Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001128

Physical Location & Seq

Genomic Coordinates Reverse (-)

10806326 .. 10806859

Gene Structure 534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032089

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGACGTCTTCTTCGAAGAAGGCGTGTTCAACCACCTTTCGGTTCAAGGGTCGAGAAGAACAAAAGGTGGTTGGAACTAATAAGGAATTTGAATTTGGAGGAGTACAAGCGTATAGAGAGGCCAAGTCGAACGAATTGAAGCCGCTGGTTTTGGATGAGCCTCAGAAGCTTAAGGAGGAGGATGAAGAGTCTGAAGGTTGTGATGGGTATGTGAGCGAGAGAATGGCACCTAAGAATCTGAGGTGGGCTGTTTATGGGAAGACTTTTCTCGTCGCGGGGGTTTCTACTCTTGCCGCCGCATCCTCTGCCATTGTTGGAGTAATGGGACTGAGAATGAGAGCGCTTTCCGTAACTATTCCTCTGACCTGCCATGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Ank_2 Ank_4 Ank_5 RRM_1

Protein Analysis

126

Amino Acids

13.67

Weight (kDa)

8.45

Isoelectric Point (pI)

38.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66055 AT5G66055
fragaria_vesca	FvH4_1g10990 FvH4_1g10990
malus_domestica	MD15G1236900.v1.1
prunus_persica	Prupe.7G175600_v2.0.a1
pyrus_communis	pycom15g21070
rosa_chinensis	RchiOBHm_Chr1g0316921 RchiOBHm_Chr1g0316981 RchiOBHm_Chr2g0098251 RchiOBHm_Chr2g0145411 RchiOBHm_Chr4g0390291 RchiOBHm_Chr5g0073551
rosa_laevigata	RLG00000001656 RLG00000016779 RLG00000027817 RLG00000030637 RLG00000032089
rosa_multiflora	Rmu_co8173478.1_g000001 Rmu_sc0000104.1_g000031 Rmu_sc0000712.1_g000024 Rmu_sc0001298.1_g000058 Rmu_sc0002048.1_g000015 Rmu_sc0002398.1_g000019 Rmu_sc0004138.1_g000005 Rmu_sc0007472.1_g000006 Rmu_sc0009922.1_g000006
rosa_roxburghii	Rroxscaffold_2G00094620 Rroxscaffold_2G00144120
rosa_rugosa	Rorug02G0071600 Rorug02G0547800 Rorug04G0008500 Rorug04G0008600 Rorug04G0008600 Rorug04G0208000 Rorug05G0455100.1
rosa_samantha	Rh1AG024600 Rh1AG024700 Rh1CG022000 Rh1CG022900 Rh1DG021700 Rh2AG118600 Rh2BG121700 Rh2BG300700 Rh2BG456300 Rh2CG123300 Rh2CG279400 Rh2DG123300 Rh2DG466200 Rh4AG245100 Rh4BG023700 Rh4BG025500 Rh4BG250300 Rh4DG100600 Rh5DG257900 Rh6AG184700
rosa_wichuraiana	Rw1G001670 Rw2G009310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	8
Acc36I	ACCTGC	1 cut(s)	374
AccB1I	GGYRCC	1 cut(s)	226
AccII	CGCG	1 cut(s)	275
AciI	CCGC	4 cut(s)	143, 275, 294, 297
AcsI	RAATTY	2 cut(s)	86, 92
AcuI	CTGAAG	1 cut(s)	213
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	105
AfeI	AGCGCT	1 cut(s)	342
AfiI	CCNNNNNNNGG	1 cut(s)	39
AflII	CTTAAG	1 cut(s)	170
AgsI	TTSAA	4 cut(s)	30, 46, 92, 139
AjuI	GAANNNNNNNTTGG	2 cut(s)	78, 110
AluBI	AGCT	1 cut(s)	169
AluI	AGCT	1 cut(s)	169
Aor51HI	AGCGCT	1 cut(s)	342
AoxI	GGCC	1 cut(s)	120
ApoI	RAATTY	2 cut(s)	86, 92
ArsI	GACNNNNNNTTYG	1 cut(s)	27
AspLEI	GCGC	1 cut(s)	343
AsuII	TTCGAA	1 cut(s)	14
BanI	GGYRCC	1 cut(s)	226
BbsI	GAAGAC	1 cut(s)	266
BccI	CCATC	1 cut(s)	197
BfoI	RGCGCY	1 cut(s)	344
BfrI	CTTAAG	1 cut(s)	170
BfuAI	ACCTGC	1 cut(s)	374
BisI	GCNGC	3 cut(s)	143, 294, 297
BlsI	GCNGC	3 cut(s)	144, 295, 298
BmiI	GGNNCC	1 cut(s)	228
BmsI	GCATC	1 cut(s)	308
BpiI	GAAGAC	1 cut(s)	266
Bpu14I	TTCGAA	1 cut(s)	14
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	370
Bsc4I	CCNNNNNNNGG	1 cut(s)	39
BseDI	CCNNGG	1 cut(s)	370
BseGI	GGATG	3 cut(s)	160, 187, 299
BseLI	CCNNNNNNNGG	1 cut(s)	39
BseMII	CTCAG	3 cut(s)	176, 230, 320
BseRI	GAGGAG	2 cut(s)	114, 191
Bsh1236I	CGCG	1 cut(s)	275
BshFI	GGCC	1 cut(s)	122
BshNI	GGYRCC	1 cut(s)	226
BslFI	GGGAC	1 cut(s)	339
BslI	CCNNNNNNNGG	1 cut(s)	39
BsmFI	GGGAC	1 cut(s)	339
BsnI	GGCC	1 cut(s)	122
Bsp119I	TTCGAA	1 cut(s)	14
Bsp19I	CCATGG	1 cut(s)	370
BspACI	CCGC	4 cut(s)	143, 275, 294, 297
BspANI	GGCC	1 cut(s)	122
BspCNI	CTCAG	3 cut(s)	175, 231, 321
BspFNI	CGCG	1 cut(s)	275
BspLI	GGNNCC	1 cut(s)	228
BspMI	ACCTGC	1 cut(s)	374
BspT104I	TTCGAA	1 cut(s)	14
BspT107I	GGYRCC	1 cut(s)	226
BspTI	CTTAAG	1 cut(s)	170
BssECI	CCNNGG	1 cut(s)	370
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	370
Bst6I	CTCTTC	1 cut(s)	180
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	1 cut(s)	170
BstAPI	GCANNNNNTGC	1 cut(s)	305
BstBI	TTCGAA	1 cut(s)	14
BstDEI	CTNAG	4 cut(s)	162, 231, 239, 329
BstDSI	CCRYGG	1 cut(s)	370
BstF5I	GGATG	3 cut(s)	160, 187, 299
BstFNI	CGCG	1 cut(s)	275
BstH2I	RGCGCY	1 cut(s)	344
BstHHI	GCGC	1 cut(s)	343
BstMWI	GCNNNNNNNGC	2 cut(s)	166, 305
BstUI	CGCG	1 cut(s)	275
BstV2I	GAAGAC	1 cut(s)	266
BsuRI	GGCC	1 cut(s)	122
BtgI	CCRYGG	1 cut(s)	370
BtsCI	GGATG	3 cut(s)	160, 187, 299
BveI	ACCTGC	1 cut(s)	374
CfoI	GCGC	1 cut(s)	343
Csp6I	GTAC	1 cut(s)	104
CviAII	CATG	1 cut(s)	371
CviJI	RGCY	5 cut(s)	122, 142, 160, 169, 248
CviKI_1	RGCY	5 cut(s)	122, 142, 160, 169, 248
CviQI	GTAC	1 cut(s)	104
DdeI	CTNAG	4 cut(s)	162, 231, 239, 329
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
Eco130I	CCWWGG	1 cut(s)	370
Eco47III	AGCGCT	1 cut(s)	342
Eco57I	CTGAAG	1 cut(s)	213
EcoT14I	CCWWGG	1 cut(s)	370
ErhI	CCWWGG	1 cut(s)	370
FaeI	CATG	1 cut(s)	374
FaiI	YATR	4 cut(s)	114, 210, 255, 372
FaqI	GGGAC	1 cut(s)	339
FatI	CATG	1 cut(s)	370
FauI	CCCGC	1 cut(s)	268
Fnu4HI	GCNGC	3 cut(s)	143, 294, 297
FokI	GGATG	3 cut(s)	167, 194, 286
Fsp4HI	GCNGC	3 cut(s)	143, 294, 297
GlaI	GCGC	1 cut(s)	342
GluI	GCNGC	3 cut(s)	143, 294, 297
HaeII	RGCGCY	1 cut(s)	344
HaeIII	GGCC	1 cut(s)	122
HhaI	GCGC	1 cut(s)	343
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	374
Hin6I	GCGC	1 cut(s)	341
HinP1I	GCGC	1 cut(s)	341
HindIII	AAGCTT	1 cut(s)	167
HinfI	GANTC	2 cut(s)	188, 235
Hpy188I	TCNGA	4 cut(s)	165, 193, 240, 363
Hpy188III	TCNNGA	1 cut(s)	53
Hpy99I	CGWCG	1 cut(s)	275
HpyAV	CCTTC	2 cut(s)	13, 188
HpyCH4IV	ACGT	1 cut(s)	5
HpyF10VI	GCNNNNNNNGC	2 cut(s)	166, 305
HpyF3I	CTNAG	4 cut(s)	162, 231, 239, 329
HpySE526I	ACGT	1 cut(s)	5
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	374
HspAI	GCGC	1 cut(s)	341
LpnPI	CCDG	1 cut(s)	131
LweI	GCATC	1 cut(s)	308
MaeII	ACGT	1 cut(s)	5
MaeIII	GTNAC	1 cut(s)	349
MboII	GAAGA	5 cut(s)	3, 28, 68, 197, 271
MluCI	AATT	3 cut(s)	86, 92, 134
MlyI	GAGTC	1 cut(s)	197
MmeI	TCCRAC	2 cut(s)	52, 295
MnlI	CCTC	8 cut(s)	92, 112, 169, 171, 172, 234, 313, 369
MseI	TTAA	1 cut(s)	171
MspA1I	CMGCKG	1 cut(s)	145
MspCI	CTTAAG	1 cut(s)	170
MvnI	CGCG	1 cut(s)	275
MwoI	GCNNNNNNNGC	2 cut(s)	166, 305
NcoI	CCATGG	1 cut(s)	370
NlaIII	CATG	1 cut(s)	374
NlaIV	GGNNCC	1 cut(s)	228
NspV	TTCGAA	1 cut(s)	14
PcsI	WCGNNNNNNNCGW	2 cut(s)	11, 20
PfeI	GAWTC	1 cut(s)	235
PkrI	GCNGC	3 cut(s)	144, 295, 298
PleI	GAGTC	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	196
PspN4I	GGNNCC	1 cut(s)	228
RsaI	GTAC	1 cut(s)	105
RsaNI	GTAC	1 cut(s)	104
SaqAI	TTAA	1 cut(s)	171
SatI	GCNGC	3 cut(s)	143, 294, 297
SchI	GAGTC	1 cut(s)	197
SetI	ASST	8 cut(s)	8, 38, 69, 171, 199, 232, 245, 368
SfaNI	GCATC	1 cut(s)	308
SfuI	TTCGAA	1 cut(s)	14
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
Sse9I	AATT	3 cut(s)	86, 92, 134
SsiI	CCGC	4 cut(s)	143, 275, 294, 297
StyI	CCWWGG	1 cut(s)	370
TaiI	ACGT	1 cut(s)	8
TaqI	TCGA	3 cut(s)	14, 52, 128
TasI	AATT	3 cut(s)	86, 92, 134
TatI	WGTACW	1 cut(s)	103
TauI	GCSGC	3 cut(s)	145, 296, 299
TfiI	GAWTC	1 cut(s)	235
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TspDTI	ATGAA	1 cut(s)	198
TspGWI	ACGGA	1 cut(s)	337
Vha464I	CTTAAG	1 cut(s)	170
XapI	RAATTY	2 cut(s)	86, 92
ZraI	GACGTC	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.