, 974
Hin1I GRCGYC 1 cut(s) 590
Hin1II CATG 1 cut(s) 842
Hin6I GCGC 3 cut(s) 386, 590, 972
HinP1I GCGC 3 cut(s) 386, 590, 972
HindIII AAGCTT 1 cut(s) 1142
HinfI GANTC 3 cut(s) 598, 938, 1024
HpaII CCGG 4 cut(s) 269, 323, 697, 997
HphI GGTGA 3 cut(s) 84, 129, 575
Hpy166II GTNNAC 2 cut(s) 355, 708
Hpy188I TCNGA 2 cut(s) 688, 935
Hpy188III TCNNGA 6 cut(s) 415, 804, 959, 997, 1058, 1082
Hpy8I GTNNAC 2 cut(s) 355, 708
Hpy99I CGWCG 2 cut(s) 203, 227
HpyAV CCTTC 8 cut(s) 154, 175, 328, 551, 616, 683, 794, 1064
HpyCH4III ACNGT 3 cut(s) 352, 656, 880
HpyCH4IV ACGT 2 cut(s) 183, 1041
HpyCH4V TGCA 2 cut(s) 343, 985
HpyF10VI GCNNNNNNNGC 3 cut(s) 736, 1132, 1141
HpyF3I CTNAG 4 cut(s) 309, 594, 642, 932
HpySE526I ACGT 2 cut(s) 183, 1041
Hsp92I GRCGYC 1 cut(s) 590
Hsp92II CATG 1 cut(s) 842
HspAI GCGC 3 cut(s) 386, 590, 972
KasI GGCGCC 1 cut(s) 589
Kpn2I TCCGGA 1 cut(s) 996
Kzo9I GATC 1 cut(s) 667
LguI GCTCTTC 1 cut(s) 47
LmnI GCTCC 1 cut(s) 436
Lsp1109I GCAGC 3 cut(s) 742, 745, 765
LweI GCATC 3 cut(s) 717, 809, 972
MaeI CTAG 1 cut(s) 768
MaeII ACGT 2 cut(s) 183, 1041
MaeIII GTNAC 2 cut(s) 3, 637
MalI GATC 1 cut(s) 669
MboI GATC 1 cut(s) 667
MhlI GDGCHC 1 cut(s) 441
MluCI AATT 7 cut(s) 110, 300, 313, 448, 454, 894, 1017
MluI ACGCGT 1 cut(s) 292
Mly113I GGCGCC 1 cut(s) 590
MmeI TCCRAC 1 cut(s) 375
Mph1103I ATGCAT 1 cut(s) 987
MroI TCCGGA 1 cut(s) 996
MseI TTAA 6 cut(s) 534, 651, 1020, 1073, 1131, 1162
MspA1I CMGCKG 1 cut(s) 499
MspI CCGG 4 cut(s) 269, 323, 697, 997
MspR9I CCNGG 5 cut(s) 269, 604, 672, 697, 911
MvaI CCWGG 3 cut(s) 604, 672, 911
MvnI CGCG 2 cut(s) 294, 1114
MwoI GCNNNNNNNGC 3 cut(s) 736, 1132, 1141
NarI GGCGCC 1 cut(s) 590
NciI CCSGG 2 cut(s) 269, 697
NdeII GATC 1 cut(s) 667
NlaIII CATG 1 cut(s) 842
NlaIV GGNNCC 4 cut(s) 321, 438, 591, 694
NmeAIII GCCGAG 1 cut(s) 1130
NmuCI GTSAC 1 cut(s) 3
NsbI TGCGCA 1 cut(s) 387
NsiI ATGCAT 1 cut(s) 987
NspV TTCGAA 2 cut(s) 168, 207
PciSI GCTCTTC 1 cut(s) 47
PcsI WCGNNNNNNNCGW 3 cut(s) 189, 195, 213
PfeI GAWTC 3 cut(s) 598, 938, 1024
PflFI GACNNNGTC 2 cut(s) 182, 197
PkrI GCNGC 4 cut(s) 757, 760, 780, 799
PluTI GGCGCC 1 cut(s) 593
PpuMI RGGWCCY 1 cut(s) 692
Psp1406I AACGTT 1 cut(s) 1041
Psp5II RGGWCCY 1 cut(s) 692
Psp6I CCWGG 3 cut(s) 602, 670, 909
PspGI CCWGG 3 cut(s) 602, 670, 909
PspN4I GGNNCC 4 cut(s) 321, 438, 591, 694
PspPI GGNCC 1 cut(s) 692
PspPPI RGGWCCY 1 cut(s) 692
PsyI GACNNNGTC 2 cut(s) 182, 197
PvuII CAGCTG 1 cut(s) 499
RsaI GTAC 1 cut(s) 467
RsaNI GTAC 1 cut(s) 466
SapI GCTCTTC 1 cut(s) 47
SaqAI TTAA 6 cut(s) 534, 651, 1020, 1073, 1131, 1162
SatI GCNGC 4 cut(s) 756, 759, 779, 798
Sau3AI GATC 1 cut(s) 667
Sau96I GGNCC 1 cut(s) 692
ScrFI CCNGG 5 cut(s) 269, 604, 672, 697, 911
SduI GDGCHC 1 cut(s) 441
SfaNI GCATC 3 cut(s) 717, 809, 972
SfoI GGCGCC 1 cut(s) 591
SfuI TTCGAA 2 cut(s) 168, 207
SinI GGWCC 1 cut(s) 692
SmlI CTYRAG 1 cut(s) 1082
SmoI CTYRAG 1 cut(s) 1082
Sse9I AATT 7 cut(s) 110, 300, 313, 448, 454, 894, 1017
SsiI CCGC 2 cut(s) 798, 1114
SspDI GGCGCC 1 cut(s) 589
SspI AATATT 1 cut(s) 812
SspMI CTAG 1 cut(s) 768
StyD4I CCNGG 5 cut(s) 267, 602, 670, 695, 909
TaaI ACNGT 3 cut(s) 352, 656, 880
TaiI ACGT 2 cut(s) 186, 1044
TaqI TCGA 6 cut(s) 168, 207, 222, 255, 407, 414
TasI AATT 7 cut(s) 110, 300, 313, 448, 454, 894, 1017
TatI WGTACW 1 cut(s) 465
TauI GCSGC 1 cut(s) 800
TfiI GAWTC 3 cut(s) 598, 938, 1024
Tru1I TTAA 6 cut(s) 534, 651, 1020, 1073, 1131, 1162
Tru9I TTAA 6 cut(s) 534, 651, 1020, 1073, 1131, 1162
TscAI CASTG 3 cut(s) 357, 513, 661
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 3 cut(s) 755, 758, 778
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 2 cut(s) 561, 855
TspRI CASTG 3 cut(s) 357, 513, 661
Tth111I GACNNNGTC 2 cut(s) 182, 197
VpaK11BI GGWCC 1 cut(s) 692
XapI RAATTY 4 cut(s) 110, 313, 448, 454
XspI CTAG 1 cut(s) 768
Zsp2I ATGCAT 1 cut(s) 987
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.