Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001128

Physical Location & Seq

Genomic Coordinates Forward (+)

41952915 .. 41953463

Gene Structure 549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG250300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGAAAGAACAACATTACTGGGAAATTCCTTCCAATTGATATTTCGATGTCATTTATTTGTTTGCTCTGTGCGAAAGAGTTGGCTAATATTTGAAATGGTTCAGAATGTGGAGGCAAACAATCGAAAGGTGAAAGTGTATGGTAGGAATTATACATTCATTGAGACCAGATGGAAGAAGCTCAGAGTTGGTGATCTTGTCAAGGTGCACAAGGATGAGTACTTTCTTGCTGATATGCTTTTGCTTTCATCAAGCTATAAGGATGGCATTTGCTATGTGGAAACTATGAACCTTGATGGAGAAACAAATTTAAAATTGAACCATGCACTGGAGGCGACATCCCATCTTCATGATGAAAATTCCTTGGAAAGATTTAGGGCAGTGATCAAGTGTGAGGACCCAAATAAAATTCTATATTCATTTGTTGGGACTTTGTTCTATAACGGCAGAGAACACCCACTTTCCTTGCAACAGATGCTGAAAAATACAGAATATGTCCATGGATTTGTTGTTTTCACTGGGCATGACACAGAAGTGCGGCAAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004012 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006900 GO:0006996 GO:0008150 GO:0009987 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031984 GO:0033036 GO:0034204 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045332 GO:0048193 GO:0048194 GO:0051179 GO:0051234 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0071944 GO:0097035 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase E1-E2_ATPase PhoLip_ATPase_C PhoLip_ATPase_N

Protein Analysis

182

Amino Acids

21.36

Weight (kDa)

7.73

Isoelectric Point (pI)

23.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66055 AT5G66055
fragaria_vesca	FvH4_1g10990 FvH4_1g10990
malus_domestica	MD15G1236900.v1.1
prunus_persica	Prupe.7G175600_v2.0.a1
pyrus_communis	pycom15g21070
rosa_chinensis	RchiOBHm_Chr1g0316921 RchiOBHm_Chr1g0316981 RchiOBHm_Chr2g0098251 RchiOBHm_Chr2g0145411 RchiOBHm_Chr4g0390291 RchiOBHm_Chr5g0073551
rosa_laevigata	RLG00000001656 RLG00000016779 RLG00000027817 RLG00000030637 RLG00000032089
rosa_multiflora	Rmu_co8173478.1_g000001 Rmu_sc0000104.1_g000031 Rmu_sc0000712.1_g000024 Rmu_sc0001298.1_g000058 Rmu_sc0002048.1_g000015 Rmu_sc0002398.1_g000019 Rmu_sc0004138.1_g000005 Rmu_sc0007472.1_g000006 Rmu_sc0009922.1_g000006
rosa_roxburghii	Rroxscaffold_2G00094620 Rroxscaffold_2G00144120
rosa_rugosa	Rorug02G0071600 Rorug02G0547800 Rorug04G0008500 Rorug04G0008600 Rorug04G0008600 Rorug04G0208000 Rorug05G0455100.1
rosa_samantha	Rh1AG024600 Rh1AG024700 Rh1CG022000 Rh1CG022900 Rh1DG021700 Rh2AG118600 Rh2BG121700 Rh2BG300700 Rh2BG456300 Rh2CG123300 Rh2CG279400 Rh2DG123300 Rh2DG466200 Rh4AG245100 Rh4BG023700 Rh4BG025500 Rh4BG250300 Rh4DG100600 Rh5DG257900 Rh6AG184700
rosa_wichuraiana	Rw1G001670 Rw2G009310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	328
AciI	CCGC	1 cut(s)	538
AcsI	RAATTY	4 cut(s)	25, 307, 358, 408
AfaI	GTAC	1 cut(s)	221
AfiI	CCNNNNNNNGG	1 cut(s)	328
AgsI	TTSAA	2 cut(s)	95, 319
AjuI	GAANNNNNNNTTGG	2 cut(s)	27, 59
AleI	CACNNNNGTG	1 cut(s)	533
AluBI	AGCT	2 cut(s)	181, 255
AluI	AGCT	2 cut(s)	181, 255
Alw21I	GWGCWC	1 cut(s)	210
Alw26I	GTCTC	1 cut(s)	158
Alw44I	GTGCAC	1 cut(s)	206
AlwNI	CAGNNNCTG	1 cut(s)	478
ApaLI	GTGCAC	1 cut(s)	206
ApoI	RAATTY	4 cut(s)	25, 307, 358, 408
Asp700I	GAANNNNTTC	1 cut(s)	99
AspS9I	GGNCC	1 cut(s)	397
AsuHPI	GGTGA	2 cut(s)	142, 203
AvaII	GGWCC	1 cut(s)	397
BaeGI	GKGCMC	1 cut(s)	210
Bbv12I	GWGCWC	1 cut(s)	210
BccI	CCATC	4 cut(s)	165, 257, 290, 351
BceAI	ACGGC	1 cut(s)	460
BclI	TGATCA	1 cut(s)	384
BcoDI	GTCTC	1 cut(s)	158
BisI	GCNGC	1 cut(s)	539
BlsI	GCNGC	1 cut(s)	540
BmcAI	AGTACT	1 cut(s)	221
Bme18I	GGWCC	1 cut(s)	397
BmgT120I	GGNCC	1 cut(s)	397
BmiI	GGNNCC	1 cut(s)	399
BmrI	ACTGGG	2 cut(s)	29, 528
BmsI	GCATC	1 cut(s)	465
BmuI	ACTGGG	2 cut(s)	29, 528
BpmI	CTGGAG	1 cut(s)	350
BsaI	GGTCTC	1 cut(s)	158
BsaJI	CCNNGG	2 cut(s)	363, 499
Bsc4I	CCNNNNNNNGG	1 cut(s)	328
Bse1I	ACTGG	3 cut(s)	24, 333, 523
BseDI	CCNNGG	2 cut(s)	363, 499
BseGI	GGATG	3 cut(s)	220, 268, 338
BseLI	CCNNNNNNNGG	1 cut(s)	328
BseMII	CTCAG	1 cut(s)	196
BseNI	ACTGG	3 cut(s)	24, 333, 523
BseSI	GKGCMC	1 cut(s)	210
BsiHKAI	GWGCWC	1 cut(s)	210
BslFI	GGGAC	1 cut(s)	442
BslI	CCNNNNNNNGG	1 cut(s)	328
BsmAI	GTCTC	1 cut(s)	158
BsmFI	GGGAC	1 cut(s)	442
Bso31I	GGTCTC	1 cut(s)	158
Bsp1286I	GDGCHC	1 cut(s)	210
Bsp143I	GATC	2 cut(s)	193, 384
Bsp19I	CCATGG	1 cut(s)	499
BspACI	CCGC	1 cut(s)	538
BspCNI	CTCAG	1 cut(s)	195
BspHI	TCATGA	1 cut(s)	349
BspLI	GGNNCC	1 cut(s)	399
BspTNI	GGTCTC	1 cut(s)	158
BsrI	ACTGG	3 cut(s)	24, 333, 523
BssECI	CCNNGG	2 cut(s)	363, 499
BssMI	GATC	2 cut(s)	193, 384
BssT1I	CCWWGG	2 cut(s)	363, 499
BstAPI	GCANNNNNTGC	1 cut(s)	475
BstDEI	CTNAG	1 cut(s)	182
BstDSI	CCRYGG	1 cut(s)	499
BstF5I	GGATG	3 cut(s)	220, 268, 338
BstKTI	GATC	2 cut(s)	196, 387
BstMAI	GTCTC	1 cut(s)	158
BstMBI	GATC	2 cut(s)	193, 384
BstMWI	GCNNNNNNNGC	2 cut(s)	332, 475
BstSLI	GKGCMC	1 cut(s)	210
BtgI	CCRYGG	1 cut(s)	499
BtsCI	GGATG	3 cut(s)	220, 268, 338
BtsI	GCAGTG	1 cut(s)	387
BtsIMutI	CAGTG	3 cut(s)	326, 387, 516
CaiI	CAGNNNCTG	1 cut(s)	478
CciI	TCATGA	1 cut(s)	349
Cfr13I	GGNCC	1 cut(s)	397
Csp6I	GTAC	1 cut(s)	220
CspCI	CAANNNNNGTGG	2 cut(s)	447, 482
CviAII	CATG	4 cut(s)	323, 350, 500, 524
CviJI	RGCY	3 cut(s)	85, 181, 255
CviKI_1	RGCY	3 cut(s)	85, 181, 255
CviQI	GTAC	1 cut(s)	220
DdeI	CTNAG	1 cut(s)	182
DpnI	GATC	2 cut(s)	195, 386
DpnII	GATC	2 cut(s)	193, 384
DraI	TTTAAA	1 cut(s)	312
Eco130I	CCWWGG	2 cut(s)	363, 499
Eco31I	GGTCTC	1 cut(s)	158
Eco47I	GGWCC	1 cut(s)	397
EcoO109I	RGGNCCY	1 cut(s)	397
EcoT14I	CCWWGG	2 cut(s)	363, 499
ErhI	CCWWGG	2 cut(s)	363, 499
FaeI	CATG	4 cut(s)	326, 353, 503, 527
FaqI	GGGAC	1 cut(s)	442
FatI	CATG	4 cut(s)	322, 349, 499, 523
FbaI	TGATCA	1 cut(s)	384
Fnu4HI	GCNGC	1 cut(s)	539
FokI	GGATG	3 cut(s)	227, 275, 325
Fsp4HI	GCNGC	1 cut(s)	539
GluI	GCNGC	1 cut(s)	539
GsuI	CTGGAG	1 cut(s)	350
Hin1II	CATG	4 cut(s)	326, 353, 503, 527
HphI	GGTGA	2 cut(s)	142, 203
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	2 cut(s)	105, 185
Hpy188III	TCNNGA	1 cut(s)	350
Hpy8I	GTNNAC	1 cut(s)	208
HpyAV	CCTTC	1 cut(s)	40
HpyCH4V	TGCA	3 cut(s)	208, 326, 469
HpyF10VI	GCNNNNNNNGC	2 cut(s)	332, 475
HpyF3I	CTNAG	1 cut(s)	182
Hsp92II	CATG	4 cut(s)	326, 353, 503, 527
Ksp22I	TGATCA	1 cut(s)	384
Kzo9I	GATC	2 cut(s)	193, 384
LpnPI	CCDG	4 cut(s)	5, 181, 314, 504
LweI	GCATC	1 cut(s)	465
MalI	GATC	2 cut(s)	195, 386
MboI	GATC	2 cut(s)	193, 384
MboII	GAAGA	2 cut(s)	187, 338
MfeI	CAATTG	1 cut(s)	35
MhlI	GDGCHC	1 cut(s)	210
MluCI	AATT	7 cut(s)	25, 35, 148, 307, 314, 358, 408
MnlI	CCTC	3 cut(s)	106, 325, 388
MroXI	GAANNNNTTC	1 cut(s)	99
MseI	TTAA	1 cut(s)	311
MslI	CAYNNNNRTG	3 cut(s)	213, 348, 533
MunI	CAATTG	1 cut(s)	35
MwoI	GCNNNNNNNGC	2 cut(s)	332, 475
NcoI	CCATGG	1 cut(s)	499
NdeII	GATC	2 cut(s)	193, 384
NlaIII	CATG	4 cut(s)	326, 353, 503, 527
NlaIV	GGNNCC	1 cut(s)	399
OliI	CACNNNNGTG	1 cut(s)	533
PagI	TCATGA	1 cut(s)	349
PdmI	GAANNNNTTC	1 cut(s)	99
PflMI	CCANNNNNTGG	1 cut(s)	328
PkrI	GCNGC	1 cut(s)	540
PpuMI	RGGWCCY	1 cut(s)	397
Psp5II	RGGWCCY	1 cut(s)	397
PspN4I	GGNNCC	1 cut(s)	399
PspPI	GGNCC	1 cut(s)	397
PspPPI	RGGWCCY	1 cut(s)	397
PstNI	CAGNNNCTG	1 cut(s)	478
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
RseI	CAYNNNNRTG	3 cut(s)	213, 348, 533
SaqAI	TTAA	1 cut(s)	311
SatI	GCNGC	1 cut(s)	539
Sau3AI	GATC	2 cut(s)	193, 384
Sau96I	GGNCC	1 cut(s)	397
ScaI	AGTACT	1 cut(s)	221
SduI	GDGCHC	1 cut(s)	210
SetI	ASST	5 cut(s)	132, 183, 207, 257, 294
SfaNI	GCATC	1 cut(s)	465
SinI	GGWCC	1 cut(s)	397
SmiMI	CAYNNNNRTG	3 cut(s)	213, 348, 533
Sse9I	AATT	7 cut(s)	25, 35, 148, 307, 314, 358, 408
SsiI	CCGC	1 cut(s)	538
SspI	AATATT	1 cut(s)	90
StyI	CCWWGG	2 cut(s)	363, 499
TaqI	TCGA	2 cut(s)	46, 124
TasI	AATT	7 cut(s)	25, 35, 148, 307, 314, 358, 408
TatI	WGTACW	1 cut(s)	219
TauI	GCSGC	1 cut(s)	541
Tru1I	TTAA	1 cut(s)	311
Tru9I	TTAA	1 cut(s)	311
TscAI	CASTG	3 cut(s)	333, 387, 523
TspDTI	ATGAA	6 cut(s)	148, 237, 302, 338, 369, 408
TspRI	CASTG	3 cut(s)	333, 387, 523
Van91I	CCANNNNNTGG	1 cut(s)	328
VneI	GTGCAC	1 cut(s)	206
VpaK11BI	GGWCC	1 cut(s)	397
XapI	RAATTY	4 cut(s)	25, 307, 358, 408
XmnI	GAANNNNTTC	1 cut(s)	99
ZrmI	AGTACT	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.