Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001128

Physical Location & Seq

Genomic Coordinates Forward (+)

36241099 .. 36242823

Gene Structure 1725 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0208000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1725 bp

ATGCACTGGCTACCTCCCTTCATTACTAAGGGTTGGGATTTTACAGCACACACGCTCTGCGCGATGGAGGATGTAATAGGAGGTTTTGTTCGGAAACTTGCTTTGACGGAGGAGGAGGCGGTAGAAGTGGTCCTCCCTACAAAGCGACTCAAACAACCACCTAAACAATTTTTTCTGGTGGGTGAGTTGTTGACAGACAAGCAATATCGAATGGATTCTTTGATTAGTACACTTCGGGGACTCTGGATCCCAGATGCCGCCCGATCAGATCGGTCCAGGATGGTGGTGTGTCCGCTGGAGGGAAGTCGAAGATTGCTGTTTTCTTTTTCATACGCTTCAGATCTGAACTGGATCGTTACGAGGGCGCCGTGGTCCTATGAGCGGGCTCTCTTTGCGGTGGCGGTGACTGATGGAATGGTTGATCCATTGAAGGTCTCTCTGCAGACTCAATACTTCTGGCTGAGAATAAGGGAGATTCCGCCTCTTTATATGGATAAGTATACGGGGGAAGGGATTGGCAATGCTGTTGGAACATATGTTAGAACGGGTACTGACCGAAATGGGAGCTGCTTGGGTAGTTATCTCCGGGTGAGAGTTGGGATTGATATTGCGAAGCCATTAAGTAAGGGAGTCTCGATTCCGAGCGCAGCTTGGGCAATGAACAAACTATTCGAGTTGGAGTATGAGAGATTGCCTCATTTTTGTCTGTACTATGGTTTGATCTCGCGTACAGGGTTTAGTTGTCCCCGTAGATTATCCGGTGCAATCATTGAGCATACGTATGATGTCCTACTTAATGCTGAGAAGAAAGAGGCTTGGTTGGCTAAGCAGGAGGAAGAGCGGAAAAGAGATACAGAGGGGTCAAGTGGTGGTGGCACTAGGTTTGGCCTATACCGGGTTGAGAAGACTGGGTGGTCTATGGTGGCGCCAGAGTTCCCCACTATCGGACTGATTCGAACTAGGGAGGAATTGGAAGCGGAGTTTGATCTCCCTATTCAGAGGAATGAAAATGATATGGATATTGTGGAGGTGGAGACAAGCGGAGGGGGCTCCGACGGGCTGAATCGGAAACGGAGGAGGCTGGAAGAGCTGTGTGGCCAACAGGATGCGGTGGCCGGAGAGGGCCTCACGGAGGTGCCCATTTTGGAATGCTCAGATTTTGGGATGGGTTTACATTCGGCCCCGGTGATTAAGCAATCATCATTAAATGTCCCGCCTGGTGGTCCGTTGATAGCGGATCGGAGTTTATTCCAGAAGGAGGTAACCTGGCGTGATTCTGGGGAAAAACGGATCTCCAGTGAGGTGGTAGGCAGGGTTGAATTGGGGATGAGCTCGACCAATCCGGGGGCGGGTGCTGGGGAAGGGAAGTTGTTTGAAAGCGTGAAATCTGTGAGATTGACGGCGCAATCTGTGGAGGCAGGCCAGGCTACCTTCAATGTTGAGTTAATGGGTAAGAAAGGAAAGCCAAGACGGGCTAAGATGGAGGGATCACCTGAGGCTCACGGCTCAGCTAGGGCAAGTGGGAGACAGACACGGGCCAGTTTGTCTCCTTCTAATACTGGGCCCACTGAGAAGATTCTAGAAAGTTCCAAGAAGGGGGGGAAGAAGGGCTTCTGCATGCGAAAAATCCCCAGTTTTTCAAGCCGGAAATTAAAGATGAGTTCTGAAGGCACTCTTAAGCATTCTTCCGTGATGGGTCCGGATTTGGCCCATCACGAGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004012 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006900 GO:0006996 GO:0008150 GO:0009987 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031984 GO:0033036 GO:0034204 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045332 GO:0048193 GO:0048194 GO:0051179 GO:0051234 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0071944 GO:0097035 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase E1-E2_ATPase PhoLip_ATPase_C PhoLip_ATPase_N

Protein Analysis

574

Amino Acids

63.53

Weight (kDa)

8.89

Isoelectric Point (pI)

47.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66055 AT5G66055
fragaria_vesca	FvH4_1g10990 FvH4_1g10990
malus_domestica	MD15G1236900.v1.1
prunus_persica	Prupe.7G175600_v2.0.a1
pyrus_communis	pycom15g21070
rosa_chinensis	RchiOBHm_Chr1g0316921 RchiOBHm_Chr1g0316981 RchiOBHm_Chr2g0098251 RchiOBHm_Chr2g0145411 RchiOBHm_Chr4g0390291 RchiOBHm_Chr5g0073551
rosa_laevigata	RLG00000001656 RLG00000016779 RLG00000027817 RLG00000030637 RLG00000032089
rosa_multiflora	Rmu_co8173478.1_g000001 Rmu_sc0000104.1_g000031 Rmu_sc0000712.1_g000024 Rmu_sc0001298.1_g000058 Rmu_sc0002048.1_g000015 Rmu_sc0002398.1_g000019 Rmu_sc0004138.1_g000005 Rmu_sc0007472.1_g000006 Rmu_sc0009922.1_g000006
rosa_roxburghii	Rroxscaffold_2G00094620 Rroxscaffold_2G00144120
rosa_rugosa	Rorug02G0071600 Rorug02G0547800 Rorug04G0008500 Rorug04G0008600 Rorug04G0008600 Rorug04G0208000 Rorug05G0455100.1
rosa_samantha	Rh1AG024600 Rh1AG024700 Rh1CG022000 Rh1CG022900 Rh1DG021700 Rh2AG118600 Rh2BG121700 Rh2BG300700 Rh2BG456300 Rh2CG123300 Rh2CG279400 Rh2DG123300 Rh2DG466200 Rh4AG245100 Rh4BG023700 Rh4BG025500 Rh4BG250300 Rh4DG100600 Rh5DG257900 Rh6AG184700
rosa_wichuraiana	Rw1G001670 Rw2G009310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	913
AccB1I	GGYRCC	3 cut(s)	364, 925, 1135
AccBSI	CCGCTC	2 cut(s)	382, 841
AccI	GTMKAC	1 cut(s)	500
AccII	CGCG	2 cut(s)	62, 727
AccIII	TCCGGA	1 cut(s)	1699
AclWI	GGATC	7 cut(s)	241, 254, 359, 416, 1245, 1298, 1495
AcoI	YGGCCR	2 cut(s)	1096, 1113
AcuI	CTGAAG	2 cut(s)	321, 1686
AcyI	GRCGYC	2 cut(s)	365, 926
AfaI	GTAC	4 cut(s)	229, 550, 710, 730
AflII	CTTAAG	1 cut(s)	1676
AgsI	TTSAA	5 cut(s)	430, 1319, 1376, 1435, 1641
AjnI	CCWGG	4 cut(s)	275, 1216, 1265, 1422
AleI	CACNNNNGTG	1 cut(s)	1133
AloI	GAACNNNNNNTCC	2 cut(s)	72, 104
AluBI	AGCT	5 cut(s)	567, 650, 1090, 1332, 1511
AluI	AGCT	5 cut(s)	567, 650, 1090, 1332, 1511
Alw21I	GWGCWC	1 cut(s)	1334
Alw26I	GTCTC	5 cut(s)	439, 637, 1028, 1519, 1551
AlwI	GGATC	7 cut(s)	241, 254, 359, 416, 1245, 1298, 1495
Aor13HI	TCCGGA	1 cut(s)	1699
AoxI	GGCC	9 cut(s)	886, 1096, 1113, 1123, 1179, 1420, 1536, 1562, 1707
ApaI	GGGCCC	1 cut(s)	1566
ApeKI	GCWGC	2 cut(s)	567, 647
Asp700I	GAANNNNTTC	2 cut(s)	214, 1610
AspLEI	GCGC	5 cut(s)	62, 367, 647, 928, 1405
AsuC2I	CCSGG	4 cut(s)	587, 896, 1184, 1344
AsuHPI	GGTGA	5 cut(s)	194, 415, 601, 1198, 1482
AsuII	TTCGAA	1 cut(s)	955
AvaII	GGWCC	5 cut(s)	130, 273, 372, 1223, 1697
AxyI	CCTNAGG	1 cut(s)	1494
BaeGI	GKGCMC	2 cut(s)	1140, 1566
BalI	TGGCCA	1 cut(s)	1098
BamHI	GGATCC	1 cut(s)	246
BanI	GGYRCC	3 cut(s)	364, 925, 1135
BanII	GRGCYC	4 cut(s)	388, 1052, 1334, 1566
BauI	CACGAG	1 cut(s)	1715
BbsI	GAAGAC	1 cut(s)	911
Bbv12I	GWGCWC	1 cut(s)	1334
BbvI	GCAGC	2 cut(s)	554, 659
BccI	CCATC	7 cut(s)	58, 274, 404, 1159, 1474, 1687, 1719
BceAI	ACGGC	3 cut(s)	352, 1416, 1519
BciT130I	CCWGG	4 cut(s)	277, 1218, 1267, 1424
BcnI	CCSGG	4 cut(s)	587, 896, 1184, 1344
BcoDI	GTCTC	5 cut(s)	439, 637, 1028, 1519, 1551
BfaI	CTAG	4 cut(s)	879, 960, 1512, 1580
BfmI	CTRYAG	1 cut(s)	440
BfoI	RGCGCY	2 cut(s)	368, 929
BfrI	CTTAAG	1 cut(s)	1676
BglII	AGATCT	1 cut(s)	340
BisI	GCNGC	3 cut(s)	258, 568, 648
BlpI	GCTNAGC	2 cut(s)	825, 1507
BlsI	GCNGC	3 cut(s)	259, 569, 649
Bme1390I	CCNGG	8 cut(s)	277, 587, 896, 1184, 1218, 1267, 1344, 1424
Bme18I	GGWCC	5 cut(s)	130, 273, 372, 1223, 1697
BmiI	GGNNCC	8 cut(s)	248, 366, 927, 1051, 1137, 1182, 1564, 1698
BmrFI	CCNGG	8 cut(s)	277, 587, 896, 1184, 1218, 1267, 1344, 1424
BmrI	ACTGGG	3 cut(s)	918, 1569, 1626
BmsI	GCATC	2 cut(s)	244, 1096
BmuI	ACTGGG	3 cut(s)	918, 1569, 1626
BpiI	GAAGAC	1 cut(s)	911
BplI	GAGNNNNNCTC	4 cut(s)	679, 711, 1110, 1142
BpmI	CTGGAG	2 cut(s)	317, 1279
Bpu1102I	GCTNAGC	2 cut(s)	825, 1507
Bpu14I	TTCGAA	1 cut(s)	955
BpuMI	CCSGG	4 cut(s)	587, 896, 1184, 1344
BsaAI	YACGTR	1 cut(s)	780
BsaHI	GRCGYC	2 cut(s)	365, 926
BsaI	GGTCTC	1 cut(s)	439
BsaJI	CCNNGG	3 cut(s)	368, 1182, 1343
BsaWI	WCCGGW	2 cut(s)	758, 1699
BsaXI	ACNNNNNCTCC	2 cut(s)	72, 102
Bse1I	ACTGG	7 cut(s)	11, 353, 913, 1296, 1539, 1564, 1632
Bse21I	CCTNAGG	1 cut(s)	1494
Bse3DI	GCAATG	2 cut(s)	526, 663
BseAI	TCCGGA	1 cut(s)	1699
BseBI	CCWGG	4 cut(s)	277, 1218, 1267, 1424
BseDI	CCNNGG	3 cut(s)	368, 1182, 1343
BseGI	GGATG	5 cut(s)	76, 285, 1111, 1170, 1332
BseMI	GCAATG	2 cut(s)	526, 663
BseMII	CTCAG	6 cut(s)	452, 792, 1167, 1485, 1521, 1560
BseNI	ACTGG	7 cut(s)	11, 353, 913, 1296, 1539, 1564, 1632
BseRI	GAGGAG	3 cut(s)	125, 128, 1090
BseSI	GKGCMC	2 cut(s)	1140, 1566
BseXI	GCAGC	2 cut(s)	554, 659
BseYI	CCCAGC	1 cut(s)	1355
Bsh1236I	CGCG	2 cut(s)	62, 727
BshFI	GGCC	9 cut(s)	888, 1098, 1115, 1125, 1181, 1422, 1538, 1564, 1709
BshNI	GGYRCC	3 cut(s)	364, 925, 1135
BsiHKAI	GWGCWC	1 cut(s)	1334
BsiSI	CCGG	8 cut(s)	586, 759, 895, 1116, 1184, 1343, 1645, 1700
BslFI	GGGAC	3 cut(s)	252, 729, 1196
BsmAI	GTCTC	5 cut(s)	439, 637, 1028, 1519, 1551
BsmFI	GGGAC	3 cut(s)	252, 729, 1196
BsmI	GAATGC	2 cut(s)	1154, 1681
BsnI	GGCC	9 cut(s)	888, 1098, 1115, 1125, 1181, 1422, 1538, 1564, 1709
Bso31I	GGTCTC	1 cut(s)	439
Bsp119I	TTCGAA	1 cut(s)	955
Bsp120I	GGGCCC	1 cut(s)	1562
Bsp1286I	GDGCHC	5 cut(s)	388, 1052, 1140, 1334, 1566
Bsp13I	TCCGGA	1 cut(s)	1699
Bsp1720I	GCTNAGC	2 cut(s)	825, 1507
BspANI	GGCC	9 cut(s)	888, 1098, 1115, 1125, 1181, 1422, 1538, 1564, 1709
BspCNI	CTCAG	6 cut(s)	453, 793, 1166, 1486, 1520, 1561
BspEI	TCCGGA	1 cut(s)	1699
BspFNI	CGCG	2 cut(s)	62, 727
BspLI	GGNNCC	8 cut(s)	248, 366, 927, 1051, 1137, 1182, 1564, 1698
BspMAI	CTGCAG	1 cut(s)	444
BspPI	GGATC	7 cut(s)	241, 254, 359, 416, 1245, 1298, 1495
BspQI	GCTCTTC	2 cut(s)	831, 1080
BspT104I	TTCGAA	1 cut(s)	955
BspT107I	GGYRCC	3 cut(s)	364, 925, 1135
BspTI	CTTAAG	1 cut(s)	1676
BspTNI	GGTCTC	1 cut(s)	439
BsrBI	CCGCTC	2 cut(s)	382, 841
BsrDI	GCAATG	2 cut(s)	526, 663
BsrI	ACTGG	7 cut(s)	11, 353, 913, 1296, 1539, 1564, 1632
BssECI	CCNNGG	3 cut(s)	368, 1182, 1343
BssNAI	GTATAC	1 cut(s)	501
BssNI	GRCGYC	2 cut(s)	365, 926
BssSI	CACGAG	1 cut(s)	1715
Bst1107I	GTATAC	1 cut(s)	501
Bst2BI	CACGAG	1 cut(s)	1715
Bst2UI	CCWGG	4 cut(s)	277, 1218, 1267, 1424
Bst6I	CTCTTC	2 cut(s)	831, 1080
BstACI	GRCGYC	2 cut(s)	365, 926
BstAFI	CTTAAG	1 cut(s)	1676
BstBAI	YACGTR	1 cut(s)	780
BstBI	TTCGAA	1 cut(s)	955
BstC8I	GCNNGC	3 cut(s)	384, 1420, 1619
BstDEI	CTNAG	9 cut(s)	27, 461, 801, 825, 1153, 1476, 1494, 1507, 1569
BstDSI	CCRYGG	1 cut(s)	368
BstEII	GGTNACC	1 cut(s)	1261
BstENI	CCTNNNNNAGG	1 cut(s)	1130
BstF5I	GGATG	5 cut(s)	76, 285, 1111, 1170, 1332
BstFNI	CGCG	2 cut(s)	62, 727
BstH2I	RGCGCY	2 cut(s)	368, 929
BstHHI	GCGC	5 cut(s)	62, 367, 647, 928, 1405
BstMAI	GTCTC	5 cut(s)	439, 637, 1028, 1519, 1551
BstMWI	GCNNNNNNNGC	6 cut(s)	392, 653, 821, 1047, 1087, 1424
BstNI	CCWGG	4 cut(s)	277, 1218, 1267, 1424
BstNSI	RCATGY	1 cut(s)	1621
BstPI	GGTNACC	1 cut(s)	1261
BstSCI	CCNGG	8 cut(s)	275, 585, 894, 1182, 1216, 1265, 1342, 1422
BstSFI	CTRYAG	1 cut(s)	440
BstSLI	GKGCMC	2 cut(s)	1140, 1566
BstSNI	TACGTA	1 cut(s)	780
BstUI	CGCG	2 cut(s)	62, 727
BstV1I	GCAGC	2 cut(s)	554, 659
BstV2I	GAAGAC	1 cut(s)	911
BstX2I	RGATCY	3 cut(s)	246, 340, 1290
BstXI	CCANNNNNNTGG	2 cut(s)	283, 1303
BstYI	RGATCY	3 cut(s)	246, 340, 1290
BstZ17I	GTATAC	1 cut(s)	501
Bsu36I	CCTNAGG	1 cut(s)	1494
BsuRI	GGCC	9 cut(s)	888, 1098, 1115, 1125, 1181, 1422, 1538, 1564, 1709
BtgI	CCRYGG	1 cut(s)	368
BtgZI	GCGATG	1 cut(s)	77
BtsCI	GGATG	5 cut(s)	76, 285, 1111, 1170, 1332
BtsIMutI	CAGTG	3 cut(s)	4, 1303, 1566
Cac8I	GCNNGC	3 cut(s)	384, 1420, 1619
CfoI	GCGC	5 cut(s)	62, 367, 647, 928, 1405
Csp6I	GTAC	4 cut(s)	228, 549, 709, 729
CviAII	CATG	2 cut(s)	1618, 1722
CviQI	GTAC	4 cut(s)	228, 549, 709, 729
DdeI	CTNAG	9 cut(s)	27, 461, 801, 825, 1153, 1476, 1494, 1507, 1569
DinI	GGCGCC	2 cut(s)	366, 927
DrdI	GACNNNNNNGTC	1 cut(s)	913
DseDI	GACNNNNNNGTC	1 cut(s)	913
EaeI	YGGCCR	2 cut(s)	1096, 1113
Eam1104I	CTCTTC	2 cut(s)	831, 1080
EarI	CTCTTC	2 cut(s)	831, 1080
EciI	GGCGGA	1 cut(s)	468
Ecl136II	GAGCTC	1 cut(s)	1332
Eco105I	TACGTA	1 cut(s)	780
Eco24I	GRGCYC	4 cut(s)	388, 1052, 1334, 1566
Eco31I	GGTCTC	1 cut(s)	439
Eco47I	GGWCC	5 cut(s)	130, 273, 372, 1223, 1697
Eco53kI	GAGCTC	1 cut(s)	1332
Eco57I	CTGAAG	2 cut(s)	321, 1686
Eco81I	CCTNAGG	1 cut(s)	1494
Eco91I	GGTNACC	1 cut(s)	1261
EcoICRI	GAGCTC	1 cut(s)	1332
EcoNI	CCTNNNNNAGG	1 cut(s)	1130
EcoO109I	RGGNCCY	1 cut(s)	1123
EcoO65I	GGTNACC	1 cut(s)	1261
EcoRII	CCWGG	4 cut(s)	275, 1216, 1265, 1422
EcoT38I	GRGCYC	4 cut(s)	388, 1052, 1334, 1566
EgeI	GGCGCC	2 cut(s)	366, 927
EheI	GGCGCC	2 cut(s)	366, 927
FaeI	CATG	2 cut(s)	1621, 1725
FalI	AAGNNNNNCTT	4 cut(s)	1595, 1627, 1659, 1691
FaqI	GGGAC	3 cut(s)	252, 729, 1196
FatI	CATG	2 cut(s)	1617, 1721
FauI	CCCGC	3 cut(s)	375, 1221, 1342
FauNDI	CATATG	1 cut(s)	535
FblI	GTMKAC	1 cut(s)	500
Fnu4HI	GCNGC	3 cut(s)	258, 568, 648
FokI	GGATG	5 cut(s)	83, 292, 1118, 1177, 1339
FriOI	GRGCYC	4 cut(s)	388, 1052, 1334, 1566
Fsp4HI	GCNGC	3 cut(s)	258, 568, 648
FspBI	CTAG	4 cut(s)	879, 960, 1512, 1580
GlaI	GCGC	5 cut(s)	61, 366, 646, 927, 1404
GluI	GCNGC	3 cut(s)	258, 568, 648
GsaI	CCCAGC	1 cut(s)	1359
GsuI	CTGGAG	2 cut(s)	317, 1279
HaeII	RGCGCY	2 cut(s)	368, 929
HaeIII	GGCC	9 cut(s)	888, 1098, 1115, 1125, 1181, 1422, 1538, 1564, 1709
HapII	CCGG	8 cut(s)	586, 759, 895, 1116, 1184, 1343, 1645, 1700
HhaI	GCGC	5 cut(s)	62, 367, 647, 928, 1405
Hin1I	GRCGYC	2 cut(s)	365, 926
Hin1II	CATG	2 cut(s)	1621, 1725
Hin6I	GCGC	5 cut(s)	60, 365, 645, 926, 1403
HinP1I	GCGC	5 cut(s)	60, 365, 645, 926, 1403
HincII	GTYRAC	1 cut(s)	192
HindII	GTYRAC	1 cut(s)	192
HpaII	CCGG	8 cut(s)	586, 759, 895, 1116, 1184, 1343, 1645, 1700
HphI	GGTGA	5 cut(s)	194, 415, 601, 1198, 1482
Hpy166II	GTNNAC	4 cut(s)	192, 230, 501, 1172
Hpy188III	TCNNGA	6 cut(s)	244, 634, 1252, 1580, 1700, 1715
Hpy8I	GTNNAC	4 cut(s)	192, 230, 501, 1172
Hpy99I	CGWCG	1 cut(s)	1058
HpyCH4IV	ACGT	1 cut(s)	779
HpyCH4V	TGCA	4 cut(s)	4, 442, 764, 1617
HpyF10VI	GCNNNNNNNGC	6 cut(s)	392, 653, 821, 1047, 1087, 1424
HpyF3I	CTNAG	9 cut(s)	27, 461, 801, 825, 1153, 1476, 1494, 1507, 1569
HpySE526I	ACGT	1 cut(s)	779
Hsp92I	GRCGYC	2 cut(s)	365, 926
Hsp92II	CATG	2 cut(s)	1621, 1725
HspAI	GCGC	5 cut(s)	60, 365, 645, 926, 1403
KasI	GGCGCC	2 cut(s)	364, 925
Kpn2I	TCCGGA	1 cut(s)	1699
LguI	GCTCTTC	2 cut(s)	831, 1080
LmnI	GCTCC	2 cut(s)	564, 1055
Lsp1109I	GCAGC	2 cut(s)	554, 659
LweI	GCATC	2 cut(s)	244, 1096
MaeI	CTAG	4 cut(s)	879, 960, 1512, 1580
MaeII	ACGT	1 cut(s)	779
MaeIII	GTNAC	3 cut(s)	355, 403, 1261
MbiI	CCGCTC	2 cut(s)	382, 841
MboII	GAAGA	8 cut(s)	321, 817, 848, 916, 1097, 1585, 1615, 1677
MflI	RGATCY	3 cut(s)	246, 340, 1290
MhlI	GDGCHC	5 cut(s)	388, 1052, 1140, 1334, 1566
MlsI	TGGCCA	1 cut(s)	1098
MluCI	AATT	4 cut(s)	167, 968, 1319, 1649
MluNI	TGGCCA	1 cut(s)	1098
Mly113I	GGCGCC	2 cut(s)	365, 926
MlyI	GAGTC	4 cut(s)	141, 234, 439, 639
MmeI	TCCRAC	3 cut(s)	508, 657, 1077
Mox20I	TGGCCA	1 cut(s)	1098
MroI	TCCGGA	1 cut(s)	1699
MroXI	GAANNNNTTC	2 cut(s)	214, 1610
MscI	TGGCCA	1 cut(s)	1098
MseI	TTAA	7 cut(s)	620, 795, 1191, 1205, 1445, 1652, 1677
MslI	CAYNNNNRTG	2 cut(s)	780, 1133
Msp20I	TGGCCA	1 cut(s)	1098
MspA1I	CMGCKG	1 cut(s)	295
MspCI	CTTAAG	1 cut(s)	1676
MspI	CCGG	8 cut(s)	586, 759, 895, 1116, 1184, 1343, 1645, 1700
MspR9I	CCNGG	8 cut(s)	277, 587, 896, 1184, 1218, 1267, 1344, 1424
Mva1269I	GAATGC	2 cut(s)	1154, 1681
MvaI	CCWGG	4 cut(s)	277, 1218, 1267, 1424
MvnI	CGCG	2 cut(s)	62, 727
MwoI	GCNNNNNNNGC	6 cut(s)	392, 653, 821, 1047, 1087, 1424
NarI	GGCGCC	2 cut(s)	365, 926
NciI	CCSGG	4 cut(s)	587, 896, 1184, 1344
NdeI	CATATG	1 cut(s)	535
NlaIII	CATG	2 cut(s)	1621, 1725
NlaIV	GGNNCC	8 cut(s)	248, 366, 927, 1051, 1137, 1182, 1564, 1698
NmuCI	GTSAC	1 cut(s)	403
NspI	RCATGY	1 cut(s)	1621
NspV	TTCGAA	1 cut(s)	955
OliI	CACNNNNGTG	1 cut(s)	1133
PaeI	GCATGC	1 cut(s)	1621
PciSI	GCTCTTC	2 cut(s)	831, 1080
PcsI	WCGNNNNNNNCGW	2 cut(s)	59, 365
PctI	GAATGC	2 cut(s)	1154, 1681
PdmI	GAANNNNTTC	2 cut(s)	214, 1610
PfeI	GAWTC	7 cut(s)	215, 475, 637, 952, 1063, 1274, 1576
PfoI	TCCNGGA	1 cut(s)	275
PkrI	GCNGC	3 cut(s)	259, 569, 649
PleI	GAGTC	4 cut(s)	141, 234, 439, 638
PluTI	GGCGCC	2 cut(s)	368, 929
PpsI	GAGTC	4 cut(s)	141, 234, 439, 638
Ppu21I	YACGTR	1 cut(s)	780
Psp124BI	GAGCTC	1 cut(s)	1334
Psp6I	CCWGG	4 cut(s)	275, 1216, 1265, 1422
PspEI	GGTNACC	1 cut(s)	1261
PspFI	CCCAGC	1 cut(s)	1355
PspGI	CCWGG	4 cut(s)	275, 1216, 1265, 1422
PspN4I	GGNNCC	8 cut(s)	248, 366, 927, 1051, 1137, 1182, 1564, 1698
PspOMI	GGGCCC	1 cut(s)	1562
PstI	CTGCAG	1 cut(s)	444
PsuI	RGATCY	3 cut(s)	246, 340, 1290
RsaI	GTAC	4 cut(s)	229, 550, 710, 730
RsaNI	GTAC	4 cut(s)	228, 549, 709, 729
RseI	CAYNNNNRTG	2 cut(s)	780, 1133
SacI	GAGCTC	1 cut(s)	1334
SapI	GCTCTTC	2 cut(s)	831, 1080
SaqAI	TTAA	7 cut(s)	620, 795, 1191, 1205, 1445, 1652, 1677
SatI	GCNGC	3 cut(s)	258, 568, 648
SchI	GAGTC	4 cut(s)	141, 234, 439, 639
ScrFI	CCNGG	8 cut(s)	277, 587, 896, 1184, 1218, 1267, 1344, 1424
SduI	GDGCHC	5 cut(s)	388, 1052, 1140, 1334, 1566
SfaNI	GCATC	2 cut(s)	244, 1096
SfcI	CTRYAG	1 cut(s)	440
SfoI	GGCGCC	2 cut(s)	366, 927
SfuI	TTCGAA	1 cut(s)	955
SinI	GGWCC	5 cut(s)	130, 273, 372, 1223, 1697
SmiMI	CAYNNNNRTG	2 cut(s)	780, 1133
SmlI	CTYRAG	1 cut(s)	1676
SmoI	CTYRAG	1 cut(s)	1676
SnaBI	TACGTA	1 cut(s)	780
SphI	GCATGC	1 cut(s)	1621
Sse9I	AATT	4 cut(s)	167, 968, 1319, 1649
SspDI	GGCGCC	2 cut(s)	364, 925
SspMI	CTAG	4 cut(s)	879, 960, 1512, 1580
SstI	GAGCTC	1 cut(s)	1334
StyD4I	CCNGG	8 cut(s)	275, 585, 894, 1182, 1216, 1265, 1342, 1422
TaiI	ACGT	1 cut(s)	782
TaqI	TCGA	6 cut(s)	208, 307, 635, 672, 955, 1334
TaqII	GACCGA	2 cut(s)	261, 570
TasI	AATT	4 cut(s)	167, 968, 1319, 1649
TatI	WGTACW	2 cut(s)	227, 708
TauI	GCSGC	1 cut(s)	260
TfiI	GAWTC	7 cut(s)	215, 475, 637, 952, 1063, 1274, 1576
Tru1I	TTAA	7 cut(s)	620, 795, 1191, 1205, 1445, 1652, 1677
Tru9I	TTAA	7 cut(s)	620, 795, 1191, 1205, 1445, 1652, 1677
TscAI	CASTG	2 cut(s)	1303, 1573
TseFI	GTSAC	1 cut(s)	403
TseI	GCWGC	2 cut(s)	567, 647
Tsp45I	GTSAC	1 cut(s)	403
TspDTI	ATGAA	4 cut(s)	10, 318, 674, 1020
TspGWI	ACGGA	6 cut(s)	122, 1087, 1145, 1215, 1303, 1678
TspRI	CASTG	2 cut(s)	1303, 1573
Vha464I	CTTAAG	1 cut(s)	1676
VpaK11BI	GGWCC	5 cut(s)	130, 273, 372, 1223, 1697
XagI	CCTNNNNNAGG	1 cut(s)	1130
XbaI	TCTAGA	1 cut(s)	1579
XceI	RCATGY	1 cut(s)	1621
XmiI	GTMKAC	1 cut(s)	500
XmnI	GAANNNNTTC	2 cut(s)	214, 1610
XspI	CTAG	4 cut(s)	879, 960, 1512, 1580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.