Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001128

Physical Location & Seq

Genomic Coordinates Forward (+)

64604298 .. 64609811

Gene Structure 5514 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG456300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGCTTGCGGGTGCCATCCTCGATCCTGAGGATGAAGTAGCGCGACGATTCGAGCACGGTCTTGACGGAGGTCGCTGGAATTCGGATCCTCCAGTCGGATCTCGCACCGGTCCTTGCACGACCTTTTCCGCTCTCGGTGAGCTTCTCGTCGCTGCTGGCTGCATCACTGACTTTGATGAGTATCGCTCGGATGTGGAGGCAAATAATCGAAAGGTGAAAGTGTATGGTAGGAATTATACATTCATTGAGACCAGATGGAAGAAGCTCAGAGTTGGTGAACTTGTCAAGGTGCACAAGGATGAGTACTTTCTTGTTGATCTGCTTTTGCTTTCATCAAGCTATGAGGATGGCATTTGCTATGTGGAAACTATGAACCTTGATGGAGAAACAAATTTAAAATTGAACAATGCACTGGAGGTGACATCCCATCTTCATGATGAAAATTCCTTGGAAAGATTTAGGGTAGTGATCAAGTGTGAGGACCCAAATAAAATTCTATATTCATTTGTTGGGACTTTGTCTATAACGGCAGAGAACACCTACTTTCCTTGCAACAGATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004012 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006900 GO:0006996 GO:0008150 GO:0009987 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031984 GO:0033036 GO:0034204 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045332 GO:0048193 GO:0048194 GO:0051179 GO:0051234 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0071944 GO:0097035 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase E1-E2_ATPase PhoLip_ATPase_C PhoLip_ATPase_N

Protein Analysis

187

Amino Acids

21.18

Weight (kDa)

4.97

Isoelectric Point (pI)

29.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66055 AT5G66055
fragaria_vesca	FvH4_1g10990 FvH4_1g10990
malus_domestica	MD15G1236900.v1.1
prunus_persica	Prupe.7G175600_v2.0.a1
pyrus_communis	pycom15g21070
rosa_chinensis	RchiOBHm_Chr1g0316921 RchiOBHm_Chr1g0316981 RchiOBHm_Chr2g0098251 RchiOBHm_Chr2g0145411 RchiOBHm_Chr4g0390291 RchiOBHm_Chr5g0073551
rosa_laevigata	RLG00000001656 RLG00000016779 RLG00000027817 RLG00000030637 RLG00000032089
rosa_multiflora	Rmu_co8173478.1_g000001 Rmu_sc0000104.1_g000031 Rmu_sc0000712.1_g000024 Rmu_sc0001298.1_g000058 Rmu_sc0002048.1_g000015 Rmu_sc0002398.1_g000019 Rmu_sc0004138.1_g000005 Rmu_sc0007472.1_g000006 Rmu_sc0009922.1_g000006
rosa_roxburghii	Rroxscaffold_2G00094620 Rroxscaffold_2G00144120
rosa_rugosa	Rorug02G0071600 Rorug02G0547800 Rorug04G0008500 Rorug04G0008600 Rorug04G0008600 Rorug04G0208000 Rorug05G0455100.1
rosa_samantha	Rh1AG024600 Rh1AG024700 Rh1CG022000 Rh1CG022900 Rh1DG021700 Rh2AG118600 Rh2BG121700 Rh2BG300700 Rh2BG456300 Rh2CG123300 Rh2CG279400 Rh2DG123300 Rh2DG466200 Rh4AG245100 Rh4BG023700 Rh4BG025500 Rh4BG250300 Rh4DG100600 Rh5DG257900 Rh6AG184700
rosa_wichuraiana	Rw1G001670 Rw2G009310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	11
AccBSI	CCGCTC	1 cut(s)	131
AccII	CGCG	1 cut(s)	43
AciI	CCGC	2 cut(s)	8, 129
AclWI	GGATC	4 cut(s)	17, 80, 93, 106
AcsI	RAATTY	4 cut(s)	79, 391, 442, 492
AfaI	GTAC	1 cut(s)	305
AfiI	CCNNNNNNNGG	1 cut(s)	95
AgeI	ACCGGT	1 cut(s)	107
AgsI	TTSAA	1 cut(s)	403
AluBI	AGCT	3 cut(s)	142, 265, 339
AluI	AGCT	3 cut(s)	142, 265, 339
Alw21I	GWGCWC	2 cut(s)	57, 294
Alw26I	GTCTC	1 cut(s)	242
Alw44I	GTGCAC	1 cut(s)	290
AlwI	GGATC	4 cut(s)	17, 80, 93, 106
AlwNI	CAGNNNCTG	1 cut(s)	561
ApaLI	GTGCAC	1 cut(s)	290
ApeKI	GCWGC	2 cut(s)	152, 159
ApoI	RAATTY	4 cut(s)	79, 391, 442, 492
AsiGI	ACCGGT	1 cut(s)	107
AspLEI	GCGC	1 cut(s)	43
AspS9I	GGNCC	2 cut(s)	110, 481
AsuHPI	GGTGA	4 cut(s)	149, 226, 287, 430
AvaII	GGWCC	2 cut(s)	110, 481
AxyI	CCTNAGG	1 cut(s)	27
BaeGI	GKGCMC	1 cut(s)	294
BamHI	GGATCC	1 cut(s)	85
BanI	GGYRCC	1 cut(s)	11
Bbv12I	GWGCWC	2 cut(s)	57, 294
BbvI	GCAGC	2 cut(s)	139, 146
BccI	CCATC	5 cut(s)	23, 249, 341, 374, 435
BceAI	ACGGC	1 cut(s)	543
BclI	TGATCA	1 cut(s)	468
BcoDI	GTCTC	1 cut(s)	242
BisI	GCNGC	2 cut(s)	153, 160
BlsI	GCNGC	2 cut(s)	154, 161
BmcAI	AGTACT	1 cut(s)	305
Bme18I	GGWCC	2 cut(s)	110, 481
BmgT120I	GGNCC	2 cut(s)	110, 481
BmiI	GGNNCC	3 cut(s)	13, 87, 483
BmsI	GCATC	2 cut(s)	171, 548
BoxI	GACNNNNGTC	1 cut(s)	69
BplI	GAGNNNNNCTC	2 cut(s)	170, 202
BpmI	CTGGAG	2 cut(s)	75, 434
BsaBI	GATNNNNATC	1 cut(s)	180
BsaI	GGTCTC	1 cut(s)	242
BsaJI	CCNNGG	1 cut(s)	447
BsaWI	WCCGGW	1 cut(s)	107
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
Bse118I	RCCGGY	1 cut(s)	107
Bse1I	ACTGG	2 cut(s)	92, 417
Bse21I	CCTNAGG	1 cut(s)	27
Bse8I	GATNNNNATC	1 cut(s)	180
BseDI	CCNNGG	1 cut(s)	447
BseGI	GGATG	6 cut(s)	15, 37, 196, 304, 352, 422
BseJI	GATNNNNATC	1 cut(s)	180
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseMII	CTCAG	2 cut(s)	18, 280
BseNI	ACTGG	2 cut(s)	92, 417
BseSI	GKGCMC	1 cut(s)	294
BseXI	GCAGC	2 cut(s)	139, 146
Bsh1236I	CGCG	1 cut(s)	43
BshNI	GGYRCC	1 cut(s)	11
BshTI	ACCGGT	1 cut(s)	107
BsiHKAI	GWGCWC	2 cut(s)	57, 294
BsiSI	CCGG	1 cut(s)	108
BslFI	GGGAC	1 cut(s)	526
BslI	CCNNNNNNNGG	1 cut(s)	95
BsmAI	GTCTC	1 cut(s)	242
BsmFI	GGGAC	1 cut(s)	526
Bso31I	GGTCTC	1 cut(s)	242
Bsp1286I	GDGCHC	2 cut(s)	57, 294
Bsp143I	GATC	5 cut(s)	22, 85, 98, 316, 468
BspACI	CCGC	2 cut(s)	8, 129
BspCNI	CTCAG	2 cut(s)	19, 279
BspFNI	CGCG	1 cut(s)	43
BspHI	TCATGA	1 cut(s)	433
BspLI	GGNNCC	3 cut(s)	13, 87, 483
BspPI	GGATC	4 cut(s)	17, 80, 93, 106
BspT107I	GGYRCC	1 cut(s)	11
BspTNI	GGTCTC	1 cut(s)	242
BsrBI	CCGCTC	1 cut(s)	131
BsrFI	RCCGGY	1 cut(s)	107
BsrI	ACTGG	2 cut(s)	92, 417
BssAI	RCCGGY	1 cut(s)	107
BssECI	CCNNGG	1 cut(s)	447
BssMI	GATC	5 cut(s)	22, 85, 98, 316, 468
BssT1I	CCWWGG	1 cut(s)	447
Bst4CI	ACNGT	1 cut(s)	59
BstAPI	GCANNNNNTGC	1 cut(s)	558
BstC8I	GCNNGC	2 cut(s)	6, 157
BstDEI	CTNAG	2 cut(s)	27, 266
BstF5I	GGATG	6 cut(s)	15, 37, 196, 304, 352, 422
BstFNI	CGCG	1 cut(s)	43
BstHHI	GCGC	1 cut(s)	43
BstKTI	GATC	5 cut(s)	25, 88, 101, 319, 471
BstMAI	GTCTC	1 cut(s)	242
BstMBI	GATC	5 cut(s)	22, 85, 98, 316, 468
BstMWI	GCNNNNNNNGC	1 cut(s)	558
BstPAI	GACNNNNGTC	1 cut(s)	69
BstSLI	GKGCMC	1 cut(s)	294
BstUI	CGCG	1 cut(s)	43
BstV1I	GCAGC	2 cut(s)	139, 146
BstX2I	RGATCY	2 cut(s)	85, 98
BstYI	RGATCY	2 cut(s)	85, 98
Bsu36I	CCTNAGG	1 cut(s)	27
BtsCI	GGATG	6 cut(s)	15, 37, 196, 304, 352, 422
BtsIMutI	CAGTG	2 cut(s)	165, 410
Cac8I	GCNNGC	2 cut(s)	6, 157
CaiI	CAGNNNCTG	1 cut(s)	561
CciI	TCATGA	1 cut(s)	433
CfoI	GCGC	1 cut(s)	43
Cfr10I	RCCGGY	1 cut(s)	107
Cfr13I	GGNCC	2 cut(s)	110, 481
Csp6I	GTAC	1 cut(s)	304
CspAI	ACCGGT	1 cut(s)	107
CviAII	CATG	1 cut(s)	434
CviJI	RGCY	4 cut(s)	142, 159, 265, 339
CviKI_1	RGCY	4 cut(s)	142, 159, 265, 339
CviQI	GTAC	1 cut(s)	304
DdeI	CTNAG	2 cut(s)	27, 266
DpnI	GATC	5 cut(s)	24, 87, 100, 318, 470
DpnII	GATC	5 cut(s)	22, 85, 98, 316, 468
DraI	TTTAAA	1 cut(s)	396
Eco130I	CCWWGG	1 cut(s)	447
Eco31I	GGTCTC	1 cut(s)	242
Eco47I	GGWCC	2 cut(s)	110, 481
Eco81I	CCTNAGG	1 cut(s)	27
EcoO109I	RGGNCCY	1 cut(s)	481
EcoRI	GAATTC	1 cut(s)	79
EcoT14I	CCWWGG	1 cut(s)	447
ErhI	CCWWGG	1 cut(s)	447
FaeI	CATG	1 cut(s)	437
FaiI	YATR	8 cut(s)	225, 237, 342, 360, 371, 435, 499, 524
FaqI	GGGAC	1 cut(s)	526
FatI	CATG	1 cut(s)	433
FbaI	TGATCA	1 cut(s)	468
Fnu4HI	GCNGC	2 cut(s)	153, 160
FokI	GGATG	6 cut(s)	2, 44, 203, 311, 359, 409
Fsp4HI	GCNGC	2 cut(s)	153, 160
GlaI	GCGC	1 cut(s)	42
GluI	GCNGC	2 cut(s)	153, 160
GsuI	CTGGAG	2 cut(s)	75, 434
HapII	CCGG	1 cut(s)	108
HhaI	GCGC	1 cut(s)	43
Hin1II	CATG	1 cut(s)	437
Hin6I	GCGC	1 cut(s)	41
HinP1I	GCGC	1 cut(s)	41
HinfI	GANTC	1 cut(s)	48
HpaII	CCGG	1 cut(s)	108
HphI	GGTGA	4 cut(s)	149, 226, 287, 430
Hpy166II	GTNNAC	2 cut(s)	278, 292
Hpy188I	TCNGA	4 cut(s)	85, 98, 190, 269
Hpy188III	TCNNGA	3 cut(s)	26, 62, 434
Hpy8I	GTNNAC	2 cut(s)	278, 292
Hpy99I	CGWCG	2 cut(s)	48, 152
HpyCH4III	ACNGT	1 cut(s)	59
HpyCH4V	TGCA	5 cut(s)	117, 162, 292, 410, 552
HpyF10VI	GCNNNNNNNGC	1 cut(s)	558
HpyF3I	CTNAG	2 cut(s)	27, 266
Hsp92II	CATG	1 cut(s)	437
HspAI	GCGC	1 cut(s)	41
Ksp22I	TGATCA	1 cut(s)	468
Kzo9I	GATC	5 cut(s)	22, 85, 98, 316, 468
LpnPI	CCDG	7 cut(s)	39, 61, 105, 121, 141, 265, 398
Lsp1109I	GCAGC	2 cut(s)	139, 146
LweI	GCATC	2 cut(s)	171, 548
MaeIII	GTNAC	1 cut(s)	418
MalI	GATC	5 cut(s)	24, 87, 100, 318, 470
MbiI	CCGCTC	1 cut(s)	131
MboI	GATC	5 cut(s)	22, 85, 98, 316, 468
MboII	GAAGA	2 cut(s)	271, 422
MflI	RGATCY	2 cut(s)	85, 98
MhlI	GDGCHC	2 cut(s)	57, 294
MluCI	AATT	6 cut(s)	79, 232, 391, 398, 442, 492
MmeI	TCCRAC	1 cut(s)	76
MnlI	CCTC	8 cut(s)	22, 29, 62, 99, 190, 337, 409, 472
MseI	TTAA	1 cut(s)	395
MslI	CAYNNNNRTG	2 cut(s)	297, 432
MspI	CCGG	1 cut(s)	108
MvnI	CGCG	1 cut(s)	43
MwoI	GCNNNNNNNGC	1 cut(s)	558
NdeII	GATC	5 cut(s)	22, 85, 98, 316, 468
NlaIII	CATG	1 cut(s)	437
NlaIV	GGNNCC	3 cut(s)	13, 87, 483
NmuCI	GTSAC	1 cut(s)	418
PagI	TCATGA	1 cut(s)	433
PfeI	GAWTC	1 cut(s)	48
PflFI	GACNNNGTC	1 cut(s)	517
PinAI	ACCGGT	1 cut(s)	107
PkrI	GCNGC	2 cut(s)	154, 161
PpuMI	RGGWCCY	1 cut(s)	481
PshAI	GACNNNNGTC	1 cut(s)	69
Psp5II	RGGWCCY	1 cut(s)	481
PspN4I	GGNNCC	3 cut(s)	13, 87, 483
PspPI	GGNCC	2 cut(s)	110, 481
PspPPI	RGGWCCY	1 cut(s)	481
PstNI	CAGNNNCTG	1 cut(s)	561
PsuI	RGATCY	2 cut(s)	85, 98
PsyI	GACNNNGTC	1 cut(s)	517
RsaI	GTAC	1 cut(s)	305
RsaNI	GTAC	1 cut(s)	304
RseI	CAYNNNNRTG	2 cut(s)	297, 432
SaqAI	TTAA	1 cut(s)	395
SatI	GCNGC	2 cut(s)	153, 160
Sau3AI	GATC	5 cut(s)	22, 85, 98, 316, 468
Sau96I	GGNCC	2 cut(s)	110, 481
ScaI	AGTACT	1 cut(s)	305
SduI	GDGCHC	2 cut(s)	57, 294
SfaNI	GCATC	2 cut(s)	171, 548
SinI	GGWCC	2 cut(s)	110, 481
SmiMI	CAYNNNNRTG	2 cut(s)	297, 432
Sse9I	AATT	6 cut(s)	79, 232, 391, 398, 442, 492
SsiI	CCGC	2 cut(s)	8, 129
StyI	CCWWGG	1 cut(s)	447
TaaI	ACNGT	1 cut(s)	59
TaqI	TCGA	3 cut(s)	21, 51, 208
TasI	AATT	6 cut(s)	79, 232, 391, 398, 442, 492
TatI	WGTACW	1 cut(s)	303
TfiI	GAWTC	1 cut(s)	48
Tru1I	TTAA	1 cut(s)	395
Tru9I	TTAA	1 cut(s)	395
TscAI	CASTG	2 cut(s)	172, 417
TseFI	GTSAC	1 cut(s)	418
TseI	GCWGC	2 cut(s)	152, 159
Tsp45I	GTSAC	1 cut(s)	418
TspDTI	ATGAA	7 cut(s)	48, 232, 321, 386, 422, 453, 492
TspGWI	ACGGA	1 cut(s)	81
TspRI	CASTG	2 cut(s)	172, 417
Tth111I	GACNNNGTC	1 cut(s)	517
VneI	GTGCAC	1 cut(s)	290
VpaK11BI	GGWCC	2 cut(s)	110, 481
XapI	RAATTY	4 cut(s)	79, 391, 442, 492
ZrmI	AGTACT	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.