Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001298.1

Orthogroup ID

OG0001128

Physical Location & Seq

Genomic Coordinates Forward (+)

196979 .. 200229

Gene Structure 3251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001298.1_g000058.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

atggcgaagaacgaagcgtctttgggatcgcggtacgagttcttgaagaggtgccgactcgctgagcgcgatggtaaaatcgaacgccactttgcgctcggcgaacccgaggcagatgaaggcatgcttgccggtgccatcctcgatcctgaggatgaagtagcgcgacgattcgagcacggtcttgacggaggtcgctggaattcggatcctccagtcggatctcgcaccggtccttgcacgaccttttccgctctcggcgagcttctcgtcgctgctggctgcatcactgactttgatgagtatcgctcggatgtggaggcaaataatcgaaaggtgaaagtgtatggtaggaattatacattcattgagaccagatggaagaagctcagagttggtgaacttgtcaaggtgcacaaggatgagtactttcttgttgatctgcttttgctttcatcaagctatgaggatggcatttgctatgtggaaactatgaaccttgatggagaaacaaatttaaaattgaacaatgcactggaggtgacatcccatcttcatgatgaaaattccttggaaagatttagggcagtgatcaagtgtgaggacccaaataaaattctatattcatttgttgggactttgttctataacggcagagaacacccactttccttgcaacagatgctgaaaaatacagaatatgtccatggatttgttgttttcactgggcatgatacagaattgcggcaaagttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004012 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006900 GO:0006996 GO:0008150 GO:0009987 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031984 GO:0033036 GO:0034204 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045332 GO:0048193 GO:0048194 GO:0051179 GO:0051234 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0071944 GO:0097035 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase E1-E2_ATPase PhoLip_ATPase_C PhoLip_ATPase_N

Protein Analysis

251

Amino Acids

28.58

Weight (kDa)

5.27

Isoelectric Point (pI)

33.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66055 AT5G66055
fragaria_vesca	FvH4_1g10990 FvH4_1g10990
malus_domestica	MD15G1236900.v1.1
prunus_persica	Prupe.7G175600_v2.0.a1
pyrus_communis	pycom15g21070
rosa_chinensis	RchiOBHm_Chr1g0316921 RchiOBHm_Chr1g0316981 RchiOBHm_Chr2g0098251 RchiOBHm_Chr2g0145411 RchiOBHm_Chr4g0390291 RchiOBHm_Chr5g0073551
rosa_laevigata	RLG00000001656 RLG00000016779 RLG00000027817 RLG00000030637 RLG00000032089
rosa_multiflora	Rmu_co8173478.1_g000001 Rmu_sc0000104.1_g000031 Rmu_sc0000712.1_g000024 Rmu_sc0001298.1_g000058 Rmu_sc0002048.1_g000015 Rmu_sc0002398.1_g000019 Rmu_sc0004138.1_g000005 Rmu_sc0007472.1_g000006 Rmu_sc0009922.1_g000006
rosa_roxburghii	Rroxscaffold_2G00094620 Rroxscaffold_2G00144120
rosa_rugosa	Rorug02G0071600 Rorug02G0547800 Rorug04G0008500 Rorug04G0008600 Rorug04G0008600 Rorug04G0208000 Rorug05G0455100.1
rosa_samantha	Rh1AG024600 Rh1AG024700 Rh1CG022000 Rh1CG022900 Rh1DG021700 Rh2AG118600 Rh2BG121700 Rh2BG300700 Rh2BG456300 Rh2CG123300 Rh2CG279400 Rh2DG123300 Rh2DG466200 Rh4AG245100 Rh4BG023700 Rh4BG025500 Rh4BG250300 Rh4DG100600 Rh5DG257900 Rh6AG184700
rosa_wichuraiana	Rw1G001670 Rw2G009310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	51, 134
AccBSI	CCGCTC	1 cut(s)	254
AccII	CGCG	3 cut(s)	31, 69, 166
AciI	CCGC	3 cut(s)	31, 252, 745
AclWI	GGATC	5 cut(s)	34, 140, 203, 216, 229
AcsI	RAATTY	4 cut(s)	202, 514, 565, 615
AfaI	GTAC	2 cut(s)	35, 428
AfiI	CCNNNNNNNGG	1 cut(s)	218
AgeI	ACCGGT	1 cut(s)	230
AgsI	TTSAA	2 cut(s)	46, 526
AluBI	AGCT	3 cut(s)	265, 388, 462
AluI	AGCT	3 cut(s)	265, 388, 462
Alw21I	GWGCWC	2 cut(s)	180, 417
Alw26I	GTCTC	1 cut(s)	365
Alw44I	GTGCAC	1 cut(s)	413
AlwI	GGATC	5 cut(s)	34, 140, 203, 216, 229
AlwNI	CAGNNNCTG	1 cut(s)	685
Ama87I	CYCGRG	1 cut(s)	107
ApaLI	GTGCAC	1 cut(s)	413
ApeKI	GCWGC	2 cut(s)	275, 282
ApoI	RAATTY	4 cut(s)	202, 514, 565, 615
AsiGI	ACCGGT	1 cut(s)	230
AspLEI	GCGC	3 cut(s)	69, 97, 166
AspS9I	GGNCC	2 cut(s)	233, 604
AsuHPI	GGTGA	3 cut(s)	349, 410, 553
AvaI	CYCGRG	1 cut(s)	107
AvaII	GGWCC	2 cut(s)	233, 604
AxyI	CCTNAGG	1 cut(s)	150
BaeGI	GKGCMC	1 cut(s)	417
BamHI	GGATCC	1 cut(s)	208
BanI	GGYRCC	2 cut(s)	51, 134
Bbv12I	GWGCWC	2 cut(s)	180, 417
BbvI	GCAGC	2 cut(s)	262, 269
BccI	CCATC	6 cut(s)	65, 146, 372, 464, 497, 558
BceAI	ACGGC	1 cut(s)	667
BclI	TGATCA	1 cut(s)	591
BcoDI	GTCTC	1 cut(s)	365
BisI	GCNGC	3 cut(s)	276, 283, 746
BlpI	GCTNAGC	1 cut(s)	63
BlsI	GCNGC	3 cut(s)	277, 284, 747
BmcAI	AGTACT	1 cut(s)	428
Bme18I	GGWCC	2 cut(s)	233, 604
BmeT110I	CYCGRG	1 cut(s)	107
BmgT120I	GGNCC	2 cut(s)	233, 604
BmiI	GGNNCC	4 cut(s)	53, 136, 210, 606
BmrI	ACTGGG	1 cut(s)	735
BmsI	GCATC	2 cut(s)	294, 672
BmuI	ACTGGG	1 cut(s)	735
BoxI	GACNNNNGTC	1 cut(s)	192
BplI	GAGNNNNNCTC	2 cut(s)	293, 325
BpmI	CTGGAG	2 cut(s)	198, 557
Bpu1102I	GCTNAGC	1 cut(s)	63
BsaBI	GATNNNNATC	1 cut(s)	303
BsaI	GGTCTC	1 cut(s)	365
BsaJI	CCNNGG	3 cut(s)	108, 570, 706
BsaWI	WCCGGW	1 cut(s)	230
Bsc4I	CCNNNNNNNGG	1 cut(s)	218
Bse118I	RCCGGY	2 cut(s)	131, 230
Bse1I	ACTGG	3 cut(s)	215, 540, 730
Bse21I	CCTNAGG	1 cut(s)	150
Bse8I	GATNNNNATC	1 cut(s)	303
BseDI	CCNNGG	3 cut(s)	108, 570, 706
BseGI	GGATG	6 cut(s)	138, 160, 319, 427, 475, 545
BseJI	GATNNNNATC	1 cut(s)	303
BseLI	CCNNNNNNNGG	1 cut(s)	218
BseMII	CTCAG	3 cut(s)	54, 141, 403
BseNI	ACTGG	3 cut(s)	215, 540, 730
BseSI	GKGCMC	1 cut(s)	417
BseXI	GCAGC	2 cut(s)	262, 269
Bsh1236I	CGCG	3 cut(s)	31, 69, 166
BshNI	GGYRCC	2 cut(s)	51, 134
BshTI	ACCGGT	1 cut(s)	230
BsiHKAI	GWGCWC	2 cut(s)	180, 417
BsiHKCI	CYCGRG	1 cut(s)	107
BsiSI	CCGG	2 cut(s)	132, 231
BslFI	GGGAC	1 cut(s)	649
BslI	CCNNNNNNNGG	1 cut(s)	218
BsmAI	GTCTC	1 cut(s)	365
BsmFI	GGGAC	1 cut(s)	649
Bso31I	GGTCTC	1 cut(s)	365
BsoBI	CYCGRG	1 cut(s)	107
Bsp1286I	GDGCHC	2 cut(s)	180, 417
Bsp143I	GATC	6 cut(s)	26, 145, 208, 221, 439, 591
Bsp1720I	GCTNAGC	1 cut(s)	63
Bsp19I	CCATGG	1 cut(s)	706
BspACI	CCGC	3 cut(s)	31, 252, 745
BspCNI	CTCAG	3 cut(s)	55, 142, 402
BspFNI	CGCG	3 cut(s)	31, 69, 166
BspHI	TCATGA	1 cut(s)	556
BspLI	GGNNCC	4 cut(s)	53, 136, 210, 606
BspPI	GGATC	5 cut(s)	34, 140, 203, 216, 229
BspT107I	GGYRCC	2 cut(s)	51, 134
BspTNI	GGTCTC	1 cut(s)	365
BsrBI	CCGCTC	1 cut(s)	254
BsrFI	RCCGGY	2 cut(s)	131, 230
BsrI	ACTGG	3 cut(s)	215, 540, 730
BssAI	RCCGGY	2 cut(s)	131, 230
BssECI	CCNNGG	3 cut(s)	108, 570, 706
BssMI	GATC	6 cut(s)	26, 145, 208, 221, 439, 591
BssT1I	CCWWGG	2 cut(s)	570, 706
Bst4CI	ACNGT	1 cut(s)	182
Bst6I	CTCTTC	1 cut(s)	41
BstAPI	GCANNNNNTGC	1 cut(s)	682
BstC8I	GCNNGC	4 cut(s)	125, 129, 263, 280
BstDEI	CTNAG	3 cut(s)	63, 150, 389
BstDSI	CCRYGG	1 cut(s)	706
BstF5I	GGATG	6 cut(s)	138, 160, 319, 427, 475, 545
BstFNI	CGCG	3 cut(s)	31, 69, 166
BstHHI	GCGC	3 cut(s)	69, 97, 166
BstKTI	GATC	6 cut(s)	29, 148, 211, 224, 442, 594
BstMAI	GTCTC	1 cut(s)	365
BstMBI	GATC	6 cut(s)	26, 145, 208, 221, 439, 591
BstMWI	GCNNNNNNNGC	1 cut(s)	682
BstNSI	RCATGY	1 cut(s)	127
BstPAI	GACNNNNGTC	1 cut(s)	192
BstSLI	GKGCMC	1 cut(s)	417
BstUI	CGCG	3 cut(s)	31, 69, 166
BstV1I	GCAGC	2 cut(s)	262, 269
BstX2I	RGATCY	2 cut(s)	208, 221
BstYI	RGATCY	2 cut(s)	208, 221
Bsu36I	CCTNAGG	1 cut(s)	150
BtgI	CCRYGG	1 cut(s)	706
BtgZI	GCGATG	1 cut(s)	84
BtsCI	GGATG	6 cut(s)	138, 160, 319, 427, 475, 545
BtsI	GCAGTG	1 cut(s)	594
BtsIMutI	CAGTG	4 cut(s)	288, 533, 594, 723
Cac8I	GCNNGC	4 cut(s)	125, 129, 263, 280
CaiI	CAGNNNCTG	1 cut(s)	685
CciI	TCATGA	1 cut(s)	556
CfoI	GCGC	3 cut(s)	69, 97, 166
Cfr10I	RCCGGY	2 cut(s)	131, 230
Cfr13I	GGNCC	2 cut(s)	233, 604
CseI	GACGC	1 cut(s)	6
Csp6I	GTAC	2 cut(s)	34, 427
CspAI	ACCGGT	1 cut(s)	230
CspCI	CAANNNNNGTGG	2 cut(s)	654, 689
CviAII	CATG	4 cut(s)	124, 557, 707, 731
CviJI	RGCY	4 cut(s)	265, 282, 388, 462
CviKI_1	RGCY	4 cut(s)	265, 282, 388, 462
CviQI	GTAC	2 cut(s)	34, 427
DdeI	CTNAG	3 cut(s)	63, 150, 389
DpnI	GATC	6 cut(s)	28, 147, 210, 223, 441, 593
DpnII	GATC	6 cut(s)	26, 145, 208, 221, 439, 591
DraI	TTTAAA	1 cut(s)	519
Eam1104I	CTCTTC	1 cut(s)	41
EarI	CTCTTC	1 cut(s)	41
Eco130I	CCWWGG	2 cut(s)	570, 706
Eco31I	GGTCTC	1 cut(s)	365
Eco47I	GGWCC	2 cut(s)	233, 604
Eco81I	CCTNAGG	1 cut(s)	150
Eco88I	CYCGRG	1 cut(s)	107
EcoO109I	RGGNCCY	1 cut(s)	604
EcoRI	GAATTC	1 cut(s)	202
EcoT14I	CCWWGG	2 cut(s)	570, 706
ErhI	CCWWGG	2 cut(s)	570, 706
FaeI	CATG	4 cut(s)	127, 560, 710, 734
FalI	AAGNNNNNCTT	2 cut(s)	111, 143
FaqI	GGGAC	1 cut(s)	649
FatI	CATG	4 cut(s)	123, 556, 706, 730
FbaI	TGATCA	1 cut(s)	591
Fnu4HI	GCNGC	3 cut(s)	276, 283, 746
FokI	GGATG	6 cut(s)	125, 167, 326, 434, 482, 532
Fsp4HI	GCNGC	3 cut(s)	276, 283, 746
GlaI	GCGC	3 cut(s)	68, 96, 165
GluI	GCNGC	3 cut(s)	276, 283, 746
GsuI	CTGGAG	2 cut(s)	198, 557
HapII	CCGG	2 cut(s)	132, 231
HgaI	GACGC	1 cut(s)	6
HhaI	GCGC	3 cut(s)	69, 97, 166
Hin1II	CATG	4 cut(s)	127, 560, 710, 734
Hin6I	GCGC	3 cut(s)	67, 95, 164
HinP1I	GCGC	3 cut(s)	67, 95, 164
HinfI	GANTC	2 cut(s)	57, 171
HpaII	CCGG	2 cut(s)	132, 231
HphI	GGTGA	3 cut(s)	349, 410, 553
Hpy166II	GTNNAC	2 cut(s)	401, 415
Hpy188I	TCNGA	4 cut(s)	208, 221, 313, 392
Hpy188III	TCNNGA	4 cut(s)	43, 149, 185, 557
Hpy8I	GTNNAC	2 cut(s)	401, 415
Hpy99I	CGWCG	2 cut(s)	171, 275
HpyAV	CCTTC	1 cut(s)	113
HpyCH4III	ACNGT	1 cut(s)	182
HpyCH4V	TGCA	5 cut(s)	240, 285, 415, 533, 676
HpyF10VI	GCNNNNNNNGC	1 cut(s)	682
HpyF3I	CTNAG	3 cut(s)	63, 150, 389
Hsp92II	CATG	4 cut(s)	127, 560, 710, 734
HspAI	GCGC	3 cut(s)	67, 95, 164
Ksp22I	TGATCA	1 cut(s)	591
Kzo9I	GATC	6 cut(s)	26, 145, 208, 221, 439, 591
LpnPI	CCDG	9 cut(s)	145, 162, 184, 228, 244, 264, 388, 521, 711
Lsp1109I	GCAGC	2 cut(s)	262, 269
LweI	GCATC	2 cut(s)	294, 672
MaeIII	GTNAC	1 cut(s)	541
MalI	GATC	6 cut(s)	28, 147, 210, 223, 441, 593
MbiI	CCGCTC	1 cut(s)	254
MboI	GATC	6 cut(s)	26, 145, 208, 221, 439, 591
MboII	GAAGA	4 cut(s)	19, 58, 394, 545
MflI	RGATCY	2 cut(s)	208, 221
MhlI	GDGCHC	2 cut(s)	180, 417
MluCI	AATT	7 cut(s)	202, 355, 514, 521, 565, 615, 740
MlyI	GAGTC	1 cut(s)	51
MmeI	TCCRAC	1 cut(s)	199
MseI	TTAA	1 cut(s)	518
MslI	CAYNNNNRTG	2 cut(s)	420, 555
MspI	CCGG	2 cut(s)	132, 231
MvnI	CGCG	3 cut(s)	31, 69, 166
MwoI	GCNNNNNNNGC	1 cut(s)	682
NcoI	CCATGG	1 cut(s)	706
NdeII	GATC	6 cut(s)	26, 145, 208, 221, 439, 591
NlaIII	CATG	4 cut(s)	127, 560, 710, 734
NlaIV	GGNNCC	4 cut(s)	53, 136, 210, 606
NmeAIII	GCCGAG	2 cut(s)	78, 237
NmuCI	GTSAC	1 cut(s)	541
NspI	RCATGY	1 cut(s)	127
PaeI	GCATGC	1 cut(s)	127
PagI	TCATGA	1 cut(s)	556
PcsI	WCGNNNNNNNCGW	2 cut(s)	66, 105
PfeI	GAWTC	1 cut(s)	171
PinAI	ACCGGT	1 cut(s)	230
PkrI	GCNGC	3 cut(s)	277, 284, 747
PleI	GAGTC	1 cut(s)	51
PpsI	GAGTC	1 cut(s)	51
PpuMI	RGGWCCY	1 cut(s)	604
PshAI	GACNNNNGTC	1 cut(s)	192
Psp5II	RGGWCCY	1 cut(s)	604
PspN4I	GGNNCC	4 cut(s)	53, 136, 210, 606
PspPI	GGNCC	2 cut(s)	233, 604
PspPPI	RGGWCCY	1 cut(s)	604
PstNI	CAGNNNCTG	1 cut(s)	685
PsuI	RGATCY	2 cut(s)	208, 221
RsaI	GTAC	2 cut(s)	35, 428
RsaNI	GTAC	2 cut(s)	34, 427
RseI	CAYNNNNRTG	2 cut(s)	420, 555
SaqAI	TTAA	1 cut(s)	518
SatI	GCNGC	3 cut(s)	276, 283, 746
Sau3AI	GATC	6 cut(s)	26, 145, 208, 221, 439, 591
Sau96I	GGNCC	2 cut(s)	233, 604
ScaI	AGTACT	1 cut(s)	428
SchI	GAGTC	1 cut(s)	51
SduI	GDGCHC	2 cut(s)	180, 417
SfaNI	GCATC	2 cut(s)	294, 672
SinI	GGWCC	2 cut(s)	233, 604
SmiMI	CAYNNNNRTG	2 cut(s)	420, 555
SphI	GCATGC	1 cut(s)	127
Sse9I	AATT	7 cut(s)	202, 355, 514, 521, 565, 615, 740
SsiI	CCGC	3 cut(s)	31, 252, 745
StyI	CCWWGG	2 cut(s)	570, 706
TaaI	ACNGT	1 cut(s)	182
TaqI	TCGA	4 cut(s)	81, 144, 174, 331
TasI	AATT	7 cut(s)	202, 355, 514, 521, 565, 615, 740
TatI	WGTACW	1 cut(s)	426
TauI	GCSGC	1 cut(s)	748
TfiI	GAWTC	1 cut(s)	171
Tru1I	TTAA	1 cut(s)	518
Tru9I	TTAA	1 cut(s)	518
TscAI	CASTG	4 cut(s)	295, 540, 594, 730
TseFI	GTSAC	1 cut(s)	541
TseI	GCWGC	2 cut(s)	275, 282
Tsp45I	GTSAC	1 cut(s)	541
TspDTI	ATGAA	8 cut(s)	132, 171, 355, 444, 509, 545, 576, 615
TspGWI	ACGGA	1 cut(s)	204
TspRI	CASTG	4 cut(s)	295, 540, 594, 730
VneI	GTGCAC	1 cut(s)	413
VpaK11BI	GGWCC	2 cut(s)	233, 604
XapI	RAATTY	4 cut(s)	202, 514, 565, 615
XceI	RCATGY	1 cut(s)	127
ZrmI	AGTACT	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.