Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001128

Physical Location & Seq

Genomic Coordinates Reverse (-)

5588639 .. 5609194

Gene Structure 20556 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0071600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGCCTGTTAATTTTGCCACAATCACTTCAAATTTCAAGCAGAAGGTTTCTGTGCTTGATAACTCTGGGAAGCCAGTCCTTGCAGCATTTGACGGTTCAAACCCCTGGTGCGCCCTGCTAGAAGAAGTGGTCAGTAAAGCTTATGGAACACTTGGTAAGCCTGAGATTTGTCCTGCTTCAACAGATGCTCACTATGTCCAGCTACAAGGCCTTCCAGCAATTGGATTCTCTCCTATGGCCAACACTCCTATTATGCTCCATGACCATAACAAGGTCGTGACTGTTGGAAGATTCCAAAATGGTGGTGCATTCAGTGTTATTCCAGATTCTGCTGAACAAAGGGTTGAAGAGGTTGAACATGTGGTAAGGGAAGAGAAGTTGAGGGAAGCATATGAGCTTATCGAGATATATTGCGAACTTATTGCGGCACAATTGCCAATGTTTGAGTCGCAGAAGAACTGCCTAATTGATCTGGAGGAAGCAGTATCAAGTGTAATTTTTGCATCTCCTAGATGTGCGGACGTACCAGAACTCATGGATATCCACAAGCATTTCACAGCAAAATATGGAAAGGAGTTCATCTCTGCAGCTGTTGAACTGCGCCCAGATAGTGGTGTAAGCCGCATGGTAATAGAAAAATTATCCACCAAATCACCTGATGTCAAATGGGATCCCGAGGCATTTGAAGAGAAGCCTCCTGAGGACCTTCTGAACGGACCAAATACTTTTGGCATGGCCAGTCTAGATTCTGCTCCACCACCACCTACTCATGATGTCTGTGGACCTCCTAATATCCAAGTTATGCCTAATAGCATGGCTAATAAAGCTCATGTGGAAGCTCCCCCTGGTTCCCTTCCACCTGATAAACCTCCTAATGCTGAAGTTCCACACAGAAATTATGAGTATCATGATGGACCGATGAACTCTAATGAGCAGAGTGCAAGATCATCACCTTACTTGGAGGATTCTGCTTCTACAAATGTCTCTGCCAACAAAGCAACCACATCTACCGCATTTCATCCAGAAACGGCATCTTCAGGATGCAGAAGTGATCGAATGGAAATGCATGGGGATGATAATTCTTCGGGCAGGCAGAACTGGAACATGCAATTTAAGGATGCTACCTCTGCAGCACAGGCAGCTGCTGAATCAGCACAACGAGCAGGCATCAAACCTGAGAAAATTCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Ank_2 Ank_4 Ank_5 RRM_1

Protein Analysis

396

Amino Acids

43.06

Weight (kDa)

5.01

Isoelectric Point (pI)

48.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ist1	PF03398	111 - 222	4.2e-35	Regulator of Vps4 activity in the MVB pathway

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66055 AT5G66055
fragaria_vesca	FvH4_1g10990 FvH4_1g10990
malus_domestica	MD15G1236900.v1.1
prunus_persica	Prupe.7G175600_v2.0.a1
pyrus_communis	pycom15g21070
rosa_chinensis	RchiOBHm_Chr1g0316921 RchiOBHm_Chr1g0316981 RchiOBHm_Chr2g0098251 RchiOBHm_Chr2g0145411 RchiOBHm_Chr4g0390291 RchiOBHm_Chr5g0073551
rosa_laevigata	RLG00000001656 RLG00000016779 RLG00000027817 RLG00000030637 RLG00000032089
rosa_multiflora	Rmu_co8173478.1_g000001 Rmu_sc0000104.1_g000031 Rmu_sc0000712.1_g000024 Rmu_sc0001298.1_g000058 Rmu_sc0002048.1_g000015 Rmu_sc0002398.1_g000019 Rmu_sc0004138.1_g000005 Rmu_sc0007472.1_g000006 Rmu_sc0009922.1_g000006
rosa_roxburghii	Rroxscaffold_2G00094620 Rroxscaffold_2G00144120
rosa_rugosa	Rorug02G0071600 Rorug02G0547800 Rorug04G0008500 Rorug04G0008600 Rorug04G0008600 Rorug04G0208000 Rorug05G0455100.1
rosa_samantha	Rh1AG024600 Rh1AG024700 Rh1CG022000 Rh1CG022900 Rh1DG021700 Rh2AG118600 Rh2BG121700 Rh2BG300700 Rh2BG456300 Rh2CG123300 Rh2CG279400 Rh2DG123300 Rh2DG466200 Rh4AG245100 Rh4BG023700 Rh4BG025500 Rh4BG250300 Rh4DG100600 Rh5DG257900 Rh6AG184700
rosa_wichuraiana	Rw1G001670 Rw2G009310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	221, 611
AciI	CCGC	4 cut(s)	425, 518, 622, 1011
AclWI	GGATC	2 cut(s)	665, 678
AcoI	YGGCCR	2 cut(s)	237, 735
AcsI	RAATTY	2 cut(s)	31, 1182
AcuI	CTGAAG	2 cut(s)	900, 1020
AfaI	GTAC	1 cut(s)	525
AfiI	CCNNNNNNNGG	3 cut(s)	221, 271, 611
AflIII	ACRYGT	1 cut(s)	358
AgsI	TTSAA	8 cut(s)	30, 37, 99, 180, 347, 356, 596, 686
AjnI	CCWGG	2 cut(s)	104, 844
AluBI	AGCT	7 cut(s)	140, 202, 397, 590, 827, 839, 1142
AluI	AGCT	7 cut(s)	140, 202, 397, 590, 827, 839, 1142
Alw26I	GTCTC	1 cut(s)	988
AlwI	GGATC	2 cut(s)	665, 678
AlwNI	CAGNNNCTG	2 cut(s)	329, 1145
Ama87I	CYCGRG	1 cut(s)	674
AoxI	GGCC	3 cut(s)	208, 237, 735
ApeKI	GCWGC	5 cut(s)	83, 587, 1130, 1139, 1142
ApoI	RAATTY	2 cut(s)	31, 1182
AspLEI	GCGC	2 cut(s)	113, 603
AspS9I	GGNCC	4 cut(s)	703, 716, 782, 914
AsuHPI	GGTGA	2 cut(s)	645, 942
AvaI	CYCGRG	1 cut(s)	674
AvaII	GGWCC	4 cut(s)	703, 716, 782, 914
AxyI	CCTNAGG	1 cut(s)	699
BalI	TGGCCA	2 cut(s)	239, 737
BamHI	GGATCC	1 cut(s)	670
BbvI	GCAGC	5 cut(s)	95, 599, 1129, 1142, 1151
BccI	CCATC	1 cut(s)	905
BceAI	ACGGC	1 cut(s)	1044
BcgI	CGANNNNNNTGC	2 cut(s)	404, 438
BciT130I	CCWGG	2 cut(s)	106, 846
BcoDI	GTCTC	1 cut(s)	988
BfaI	CTAG	3 cut(s)	119, 510, 743
BfmI	CTRYAG	2 cut(s)	585, 1128
BisI	GCNGC	7 cut(s)	84, 426, 588, 622, 1131, 1140, 1143
BlsI	GCNGC	7 cut(s)	85, 427, 589, 623, 1132, 1141, 1144
Bme1390I	CCNGG	2 cut(s)	106, 846
Bme18I	GGWCC	4 cut(s)	703, 716, 782, 914
BmeT110I	CYCGRG	1 cut(s)	674
BmgT120I	GGNCC	4 cut(s)	703, 716, 782, 914
BmiI	GGNNCC	2 cut(s)	672, 850
BmrFI	CCNGG	2 cut(s)	106, 846
BmsI	GCATC	6 cut(s)	175, 512, 1031, 1040, 1108, 1176
BplI	GAGNNNNNCTC	2 cut(s)	566, 598
BpmI	CTGGAG	1 cut(s)	494
BsaJI	CCNNGG	3 cut(s)	104, 675, 844
Bsc4I	CCNNNNNNNGG	3 cut(s)	221, 271, 611
Bse1I	ACTGG	3 cut(s)	74, 738, 1103
Bse21I	CCTNAGG	1 cut(s)	699
BseBI	CCWGG	2 cut(s)	106, 846
BseDI	CCNNGG	3 cut(s)	104, 675, 844
BseGI	GGATG	4 cut(s)	1018, 1046, 1078, 1123
BseLI	CCNNNNNNNGG	3 cut(s)	221, 271, 611
BseMII	CTCAG	3 cut(s)	153, 690, 1167
BseNI	ACTGG	3 cut(s)	74, 738, 1103
BseXI	GCAGC	5 cut(s)	95, 599, 1129, 1142, 1151
BshFI	GGCC	3 cut(s)	210, 239, 737
BsiHKCI	CYCGRG	1 cut(s)	674
BslI	CCNNNNNNNGG	3 cut(s)	221, 271, 611
BsmAI	GTCTC	1 cut(s)	988
BsmI	GAATGC	1 cut(s)	308
BsnI	GGCC	3 cut(s)	210, 239, 737
BsoBI	CYCGRG	1 cut(s)	674
Bsp143I	GATC	4 cut(s)	469, 670, 944, 1051
BspACI	CCGC	4 cut(s)	425, 518, 622, 1011
BspANI	GGCC	3 cut(s)	210, 239, 737
BspCNI	CTCAG	3 cut(s)	154, 691, 1168
BspHI	TCATGA	2 cut(s)	769, 907
BspLI	GGNNCC	2 cut(s)	672, 850
BspMAI	CTGCAG	2 cut(s)	589, 1132
BspPI	GGATC	2 cut(s)	665, 678
BsrI	ACTGG	3 cut(s)	74, 738, 1103
BssECI	CCNNGG	3 cut(s)	104, 675, 844
BssMI	GATC	4 cut(s)	469, 670, 944, 1051
Bst2UI	CCWGG	2 cut(s)	106, 846
Bst4CI	ACNGT	2 cut(s)	95, 283
Bst6I	CTCTTC	3 cut(s)	342, 366, 681
BstC8I	GCNNGC	2 cut(s)	1091, 1165
BstDEI	CTNAG	3 cut(s)	162, 699, 1176
BstF5I	GGATG	4 cut(s)	1018, 1046, 1078, 1123
BstHHI	GCGC	2 cut(s)	113, 603
BstKTI	GATC	4 cut(s)	472, 673, 947, 1054
BstMAI	GTCTC	1 cut(s)	988
BstMBI	GATC	4 cut(s)	469, 670, 944, 1051
BstMWI	GCNNNNNNNGC	7 cut(s)	824, 995, 1127, 1136, 1139, 1151, 1160
BstNI	CCWGG	2 cut(s)	106, 846
BstNSI	RCATGY	2 cut(s)	362, 1108
BstSCI	CCNGG	2 cut(s)	104, 844
BstSFI	CTRYAG	2 cut(s)	585, 1128
BstV1I	GCAGC	5 cut(s)	95, 599, 1129, 1142, 1151
BstX2I	RGATCY	1 cut(s)	670
BstXI	CCANNNNNNTGG	1 cut(s)	302
BstYI	RGATCY	1 cut(s)	670
Bsu36I	CCTNAGG	1 cut(s)	699
BsuRI	GGCC	3 cut(s)	210, 239, 737
BtsCI	GGATG	4 cut(s)	1018, 1046, 1078, 1123
BtsIMutI	CAGTG	1 cut(s)	319
Cac8I	GCNNGC	2 cut(s)	1091, 1165
CaiI	CAGNNNCTG	2 cut(s)	329, 1145
CciI	TCATGA	2 cut(s)	769, 907
CfoI	GCGC	2 cut(s)	113, 603
Cfr13I	GGNCC	4 cut(s)	703, 716, 782, 914
Csp6I	GTAC	1 cut(s)	524
CviQI	GTAC	1 cut(s)	524
DdeI	CTNAG	3 cut(s)	162, 699, 1176
DpnI	GATC	4 cut(s)	471, 672, 946, 1053
DpnII	GATC	4 cut(s)	469, 670, 944, 1051
EaeI	YGGCCR	2 cut(s)	237, 735
Eam1104I	CTCTTC	3 cut(s)	342, 366, 681
EarI	CTCTTC	3 cut(s)	342, 366, 681
Eco147I	AGGCCT	1 cut(s)	210
Eco32I	GATATC	1 cut(s)	541
Eco47I	GGWCC	4 cut(s)	703, 716, 782, 914
Eco57I	CTGAAG	2 cut(s)	900, 1020
Eco81I	CCTNAGG	1 cut(s)	699
Eco88I	CYCGRG	1 cut(s)	674
EcoO109I	RGGNCCY	1 cut(s)	703
EcoRII	CCWGG	2 cut(s)	104, 844
EcoRV	GATATC	1 cut(s)	541
EcoT22I	ATGCAT	1 cut(s)	1068
FauNDI	CATATG	1 cut(s)	391
Fnu4HI	GCNGC	7 cut(s)	84, 426, 588, 622, 1131, 1140, 1143
FokI	GGATG	4 cut(s)	1005, 1053, 1085, 1130
Fsp4HI	GCNGC	7 cut(s)	84, 426, 588, 622, 1131, 1140, 1143
FspBI	CTAG	3 cut(s)	119, 510, 743
GlaI	GCGC	2 cut(s)	112, 602
GluI	GCNGC	7 cut(s)	84, 426, 588, 622, 1131, 1140, 1143
GsuI	CTGGAG	1 cut(s)	494
HaeIII	GGCC	3 cut(s)	210, 239, 737
HhaI	GCGC	2 cut(s)	113, 603
Hin6I	GCGC	2 cut(s)	111, 601
HinP1I	GCGC	2 cut(s)	111, 601
HindIII	AAGCTT	1 cut(s)	138
HinfI	GANTC	7 cut(s)	225, 291, 326, 446, 746, 965, 1148
HphI	GGTGA	2 cut(s)	645, 942
Hpy166II	GTNNAC	1 cut(s)	782
Hpy188I	TCNGA	1 cut(s)	711
Hpy8I	GTNNAC	1 cut(s)	782
HpyAV	CCTTC	4 cut(s)	37, 221, 716, 863
HpyCH4III	ACNGT	2 cut(s)	95, 283
HpyCH4IV	ACGT	1 cut(s)	522
HpyCH4V	TGCA	9 cut(s)	83, 308, 503, 587, 941, 1044, 1066, 1108, 1130
HpyF10VI	GCNNNNNNNGC	7 cut(s)	824, 995, 1127, 1136, 1139, 1151, 1160
HpyF3I	CTNAG	3 cut(s)	162, 699, 1176
HpySE526I	ACGT	1 cut(s)	522
HspAI	GCGC	2 cut(s)	111, 601
Kzo9I	GATC	4 cut(s)	469, 670, 944, 1051
LmnI	GCTCC	3 cut(s)	261, 757, 844
Lsp1109I	GCAGC	5 cut(s)	95, 599, 1129, 1142, 1151
LweI	GCATC	6 cut(s)	175, 512, 1031, 1040, 1108, 1176
MaeI	CTAG	3 cut(s)	119, 510, 743
MaeII	ACGT	1 cut(s)	522
MaeIII	GTNAC	1 cut(s)	277
MalI	GATC	4 cut(s)	471, 672, 946, 1053
MboI	GATC	4 cut(s)	469, 670, 944, 1051
MboII	GAAGA	8 cut(s)	134, 300, 359, 383, 466, 698, 1026, 1074
MfeI	CAATTG	2 cut(s)	219, 431
MflI	RGATCY	1 cut(s)	670
MlsI	TGGCCA	2 cut(s)	239, 737
MluNI	TGGCCA	2 cut(s)	239, 737
MlyI	GAGTC	1 cut(s)	455
MmeI	TCCRAC	1 cut(s)	265
Mox20I	TGGCCA	2 cut(s)	239, 737
Mph1103I	ATGCAT	1 cut(s)	1068
MscI	TGGCCA	2 cut(s)	239, 737
MseI	TTAA	2 cut(s)	9, 1113
MslI	CAYNNNNRTG	1 cut(s)	1071
Msp20I	TGGCCA	2 cut(s)	239, 737
MspA1I	CMGCKG	2 cut(s)	590, 1142
MspR9I	CCNGG	2 cut(s)	106, 846
MunI	CAATTG	2 cut(s)	219, 431
Mva1269I	GAATGC	1 cut(s)	308
MvaI	CCWGG	2 cut(s)	106, 846
MwoI	GCNNNNNNNGC	7 cut(s)	824, 995, 1127, 1136, 1139, 1151, 1160
NdeI	CATATG	1 cut(s)	391
NdeII	GATC	4 cut(s)	469, 670, 944, 1051
NlaIV	GGNNCC	2 cut(s)	672, 850
NmuCI	GTSAC	1 cut(s)	277
NsiI	ATGCAT	1 cut(s)	1068
NspI	RCATGY	2 cut(s)	362, 1108
PagI	TCATGA	2 cut(s)	769, 907
PceI	AGGCCT	1 cut(s)	210
PciI	ACATGT	1 cut(s)	358
PctI	GAATGC	1 cut(s)	308
PfeI	GAWTC	6 cut(s)	225, 291, 326, 746, 965, 1148
PflMI	CCANNNNNTGG	2 cut(s)	221, 611
PkrI	GCNGC	7 cut(s)	85, 427, 589, 623, 1132, 1141, 1144
PleI	GAGTC	1 cut(s)	454
PpsI	GAGTC	1 cut(s)	454
PpuMI	RGGWCCY	1 cut(s)	703
PscI	ACATGT	1 cut(s)	358
Psp5II	RGGWCCY	1 cut(s)	703
Psp6I	CCWGG	2 cut(s)	104, 844
PspGI	CCWGG	2 cut(s)	104, 844
PspN4I	GGNNCC	2 cut(s)	672, 850
PspPI	GGNCC	4 cut(s)	703, 716, 782, 914
PspPPI	RGGWCCY	1 cut(s)	703
PstI	CTGCAG	2 cut(s)	589, 1132
PstNI	CAGNNNCTG	2 cut(s)	329, 1145
PsuI	RGATCY	1 cut(s)	670
PvuII	CAGCTG	2 cut(s)	590, 1142
RsaI	GTAC	1 cut(s)	525
RsaNI	GTAC	1 cut(s)	524
RseI	CAYNNNNRTG	1 cut(s)	1071
SaqAI	TTAA	2 cut(s)	9, 1113
SatI	GCNGC	7 cut(s)	84, 426, 588, 622, 1131, 1140, 1143
Sau3AI	GATC	4 cut(s)	469, 670, 944, 1051
Sau96I	GGNCC	4 cut(s)	703, 716, 782, 914
SchI	GAGTC	1 cut(s)	455
ScrFI	CCNGG	2 cut(s)	106, 846
SfaNI	GCATC	6 cut(s)	175, 512, 1031, 1040, 1108, 1176
SfcI	CTRYAG	2 cut(s)	585, 1128
SinI	GGWCC	4 cut(s)	703, 716, 782, 914
SmiMI	CAYNNNNRTG	1 cut(s)	1071
SseBI	AGGCCT	1 cut(s)	210
SsiI	CCGC	4 cut(s)	425, 518, 622, 1011
SspMI	CTAG	3 cut(s)	119, 510, 743
StuI	AGGCCT	1 cut(s)	210
StyD4I	CCNGG	2 cut(s)	104, 844
TaaI	ACNGT	2 cut(s)	95, 283
TaiI	ACGT	1 cut(s)	525
TaqI	TCGA	2 cut(s)	402, 1054
TaqII	GACCGA	1 cut(s)	931
TauI	GCSGC	2 cut(s)	428, 624
TfiI	GAWTC	6 cut(s)	225, 291, 326, 746, 965, 1148
Tru1I	TTAA	2 cut(s)	9, 1113
Tru9I	TTAA	2 cut(s)	9, 1113
TscAI	CASTG	1 cut(s)	319
TseFI	GTSAC	1 cut(s)	277
TseI	GCWGC	5 cut(s)	83, 587, 1130, 1139, 1142
Tsp45I	GTSAC	1 cut(s)	277
TspDTI	ATGAA	3 cut(s)	568, 935, 1007
TspGWI	ACGGA	1 cut(s)	729
TspRI	CASTG	1 cut(s)	319
Van91I	CCANNNNNTGG	2 cut(s)	221, 611
VpaK11BI	GGWCC	4 cut(s)	703, 716, 782, 914
XapI	RAATTY	2 cut(s)	31, 1182
XbaI	TCTAGA	1 cut(s)	742
XceI	RCATGY	2 cut(s)	362, 1108
XspI	CTAG	3 cut(s)	119, 510, 743
Zsp2I	ATGCAT	1 cut(s)	1068

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.