Rh1DG021700

Ankyrin repeat domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0001128
Physical Location & Seq
Reverse (-)
3383283 .. 3384465
1183 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG021700.1

Sequence Viewer

Length: 399 bp
ATGGCTTCTGCCACCTCTAGTAAATGGTTGCCCCTTCACACTCTTGCCGTATCAGGAGAATATTACATTATGCACGCTTTATCAAAACATAAAGCTGATATTAATGCTGCGGATAAGGATGATTGGACTGTTCTTGACAAGGCAATTATCGGTAAAAACCAGGCCATTACAGACTATCTTCTCAGAGATTCGGCTAATCCATTTGTTCGTGATAAAGGGAGTCGGGTGCATCTCCTAAAGTGGAGAAAAGCTTTCTTCGTTTATGATAAAGCAAATATCAGTGACGGATATGCTTGTGCATTTGTTGACGTGGAATTGCAGGCCAGGAGTTTTAGCTTTGTCATGTCGACACCAGATATTGCAGGAATATTAGAGAATTGCAATTCCAAGAATTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
Ank_2 Ank_4 Ank_5 RRM_1

Protein Analysis

132

Amino Acids

14.79

Weight (kDa)

7.78

Isoelectric Point (pI)

34.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_4 PF13637 12 - 61 1.9e-06 Ankyrin repeats (many copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 347
AciI CCGC 1 cut(s) 110
AcsI RAATTY 1 cut(s) 391
AjiI CACGTC 1 cut(s) 310
AjnI CCWGG 2 cut(s) 159, 323
AluBI AGCT 3 cut(s) 95, 251, 336
AluI AGCT 3 cut(s) 95, 251, 336
AoxI GGCC 2 cut(s) 162, 321
ApeKI GCWGC 1 cut(s) 107
ApoI RAATTY 1 cut(s) 391
AseI ATTAAT 1 cut(s) 102
BbvI GCAGC 1 cut(s) 94
BceAI ACGGC 1 cut(s) 32
BciT130I CCWGG 2 cut(s) 161, 325
BfaI CTAG 1 cut(s) 18
BisI GCNGC 1 cut(s) 108
BlsI GCNGC 1 cut(s) 109
Bme1390I CCNGG 2 cut(s) 161, 325
BmgBI CACGTC 1 cut(s) 310
BmrFI CCNGG 2 cut(s) 161, 325
BmsI GCATC 1 cut(s) 238
BseBI CCWGG 2 cut(s) 161, 325
BseGI GGATG 1 cut(s) 124
BseMII CTCAG 1 cut(s) 196
BseXI GCAGC 1 cut(s) 94
BshFI GGCC 2 cut(s) 164, 323
BsnI GGCC 2 cut(s) 164, 323
BspACI CCGC 1 cut(s) 110
BspANI GGCC 2 cut(s) 164, 323
BspCNI CTCAG 1 cut(s) 195
Bst2UI CCWGG 2 cut(s) 161, 325
Bst4CI ACNGT 1 cut(s) 130
BstC8I GCNNGC 2 cut(s) 75, 321
BstDEI CTNAG 1 cut(s) 182
BstF5I GGATG 1 cut(s) 124
BstNI CCWGG 2 cut(s) 161, 325
BstSCI CCNGG 2 cut(s) 159, 323
BstV1I GCAGC 1 cut(s) 94
BsuRI GGCC 2 cut(s) 164, 323
BtrI CACGTC 1 cut(s) 310
BtsCI GGATG 1 cut(s) 124
BtsIMutI CAGTG 1 cut(s) 286
Cac8I GCNNGC 2 cut(s) 75, 321
CviAII CATG 1 cut(s) 343
CviJI RGCY 7 cut(s) 5, 95, 164, 194, 251, 323, 336
CviKI_1 RGCY 7 cut(s) 5, 95, 164, 194, 251, 323, 336
DdeI CTNAG 1 cut(s) 182
EcoRII CCWGG 2 cut(s) 159, 323
FaeI CATG 1 cut(s) 346
FaiI YATR 5 cut(s) 71, 90, 264, 291, 344
FatI CATG 1 cut(s) 342
FblI GTMKAC 1 cut(s) 347
Fnu4HI GCNGC 1 cut(s) 108
FokI GGATG 1 cut(s) 131
Fsp4HI GCNGC 1 cut(s) 108
FspBI CTAG 1 cut(s) 18
GluI GCNGC 1 cut(s) 108
HaeIII GGCC 2 cut(s) 164, 323
Hin1II CATG 1 cut(s) 346
HincII GTYRAC 2 cut(s) 307, 348
HindII GTYRAC 2 cut(s) 307, 348
HindIII AAGCTT 1 cut(s) 249
HinfI GANTC 2 cut(s) 188, 220
Hpy166II GTNNAC 2 cut(s) 307, 348
Hpy188I TCNGA 1 cut(s) 185
Hpy188III TCNNGA 3 cut(s) 54, 134, 209
Hpy8I GTNNAC 2 cut(s) 307, 348
HpyAV CCTTC 1 cut(s) 44
HpyCH4III ACNGT 1 cut(s) 130
HpyCH4IV ACGT 1 cut(s) 309
HpyCH4V TGCA 6 cut(s) 73, 229, 299, 319, 362, 381
HpyF3I CTNAG 1 cut(s) 182
HpySE526I ACGT 1 cut(s) 309
Hsp92II CATG 1 cut(s) 346
LpnPI CCDG 8 cut(s) 39, 146, 173, 305, 310, 337, 348, 366
Lsp1109I GCAGC 1 cut(s) 94
LweI GCATC 1 cut(s) 238
MaeI CTAG 1 cut(s) 18
MaeII ACGT 1 cut(s) 309
MaeIII GTNAC 1 cut(s) 281
MboII GAAGA 2 cut(s) 170, 247
MluCI AATT 5 cut(s) 144, 314, 376, 382, 391
MlyI GAGTC 1 cut(s) 229
MnlI CCTC 1 cut(s) 25
MseI TTAA 1 cut(s) 102
MspR9I CCNGG 2 cut(s) 161, 325
MvaI CCWGG 2 cut(s) 161, 325
NlaIII CATG 1 cut(s) 346
NmuCI GTSAC 1 cut(s) 281
PfeI GAWTC 1 cut(s) 188
PkrI GCNGC 1 cut(s) 109
PleI GAGTC 1 cut(s) 228
PpsI GAGTC 1 cut(s) 228
PshBI ATTAAT 1 cut(s) 102
Psp6I CCWGG 2 cut(s) 159, 323
PspGI CCWGG 2 cut(s) 159, 323
SalI GTCGAC 1 cut(s) 346
SaqAI TTAA 1 cut(s) 102
SatI GCNGC 1 cut(s) 108
SchI GAGTC 1 cut(s) 229
ScrFI CCNGG 2 cut(s) 161, 325
SetI ASST 5 cut(s) 17, 97, 253, 312, 338
SfaNI GCATC 1 cut(s) 238
Sse9I AATT 5 cut(s) 144, 314, 376, 382, 391
SsiI CCGC 1 cut(s) 110
SspI AATATT 2 cut(s) 62, 369
SspMI CTAG 1 cut(s) 18
StyD4I CCNGG 2 cut(s) 159, 323
TaaI ACNGT 1 cut(s) 130
TaiI ACGT 1 cut(s) 312
TaqI TCGA 1 cut(s) 347
TasI AATT 5 cut(s) 144, 314, 376, 382, 391
TfiI GAWTC 1 cut(s) 188
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TscAI CASTG 1 cut(s) 286
TseFI GTSAC 1 cut(s) 281
TseI GCWGC 1 cut(s) 107
Tsp45I GTSAC 1 cut(s) 281
TspGWI ACGGA 1 cut(s) 300
TspRI CASTG 1 cut(s) 286
VspI ATTAAT 1 cut(s) 102
XapI RAATTY 1 cut(s) 391
XmiI GTMKAC 1 cut(s) 347
XspI CTAG 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.