Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001128

Physical Location & Seq

Genomic Coordinates Reverse (-)

3789909 .. 3795831

Gene Structure 5923 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG022000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGCTTCTGCCACCTCTAGTAAATGGTTGCCCCTTCACACTCTTGCCGTATCAGGAGAATATTACATTACGCACGCTTTATCAAAACATGAAGCTGATGTTAATGCTGCGGATAAGGATGATTGGACTGTTCTTGACAAGGCAATTATTGGTAAAAACCAGGCCATTACAGACTATCTTCTCAGAGATTCGGCTAATCCATTGTTCGTGATAAACGGGTTGGAAGTTTATAGCCGGGTGCATCTCCTAAAGTGGAGAAAAGCTTTCTTCGTTTATGATAAAGCAAATATCAGTGACGGATATGCTTGTGCATTTGTTGACGTGGAATTGCAGGCCAGGAGTTTTAGCTTTGGCATGCCAACACCAGATATTGCAGGAATATTGGAGAACTGCAATTCCAAGAATTTTTTGCTTTGGAACGTGTGGGGTAGTGAAATTTTAGACAGAAGCATGTCAGAGACCAGATATTGCAGGAATATTTTAGAAGGCGTGCTTGCCGGTGCCATCCTCGATCCTGAGGATGAAGTAGCGCGACGATTTGAGCACTGTCTTGACGGAGGTCGCTGGAATTTGGATCCTCCAGTCAGATCTTGCACTGGTCCTTGCACAACCTTTTCCGCTCTCGGCGAGCTTCTCGTCACTGTTGGCTGCATCACTGACTTTGATGAGTACCTCTCGGATGTGGAGGCAAACAATCGAAAGGTGAAAGGGTATGGTAGGAATTATACATTCATTGAGACCAGATGGAAGAAGCTCAGAGTTGGTGATCTTGTCAAGGTGCACAAGGATGAGTACTTTCTTGCTGATCTGCTTTTGCTTTCATCAATCTATGAGGATGGCATTTGCTATATGGAAACTATGAACCTTGATGGAGAAACAAATTTAAAATTGAACCATGCACTAGAGGCGACATCCCATCTTCATGATGAAAATTCCTTGGAAAGATTTAGGGCAGTGATCAAGTGTGAGGACCCAAATAAAATTCTATATTCATTTGTTGGGACTTTGTTCTATAACGGCAGAGAACACCCACTTTCCTTGCAACAGATGCTGAAAAATACAGAATATGTCCATGGATTTGTTGTTTTCACTGGCCATAACACAGAAGTGTGGCAAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004012 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006900 GO:0006996 GO:0008150 GO:0009987 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031984 GO:0033036 GO:0034204 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045332 GO:0048193 GO:0048194 GO:0051179 GO:0051234 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0071944 GO:0097035 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase E1-E2_ATPase PhoLip_ATPase_C PhoLip_ATPase_N

Protein Analysis

373

Amino Acids

42.37

Weight (kDa)

5.27

Isoelectric Point (pI)

39.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66055 AT5G66055
fragaria_vesca	FvH4_1g10990 FvH4_1g10990
malus_domestica	MD15G1236900.v1.1
prunus_persica	Prupe.7G175600_v2.0.a1
pyrus_communis	pycom15g21070
rosa_chinensis	RchiOBHm_Chr1g0316921 RchiOBHm_Chr1g0316981 RchiOBHm_Chr2g0098251 RchiOBHm_Chr2g0145411 RchiOBHm_Chr4g0390291 RchiOBHm_Chr5g0073551
rosa_laevigata	RLG00000001656 RLG00000016779 RLG00000027817 RLG00000030637 RLG00000032089
rosa_multiflora	Rmu_co8173478.1_g000001 Rmu_sc0000104.1_g000031 Rmu_sc0000712.1_g000024 Rmu_sc0001298.1_g000058 Rmu_sc0002048.1_g000015 Rmu_sc0002398.1_g000019 Rmu_sc0004138.1_g000005 Rmu_sc0007472.1_g000006 Rmu_sc0009922.1_g000006
rosa_roxburghii	Rroxscaffold_2G00094620 Rroxscaffold_2G00144120
rosa_rugosa	Rorug02G0071600 Rorug02G0547800 Rorug04G0008500 Rorug04G0008600 Rorug04G0008600 Rorug04G0208000 Rorug05G0455100.1
rosa_samantha	Rh1AG024600 Rh1AG024700 Rh1CG022000 Rh1CG022900 Rh1DG021700 Rh2AG118600 Rh2BG121700 Rh2BG300700 Rh2BG456300 Rh2CG123300 Rh2CG279400 Rh2DG123300 Rh2DG466200 Rh4AG245100 Rh4BG023700 Rh4BG025500 Rh4BG250300 Rh4DG100600 Rh5DG257900 Rh6AG184700
rosa_wichuraiana	Rw1G001670 Rw2G009310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	500
AccBSI	CCGCTC	1 cut(s)	620
AccII	CGCG	1 cut(s)	532
AciI	CCGC	2 cut(s)	110, 618
AclWI	GGATC	3 cut(s)	506, 569, 582
AcoI	YGGCCR	1 cut(s)	1093
AcsI	RAATTY	6 cut(s)	403, 435, 568, 880, 931, 981
AfaI	GTAC	2 cut(s)	671, 794
AflIII	ACRYGT	1 cut(s)	420
AgsI	TTSAA	1 cut(s)	892
AjiI	CACGTC	1 cut(s)	322
AjnI	CCWGG	2 cut(s)	159, 335
AleI	CACNNNNGTG	1 cut(s)	1106
AloI	GAACNNNNNNTCC	2 cut(s)	380, 412
AluBI	AGCT	5 cut(s)	95, 263, 348, 631, 754
AluI	AGCT	5 cut(s)	95, 263, 348, 631, 754
Alw21I	GWGCWC	2 cut(s)	546, 783
Alw26I	GTCTC	2 cut(s)	452, 731
Alw44I	GTGCAC	1 cut(s)	779
AlwI	GGATC	3 cut(s)	506, 569, 582
AlwNI	CAGNNNCTG	1 cut(s)	1051
AoxI	GGCC	3 cut(s)	162, 333, 1093
ApaLI	GTGCAC	1 cut(s)	779
ApeKI	GCWGC	2 cut(s)	107, 648
ApoI	RAATTY	6 cut(s)	403, 435, 568, 880, 931, 981
AspLEI	GCGC	1 cut(s)	532
AspS9I	GGNCC	2 cut(s)	599, 970
AsuC2I	CCSGG	1 cut(s)	236
AsuHPI	GGTGA	2 cut(s)	715, 776
AvaII	GGWCC	2 cut(s)	599, 970
AxyI	CCTNAGG	1 cut(s)	516
BaeGI	GKGCMC	1 cut(s)	783
BalI	TGGCCA	1 cut(s)	1095
BamHI	GGATCC	1 cut(s)	574
BanI	GGYRCC	1 cut(s)	500
Bbv12I	GWGCWC	2 cut(s)	546, 783
BbvI	GCAGC	2 cut(s)	94, 635
BccI	CCATC	5 cut(s)	512, 738, 830, 863, 924
BceAI	ACGGC	2 cut(s)	32, 1033
BciT130I	CCWGG	2 cut(s)	161, 337
BclI	TGATCA	1 cut(s)	957
BcnI	CCSGG	1 cut(s)	236
BcoDI	GTCTC	2 cut(s)	452, 731
BfaI	CTAG	2 cut(s)	18, 902
BglII	AGATCT	1 cut(s)	587
BisI	GCNGC	2 cut(s)	108, 649
BlsI	GCNGC	2 cut(s)	109, 650
BmcAI	AGTACT	1 cut(s)	794
Bme1390I	CCNGG	3 cut(s)	161, 236, 337
Bme18I	GGWCC	2 cut(s)	599, 970
BmgBI	CACGTC	1 cut(s)	322
BmgT120I	GGNCC	2 cut(s)	599, 970
BmiI	GGNNCC	3 cut(s)	502, 576, 972
BmrFI	CCNGG	3 cut(s)	161, 236, 337
BmsI	GCATC	3 cut(s)	250, 660, 1038
BoxI	GACNNNNGTC	1 cut(s)	558
BplI	GAGNNNNNCTC	2 cut(s)	659, 691
BpmI	CTGGAG	1 cut(s)	564
BpuMI	CCSGG	1 cut(s)	236
BsaI	GGTCTC	2 cut(s)	452, 731
BsaJI	CCNNGG	2 cut(s)	936, 1072
Bse118I	RCCGGY	1 cut(s)	497
Bse1I	ACTGG	3 cut(s)	581, 601, 1096
Bse21I	CCTNAGG	1 cut(s)	516
BseBI	CCWGG	2 cut(s)	161, 337
BseDI	CCNNGG	2 cut(s)	936, 1072
BseGI	GGATG	7 cut(s)	124, 504, 526, 685, 793, 841, 911
BseMII	CTCAG	3 cut(s)	196, 507, 769
BseNI	ACTGG	3 cut(s)	581, 601, 1096
BseSI	GKGCMC	1 cut(s)	783
BseXI	GCAGC	2 cut(s)	94, 635
Bsh1236I	CGCG	1 cut(s)	532
BshFI	GGCC	3 cut(s)	164, 335, 1095
BshNI	GGYRCC	1 cut(s)	500
BsiHKAI	GWGCWC	2 cut(s)	546, 783
BsiSI	CCGG	2 cut(s)	235, 498
BslFI	GGGAC	1 cut(s)	1015
BsmAI	GTCTC	2 cut(s)	452, 731
BsmFI	GGGAC	1 cut(s)	1015
BsnI	GGCC	3 cut(s)	164, 335, 1095
Bso31I	GGTCTC	2 cut(s)	452, 731
Bsp1286I	GDGCHC	2 cut(s)	546, 783
Bsp143I	GATC	6 cut(s)	511, 574, 587, 766, 805, 957
Bsp19I	CCATGG	1 cut(s)	1072
BspACI	CCGC	2 cut(s)	110, 618
BspANI	GGCC	3 cut(s)	164, 335, 1095
BspCNI	CTCAG	3 cut(s)	195, 508, 768
BspFNI	CGCG	1 cut(s)	532
BspHI	TCATGA	1 cut(s)	922
BspLI	GGNNCC	3 cut(s)	502, 576, 972
BspPI	GGATC	3 cut(s)	506, 569, 582
BspT107I	GGYRCC	1 cut(s)	500
BspTNI	GGTCTC	2 cut(s)	452, 731
BsrBI	CCGCTC	1 cut(s)	620
BsrFI	RCCGGY	1 cut(s)	497
BsrI	ACTGG	3 cut(s)	581, 601, 1096
BssAI	RCCGGY	1 cut(s)	497
BssECI	CCNNGG	2 cut(s)	936, 1072
BssMI	GATC	6 cut(s)	511, 574, 587, 766, 805, 957
BssT1I	CCWWGG	2 cut(s)	936, 1072
Bst2UI	CCWGG	2 cut(s)	161, 337
Bst4CI	ACNGT	3 cut(s)	130, 548, 643
BstAPI	GCANNNNNTGC	1 cut(s)	1048
BstC8I	GCNNGC	6 cut(s)	75, 333, 356, 491, 495, 629
BstDEI	CTNAG	3 cut(s)	182, 516, 755
BstDSI	CCRYGG	1 cut(s)	1072
BstF5I	GGATG	7 cut(s)	124, 504, 526, 685, 793, 841, 911
BstFNI	CGCG	1 cut(s)	532
BstHHI	GCGC	1 cut(s)	532
BstKTI	GATC	6 cut(s)	514, 577, 590, 769, 808, 960
BstMAI	GTCTC	2 cut(s)	452, 731
BstMBI	GATC	6 cut(s)	511, 574, 587, 766, 805, 957
BstMWI	GCNNNNNNNGC	2 cut(s)	905, 1048
BstNI	CCWGG	2 cut(s)	161, 337
BstNSI	RCATGY	2 cut(s)	358, 454
BstPAI	GACNNNNGTC	1 cut(s)	558
BstSCI	CCNGG	3 cut(s)	159, 234, 335
BstSLI	GKGCMC	1 cut(s)	783
BstUI	CGCG	1 cut(s)	532
BstV1I	GCAGC	2 cut(s)	94, 635
BstX2I	RGATCY	2 cut(s)	574, 587
BstYI	RGATCY	2 cut(s)	574, 587
Bsu36I	CCTNAGG	1 cut(s)	516
BsuRI	GGCC	3 cut(s)	164, 335, 1095
BtgI	CCRYGG	1 cut(s)	1072
BtrI	CACGTC	1 cut(s)	322
BtsCI	GGATG	7 cut(s)	124, 504, 526, 685, 793, 841, 911
BtsI	GCAGTG	1 cut(s)	960
BtsIMutI	CAGTG	7 cut(s)	298, 544, 594, 639, 654, 960, 1089
Cac8I	GCNNGC	6 cut(s)	75, 333, 356, 491, 495, 629
CaiI	CAGNNNCTG	1 cut(s)	1051
CciI	TCATGA	1 cut(s)	922
CfoI	GCGC	1 cut(s)	532
Cfr10I	RCCGGY	1 cut(s)	497
Cfr13I	GGNCC	2 cut(s)	599, 970
Csp6I	GTAC	2 cut(s)	670, 793
CspCI	CAANNNNNGTGG	2 cut(s)	1020, 1055
CviAII	CATG	6 cut(s)	89, 355, 451, 896, 923, 1073
CviQI	GTAC	2 cut(s)	670, 793
DdeI	CTNAG	3 cut(s)	182, 516, 755
DpnI	GATC	6 cut(s)	513, 576, 589, 768, 807, 959
DpnII	GATC	6 cut(s)	511, 574, 587, 766, 805, 957
DraI	TTTAAA	1 cut(s)	885
EaeI	YGGCCR	1 cut(s)	1093
Eco130I	CCWWGG	2 cut(s)	936, 1072
Eco31I	GGTCTC	2 cut(s)	452, 731
Eco47I	GGWCC	2 cut(s)	599, 970
Eco81I	CCTNAGG	1 cut(s)	516
EcoO109I	RGGNCCY	1 cut(s)	970
EcoRII	CCWGG	2 cut(s)	159, 335
EcoT14I	CCWWGG	2 cut(s)	936, 1072
ErhI	CCWWGG	2 cut(s)	936, 1072
FaeI	CATG	6 cut(s)	92, 358, 454, 899, 926, 1076
FalI	AAGNNNNNCTT	2 cut(s)	477, 509
FaqI	GGGAC	1 cut(s)	1015
FatI	CATG	6 cut(s)	88, 354, 450, 895, 922, 1072
FbaI	TGATCA	1 cut(s)	957
Fnu4HI	GCNGC	2 cut(s)	108, 649
FokI	GGATG	7 cut(s)	131, 491, 533, 692, 800, 848, 898
Fsp4HI	GCNGC	2 cut(s)	108, 649
FspBI	CTAG	2 cut(s)	18, 902
GlaI	GCGC	1 cut(s)	531
GluI	GCNGC	2 cut(s)	108, 649
GsuI	CTGGAG	1 cut(s)	564
HaeIII	GGCC	3 cut(s)	164, 335, 1095
HapII	CCGG	2 cut(s)	235, 498
HhaI	GCGC	1 cut(s)	532
Hin1II	CATG	6 cut(s)	92, 358, 454, 899, 926, 1076
Hin6I	GCGC	1 cut(s)	530
HinP1I	GCGC	1 cut(s)	530
HincII	GTYRAC	1 cut(s)	319
HindII	GTYRAC	1 cut(s)	319
HindIII	AAGCTT	1 cut(s)	261
HinfI	GANTC	1 cut(s)	188
HpaII	CCGG	2 cut(s)	235, 498
HphI	GGTGA	2 cut(s)	715, 776
Hpy166II	GTNNAC	2 cut(s)	319, 781
Hpy188I	TCNGA	5 cut(s)	185, 457, 587, 679, 758
Hpy188III	TCNNGA	6 cut(s)	54, 134, 208, 515, 551, 923
Hpy8I	GTNNAC	2 cut(s)	319, 781
Hpy99I	CGWCG	1 cut(s)	537
HpyAV	CCTTC	2 cut(s)	44, 479
HpyCH4III	ACNGT	3 cut(s)	130, 548, 643
HpyCH4IV	ACGT	2 cut(s)	321, 420
HpyF10VI	GCNNNNNNNGC	2 cut(s)	905, 1048
HpyF3I	CTNAG	3 cut(s)	182, 516, 755
HpySE526I	ACGT	2 cut(s)	321, 420
Hsp92II	CATG	6 cut(s)	92, 358, 454, 899, 926, 1076
HspAI	GCGC	1 cut(s)	530
Ksp22I	TGATCA	1 cut(s)	957
Kzo9I	GATC	6 cut(s)	511, 574, 587, 766, 805, 957
Lsp1109I	GCAGC	2 cut(s)	94, 635
LweI	GCATC	3 cut(s)	250, 660, 1038
MaeI	CTAG	2 cut(s)	18, 902
MaeII	ACGT	2 cut(s)	321, 420
MaeIII	GTNAC	2 cut(s)	293, 637
MalI	GATC	6 cut(s)	513, 576, 589, 768, 807, 959
MbiI	CCGCTC	1 cut(s)	620
MboI	GATC	6 cut(s)	511, 574, 587, 766, 805, 957
MboII	GAAGA	4 cut(s)	170, 259, 760, 911
MflI	RGATCY	2 cut(s)	574, 587
MhlI	GDGCHC	2 cut(s)	546, 783
MlsI	TGGCCA	1 cut(s)	1095
MluNI	TGGCCA	1 cut(s)	1095
MmeI	TCCRAC	1 cut(s)	201
Mox20I	TGGCCA	1 cut(s)	1095
MscI	TGGCCA	1 cut(s)	1095
MseI	TTAA	2 cut(s)	102, 884
MslI	CAYNNNNRTG	3 cut(s)	786, 921, 1106
Msp20I	TGGCCA	1 cut(s)	1095
MspI	CCGG	2 cut(s)	235, 498
MspR9I	CCNGG	3 cut(s)	161, 236, 337
MvaI	CCWGG	2 cut(s)	161, 337
MvnI	CGCG	1 cut(s)	532
MwoI	GCNNNNNNNGC	2 cut(s)	905, 1048
NciI	CCSGG	1 cut(s)	236
NcoI	CCATGG	1 cut(s)	1072
NdeII	GATC	6 cut(s)	511, 574, 587, 766, 805, 957
NlaIII	CATG	6 cut(s)	92, 358, 454, 899, 926, 1076
NlaIV	GGNNCC	3 cut(s)	502, 576, 972
NmeAIII	GCCGAG	1 cut(s)	603
NmuCI	GTSAC	2 cut(s)	293, 637
NspI	RCATGY	2 cut(s)	358, 454
OliI	CACNNNNGTG	1 cut(s)	1106
PaeI	GCATGC	1 cut(s)	358
PagI	TCATGA	1 cut(s)	922
PfeI	GAWTC	1 cut(s)	188
PkrI	GCNGC	2 cut(s)	109, 650
PpuMI	RGGWCCY	1 cut(s)	970
PshAI	GACNNNNGTC	1 cut(s)	558
Psp5II	RGGWCCY	1 cut(s)	970
Psp6I	CCWGG	2 cut(s)	159, 335
PspGI	CCWGG	2 cut(s)	159, 335
PspN4I	GGNNCC	3 cut(s)	502, 576, 972
PspPI	GGNCC	2 cut(s)	599, 970
PspPPI	RGGWCCY	1 cut(s)	970
PstNI	CAGNNNCTG	1 cut(s)	1051
PsuI	RGATCY	2 cut(s)	574, 587
RsaI	GTAC	2 cut(s)	671, 794
RsaNI	GTAC	2 cut(s)	670, 793
RseI	CAYNNNNRTG	3 cut(s)	786, 921, 1106
SaqAI	TTAA	2 cut(s)	102, 884
SatI	GCNGC	2 cut(s)	108, 649
Sau3AI	GATC	6 cut(s)	511, 574, 587, 766, 805, 957
Sau96I	GGNCC	2 cut(s)	599, 970
ScaI	AGTACT	1 cut(s)	794
ScrFI	CCNGG	3 cut(s)	161, 236, 337
SduI	GDGCHC	2 cut(s)	546, 783
SfaNI	GCATC	3 cut(s)	250, 660, 1038
SinI	GGWCC	2 cut(s)	599, 970
SmiMI	CAYNNNNRTG	3 cut(s)	786, 921, 1106
SphI	GCATGC	1 cut(s)	358
SsiI	CCGC	2 cut(s)	110, 618
SspI	AATATT	3 cut(s)	62, 381, 478
SspMI	CTAG	2 cut(s)	18, 902
StyD4I	CCNGG	3 cut(s)	159, 234, 335
StyI	CCWWGG	2 cut(s)	936, 1072
TaaI	ACNGT	3 cut(s)	130, 548, 643
TaiI	ACGT	2 cut(s)	324, 423
TaqI	TCGA	2 cut(s)	510, 697
TatI	WGTACW	1 cut(s)	792
TfiI	GAWTC	1 cut(s)	188
Tru1I	TTAA	2 cut(s)	102, 884
Tru9I	TTAA	2 cut(s)	102, 884
TscAI	CASTG	7 cut(s)	298, 551, 601, 646, 661, 960, 1096
TseFI	GTSAC	2 cut(s)	293, 637
TseI	GCWGC	2 cut(s)	107, 648
Tsp45I	GTSAC	2 cut(s)	293, 637
TspDTI	ATGAA	8 cut(s)	105, 537, 721, 810, 875, 911, 942, 981
TspGWI	ACGGA	2 cut(s)	312, 570
TspRI	CASTG	7 cut(s)	298, 551, 601, 646, 661, 960, 1096
VneI	GTGCAC	1 cut(s)	779
VpaK11BI	GGWCC	2 cut(s)	599, 970
XapI	RAATTY	6 cut(s)	403, 435, 568, 880, 931, 981
XceI	RCATGY	2 cut(s)	358, 454
XspI	CTAG	2 cut(s)	18, 902
ZrmI	AGTACT	1 cut(s)	794

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.