Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001128

Physical Location & Seq

Genomic Coordinates Reverse (-)

30983162 .. 30990705

Gene Structure 7544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG279400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGCGTTTGCTTTCATCAAGCTATGATGATGGCATTTGCTATGTGGAAACTATGAACCTTGATGGAGAAACAAATTTAAAATTGAACCATGCACTGGAGGTGACATCCCATCTTCATGATGAAAATTCCTTGGAAAGATTTAGGGCAGTGATCAAGTGTGAGGACCCAAATAAAATTCTATATTCATTTGTTGGGACTTTGTTCTATAATGGCAGAGAACACCCACTTTCCTTGCAACAGATGCTGAAAAATACAGAATATGTCCATGGATTTGTTGTTTTCACTGGGCATGACATAGAAGTGTGGCAAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004012 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006900 GO:0006996 GO:0008150 GO:0009987 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031984 GO:0033036 GO:0034204 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045332 GO:0048193 GO:0048194 GO:0051179 GO:0051234 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0071944 GO:0097035 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase E1-E2_ATPase PhoLip_ATPase_C PhoLip_ATPase_N

Protein Analysis

104

Amino Acids

12.05

Weight (kDa)

5.18

Isoelectric Point (pI)

24.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66055 AT5G66055
fragaria_vesca	FvH4_1g10990 FvH4_1g10990
malus_domestica	MD15G1236900.v1.1
prunus_persica	Prupe.7G175600_v2.0.a1
pyrus_communis	pycom15g21070
rosa_chinensis	RchiOBHm_Chr1g0316921 RchiOBHm_Chr1g0316981 RchiOBHm_Chr2g0098251 RchiOBHm_Chr2g0145411 RchiOBHm_Chr4g0390291 RchiOBHm_Chr5g0073551
rosa_laevigata	RLG00000001656 RLG00000016779 RLG00000027817 RLG00000030637 RLG00000032089
rosa_multiflora	Rmu_co8173478.1_g000001 Rmu_sc0000104.1_g000031 Rmu_sc0000712.1_g000024 Rmu_sc0001298.1_g000058 Rmu_sc0002048.1_g000015 Rmu_sc0002398.1_g000019 Rmu_sc0004138.1_g000005 Rmu_sc0007472.1_g000006 Rmu_sc0009922.1_g000006
rosa_roxburghii	Rroxscaffold_2G00094620 Rroxscaffold_2G00144120
rosa_rugosa	Rorug02G0071600 Rorug02G0547800 Rorug04G0008500 Rorug04G0008600 Rorug04G0008600 Rorug04G0208000 Rorug05G0455100.1
rosa_samantha	Rh1AG024600 Rh1AG024700 Rh1CG022000 Rh1CG022900 Rh1DG021700 Rh2AG118600 Rh2BG121700 Rh2BG300700 Rh2BG456300 Rh2CG123300 Rh2CG279400 Rh2DG123300 Rh2DG466200 Rh4AG245100 Rh4BG023700 Rh4BG025500 Rh4BG250300 Rh4DG100600 Rh5DG257900 Rh6AG184700
rosa_wichuraiana	Rw1G001670 Rw2G009310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	94
AcsI	RAATTY	3 cut(s)	73, 124, 174
AfiI	CCNNNNNNNGG	1 cut(s)	94
AgsI	TTSAA	1 cut(s)	85
AluBI	AGCT	1 cut(s)	21
AluI	AGCT	1 cut(s)	21
AlwNI	CAGNNNCTG	1 cut(s)	244
ApoI	RAATTY	3 cut(s)	73, 124, 174
AspS9I	GGNCC	1 cut(s)	163
AsuHPI	GGTGA	1 cut(s)	112
AvaII	GGWCC	1 cut(s)	163
BccI	CCATC	3 cut(s)	23, 56, 117
BclI	TGATCA	1 cut(s)	150
Bme18I	GGWCC	1 cut(s)	163
BmgT120I	GGNCC	1 cut(s)	163
BmiI	GGNNCC	1 cut(s)	165
BmrI	ACTGGG	1 cut(s)	294
BmsI	GCATC	1 cut(s)	231
BmuI	ACTGGG	1 cut(s)	294
BpmI	CTGGAG	1 cut(s)	116
BsaJI	CCNNGG	2 cut(s)	129, 265
Bsc4I	CCNNNNNNNGG	1 cut(s)	94
Bse1I	ACTGG	2 cut(s)	99, 289
BseDI	CCNNGG	2 cut(s)	129, 265
BseGI	GGATG	1 cut(s)	104
BseLI	CCNNNNNNNGG	1 cut(s)	94
BseNI	ACTGG	2 cut(s)	99, 289
BslFI	GGGAC	1 cut(s)	208
BslI	CCNNNNNNNGG	1 cut(s)	94
BsmFI	GGGAC	1 cut(s)	208
Bsp143I	GATC	1 cut(s)	150
Bsp19I	CCATGG	1 cut(s)	265
BspHI	TCATGA	1 cut(s)	115
BspLI	GGNNCC	1 cut(s)	165
BsrI	ACTGG	2 cut(s)	99, 289
BssECI	CCNNGG	2 cut(s)	129, 265
BssMI	GATC	1 cut(s)	150
BssT1I	CCWWGG	2 cut(s)	129, 265
BstAPI	GCANNNNNTGC	1 cut(s)	241
BstDSI	CCRYGG	1 cut(s)	265
BstF5I	GGATG	1 cut(s)	104
BstKTI	GATC	1 cut(s)	153
BstMBI	GATC	1 cut(s)	150
BstMWI	GCNNNNNNNGC	1 cut(s)	241
BtgI	CCRYGG	1 cut(s)	265
BtsCI	GGATG	1 cut(s)	104
BtsI	GCAGTG	1 cut(s)	153
BtsIMutI	CAGTG	3 cut(s)	92, 153, 282
CaiI	CAGNNNCTG	1 cut(s)	244
CciI	TCATGA	1 cut(s)	115
Cfr13I	GGNCC	1 cut(s)	163
CspCI	CAANNNNNGTGG	2 cut(s)	213, 248
CviAII	CATG	4 cut(s)	89, 116, 266, 290
CviJI	RGCY	1 cut(s)	21
CviKI_1	RGCY	1 cut(s)	21
DpnI	GATC	1 cut(s)	152
DpnII	GATC	1 cut(s)	150
DraI	TTTAAA	1 cut(s)	78
Eco130I	CCWWGG	2 cut(s)	129, 265
Eco47I	GGWCC	1 cut(s)	163
EcoO109I	RGGNCCY	1 cut(s)	163
EcoT14I	CCWWGG	2 cut(s)	129, 265
ErhI	CCWWGG	2 cut(s)	129, 265
FaeI	CATG	4 cut(s)	92, 119, 269, 293
FaqI	GGGAC	1 cut(s)	208
FatI	CATG	4 cut(s)	88, 115, 265, 289
FbaI	TGATCA	1 cut(s)	150
FokI	GGATG	1 cut(s)	91
GsuI	CTGGAG	1 cut(s)	116
Hin1II	CATG	4 cut(s)	92, 119, 269, 293
HphI	GGTGA	1 cut(s)	112
Hpy188III	TCNNGA	1 cut(s)	116
HpyCH4V	TGCA	2 cut(s)	92, 235
HpyF10VI	GCNNNNNNNGC	1 cut(s)	241
Hsp92II	CATG	4 cut(s)	92, 119, 269, 293
Ksp22I	TGATCA	1 cut(s)	150
Kzo9I	GATC	1 cut(s)	150
LpnPI	CCDG	2 cut(s)	80, 270
LweI	GCATC	1 cut(s)	231
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	1 cut(s)	152
MboI	GATC	1 cut(s)	150
MboII	GAAGA	1 cut(s)	104
MluCI	AATT	4 cut(s)	73, 80, 124, 174
MnlI	CCTC	2 cut(s)	91, 154
MseI	TTAA	1 cut(s)	77
MslI	CAYNNNNRTG	2 cut(s)	114, 299
MwoI	GCNNNNNNNGC	1 cut(s)	241
NcoI	CCATGG	1 cut(s)	265
NdeII	GATC	1 cut(s)	150
NlaIII	CATG	4 cut(s)	92, 119, 269, 293
NlaIV	GGNNCC	1 cut(s)	165
NmuCI	GTSAC	1 cut(s)	100
PagI	TCATGA	1 cut(s)	115
PflMI	CCANNNNNTGG	1 cut(s)	94
PpuMI	RGGWCCY	1 cut(s)	163
Psp5II	RGGWCCY	1 cut(s)	163
PspN4I	GGNNCC	1 cut(s)	165
PspPI	GGNCC	1 cut(s)	163
PspPPI	RGGWCCY	1 cut(s)	163
PstNI	CAGNNNCTG	1 cut(s)	244
RseI	CAYNNNNRTG	2 cut(s)	114, 299
SaqAI	TTAA	1 cut(s)	77
Sau3AI	GATC	1 cut(s)	150
Sau96I	GGNCC	1 cut(s)	163
SetI	ASST	3 cut(s)	23, 60, 102
SfaNI	GCATC	1 cut(s)	231
SinI	GGWCC	1 cut(s)	163
SmiMI	CAYNNNNRTG	2 cut(s)	114, 299
Sse9I	AATT	4 cut(s)	73, 80, 124, 174
StyI	CCWWGG	2 cut(s)	129, 265
TasI	AATT	4 cut(s)	73, 80, 124, 174
Tru1I	TTAA	1 cut(s)	77
Tru9I	TTAA	1 cut(s)	77
TscAI	CASTG	3 cut(s)	99, 153, 289
TseFI	GTSAC	1 cut(s)	100
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	4 cut(s)	68, 104, 135, 174
TspRI	CASTG	3 cut(s)	99, 153, 289
Van91I	CCANNNNNTGG	1 cut(s)	94
VpaK11BI	GGWCC	1 cut(s)	163
XapI	RAATTY	3 cut(s)	73, 124, 174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.