Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002398.1

Orthogroup ID

OG0001128

Physical Location & Seq

Genomic Coordinates Forward (+)

74739 .. 76321

Gene Structure 1583 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002398.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

atgctcatatcaacgagtagatcaaaatcaggaatagaaactgtccctgaggtggctggaaaccgccggaaaacaccaccacagtggcggcaccgccactggtccaaagatgtggaggcaaacaatcgaaaggtgaaagtgtatggtaggaattatacattcattgagaccagatggaagaagctcagagttggtgatcttgtcaaggtgcacaaggatgagtactttcttgctgatttgcttttgctttcatcaagctatgaggatggcatttgctatgtggaaactatgaaccttgatggagaaacaaatttaaaattgaaccatgcactggaggcgacatcccatcttcatgatgaaaattccttggaaagatttagggcagtgatcaagtgtgaggacccaaataaaattctatattcatttgttgggactttgttctataacggcatagaacacccactttccttgcaacggatgctgaaaaatacagaatatgtccatggatttgttgttttcactgggcatgatacagaattgcggcaaagttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004012 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006900 GO:0006996 GO:0008150 GO:0009987 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031984 GO:0033036 GO:0034204 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045332 GO:0048193 GO:0048194 GO:0051179 GO:0051234 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0071944 GO:0097035 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase E1-E2_ATPase PhoLip_ATPase_C PhoLip_ATPase_N

Protein Analysis

183

Amino Acids

21.33

Weight (kDa)

8.47

Isoelectric Point (pI)

38.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66055 AT5G66055
fragaria_vesca	FvH4_1g10990 FvH4_1g10990
malus_domestica	MD15G1236900.v1.1
prunus_persica	Prupe.7G175600_v2.0.a1
pyrus_communis	pycom15g21070
rosa_chinensis	RchiOBHm_Chr1g0316921 RchiOBHm_Chr1g0316981 RchiOBHm_Chr2g0098251 RchiOBHm_Chr2g0145411 RchiOBHm_Chr4g0390291 RchiOBHm_Chr5g0073551
rosa_laevigata	RLG00000001656 RLG00000016779 RLG00000027817 RLG00000030637 RLG00000032089
rosa_multiflora	Rmu_co8173478.1_g000001 Rmu_sc0000104.1_g000031 Rmu_sc0000712.1_g000024 Rmu_sc0001298.1_g000058 Rmu_sc0002048.1_g000015 Rmu_sc0002398.1_g000019 Rmu_sc0004138.1_g000005 Rmu_sc0007472.1_g000006 Rmu_sc0009922.1_g000006
rosa_roxburghii	Rroxscaffold_2G00094620 Rroxscaffold_2G00144120
rosa_rugosa	Rorug02G0071600 Rorug02G0547800 Rorug04G0008500 Rorug04G0008600 Rorug04G0008600 Rorug04G0208000 Rorug05G0455100.1
rosa_samantha	Rh1AG024600 Rh1AG024700 Rh1CG022000 Rh1CG022900 Rh1DG021700 Rh2AG118600 Rh2BG121700 Rh2BG300700 Rh2BG456300 Rh2CG123300 Rh2CG279400 Rh2DG123300 Rh2DG466200 Rh4AG245100 Rh4BG023700 Rh4BG025500 Rh4BG250300 Rh4DG100600 Rh5DG257900 Rh6AG184700
rosa_wichuraiana	Rw1G001670 Rw2G009310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	90
AccB7I	CCANNNNNTGG	1 cut(s)	331
AciI	CCGC	4 cut(s)	64, 88, 94, 541
AcsI	RAATTY	3 cut(s)	310, 361, 411
AfaI	GTAC	1 cut(s)	224
AfiI	CCNNNNNNNGG	3 cut(s)	52, 331, 474
AgsI	TTSAA	1 cut(s)	322
AleI	CACNNNNGTG	1 cut(s)	82
AluBI	AGCT	2 cut(s)	184, 258
AluI	AGCT	2 cut(s)	184, 258
Alw21I	GWGCWC	1 cut(s)	213
Alw26I	GTCTC	1 cut(s)	161
Alw44I	GTGCAC	1 cut(s)	209
ApaLI	GTGCAC	1 cut(s)	209
ApoI	RAATTY	3 cut(s)	310, 361, 411
AspS9I	GGNCC	2 cut(s)	102, 400
AsuHPI	GGTGA	2 cut(s)	145, 206
AvaII	GGWCC	2 cut(s)	102, 400
AxyI	CCTNAGG	1 cut(s)	48
BaeGI	GKGCMC	1 cut(s)	213
BanI	GGYRCC	1 cut(s)	90
Bbv12I	GWGCWC	1 cut(s)	213
BccI	CCATC	4 cut(s)	168, 260, 293, 354
BceAI	ACGGC	1 cut(s)	463
BclI	TGATCA	1 cut(s)	387
BcoDI	GTCTC	1 cut(s)	161
BisI	GCNGC	2 cut(s)	89, 542
BlsI	GCNGC	2 cut(s)	90, 543
BmcAI	AGTACT	1 cut(s)	224
Bme18I	GGWCC	2 cut(s)	102, 400
BmgT120I	GGNCC	2 cut(s)	102, 400
BmiI	GGNNCC	2 cut(s)	92, 402
BmrI	ACTGGG	1 cut(s)	531
BmsI	GCATC	1 cut(s)	468
BmuI	ACTGGG	1 cut(s)	531
BpmI	CTGGAG	1 cut(s)	353
BsaBI	GATNNNNATC	1 cut(s)	25
BsaI	GGTCTC	1 cut(s)	161
BsaJI	CCNNGG	2 cut(s)	366, 502
Bsc4I	CCNNNNNNNGG	3 cut(s)	52, 331, 474
Bse1I	ACTGG	3 cut(s)	104, 336, 526
Bse21I	CCTNAGG	1 cut(s)	48
Bse8I	GATNNNNATC	1 cut(s)	25
BseDI	CCNNGG	2 cut(s)	366, 502
BseGI	GGATG	4 cut(s)	223, 271, 341, 483
BseJI	GATNNNNATC	1 cut(s)	25
BseLI	CCNNNNNNNGG	3 cut(s)	52, 331, 474
BseMII	CTCAG	2 cut(s)	39, 199
BseNI	ACTGG	3 cut(s)	104, 336, 526
BseSI	GKGCMC	1 cut(s)	213
BshNI	GGYRCC	1 cut(s)	90
BsiHKAI	GWGCWC	1 cut(s)	213
BsiSI	CCGG	1 cut(s)	67
BslFI	GGGAC	2 cut(s)	29, 445
BslI	CCNNNNNNNGG	3 cut(s)	52, 331, 474
BsmAI	GTCTC	1 cut(s)	161
BsmFI	GGGAC	2 cut(s)	29, 445
Bso31I	GGTCTC	1 cut(s)	161
Bsp1286I	GDGCHC	1 cut(s)	213
Bsp143I	GATC	3 cut(s)	20, 196, 387
Bsp19I	CCATGG	1 cut(s)	502
BspACI	CCGC	4 cut(s)	64, 88, 94, 541
BspCNI	CTCAG	2 cut(s)	40, 198
BspHI	TCATGA	1 cut(s)	352
BspLI	GGNNCC	2 cut(s)	92, 402
BspT107I	GGYRCC	1 cut(s)	90
BspTNI	GGTCTC	1 cut(s)	161
BsrI	ACTGG	3 cut(s)	104, 336, 526
BssECI	CCNNGG	2 cut(s)	366, 502
BssMI	GATC	3 cut(s)	20, 196, 387
BssT1I	CCWWGG	2 cut(s)	366, 502
Bst4CI	ACNGT	2 cut(s)	43, 84
BstAPI	GCANNNNNTGC	1 cut(s)	478
BstDEI	CTNAG	2 cut(s)	48, 185
BstDSI	CCRYGG	1 cut(s)	502
BstF5I	GGATG	4 cut(s)	223, 271, 341, 483
BstKTI	GATC	3 cut(s)	23, 199, 390
BstMAI	GTCTC	1 cut(s)	161
BstMBI	GATC	3 cut(s)	20, 196, 387
BstMWI	GCNNNNNNNGC	2 cut(s)	335, 478
BstSLI	GKGCMC	1 cut(s)	213
BstXI	CCANNNNNNTGG	2 cut(s)	84, 112
Bsu36I	CCTNAGG	1 cut(s)	48
BtgI	CCRYGG	1 cut(s)	502
BtsCI	GGATG	4 cut(s)	223, 271, 341, 483
BtsI	GCAGTG	1 cut(s)	390
BtsIMutI	CAGTG	5 cut(s)	89, 97, 329, 390, 519
CciI	TCATGA	1 cut(s)	352
Cfr13I	GGNCC	2 cut(s)	102, 400
Csp6I	GTAC	1 cut(s)	223
CspCI	CAANNNNNGTGG	2 cut(s)	450, 485
CviAII	CATG	4 cut(s)	326, 353, 503, 527
CviJI	RGCY	3 cut(s)	56, 184, 258
CviKI_1	RGCY	3 cut(s)	56, 184, 258
CviQI	GTAC	1 cut(s)	223
DdeI	CTNAG	2 cut(s)	48, 185
DpnI	GATC	3 cut(s)	22, 198, 389
DpnII	GATC	3 cut(s)	20, 196, 387
DraI	TTTAAA	1 cut(s)	315
Eco130I	CCWWGG	2 cut(s)	366, 502
Eco31I	GGTCTC	1 cut(s)	161
Eco47I	GGWCC	2 cut(s)	102, 400
Eco81I	CCTNAGG	1 cut(s)	48
EcoO109I	RGGNCCY	1 cut(s)	400
EcoT14I	CCWWGG	2 cut(s)	366, 502
ErhI	CCWWGG	2 cut(s)	366, 502
FaeI	CATG	4 cut(s)	329, 356, 506, 530
FaqI	GGGAC	2 cut(s)	29, 445
FatI	CATG	4 cut(s)	325, 352, 502, 526
FbaI	TGATCA	1 cut(s)	387
Fnu4HI	GCNGC	2 cut(s)	89, 542
FokI	GGATG	4 cut(s)	230, 278, 328, 490
Fsp4HI	GCNGC	2 cut(s)	89, 542
GluI	GCNGC	2 cut(s)	89, 542
GsuI	CTGGAG	1 cut(s)	353
HapII	CCGG	1 cut(s)	67
Hin1II	CATG	4 cut(s)	329, 356, 506, 530
HpaII	CCGG	1 cut(s)	67
HphI	GGTGA	2 cut(s)	145, 206
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	1 cut(s)	188
Hpy188III	TCNNGA	2 cut(s)	30, 353
Hpy8I	GTNNAC	1 cut(s)	211
HpyCH4III	ACNGT	2 cut(s)	43, 84
HpyCH4V	TGCA	3 cut(s)	211, 329, 472
HpyF10VI	GCNNNNNNNGC	2 cut(s)	335, 478
HpyF3I	CTNAG	2 cut(s)	48, 185
Hsp92II	CATG	4 cut(s)	329, 356, 506, 530
Ksp22I	TGATCA	1 cut(s)	387
Kzo9I	GATC	3 cut(s)	20, 196, 387
LpnPI	CCDG	8 cut(s)	15, 42, 60, 80, 85, 184, 317, 507
LweI	GCATC	1 cut(s)	468
MalI	GATC	3 cut(s)	22, 198, 389
MboI	GATC	3 cut(s)	20, 196, 387
MboII	GAAGA	2 cut(s)	190, 341
MhlI	GDGCHC	1 cut(s)	213
MluCI	AATT	6 cut(s)	151, 310, 317, 361, 411, 536
MnlI	CCTC	5 cut(s)	43, 109, 256, 328, 391
MseI	TTAA	1 cut(s)	314
MslI	CAYNNNNRTG	3 cut(s)	82, 216, 351
MspI	CCGG	1 cut(s)	67
MwoI	GCNNNNNNNGC	2 cut(s)	335, 478
NcoI	CCATGG	1 cut(s)	502
NdeII	GATC	3 cut(s)	20, 196, 387
NlaIII	CATG	4 cut(s)	329, 356, 506, 530
NlaIV	GGNNCC	2 cut(s)	92, 402
OliI	CACNNNNGTG	1 cut(s)	82
PagI	TCATGA	1 cut(s)	352
PflMI	CCANNNNNTGG	1 cut(s)	331
PkrI	GCNGC	2 cut(s)	90, 543
PpuMI	RGGWCCY	1 cut(s)	400
Psp5II	RGGWCCY	1 cut(s)	400
PspN4I	GGNNCC	2 cut(s)	92, 402
PspPI	GGNCC	2 cut(s)	102, 400
PspPPI	RGGWCCY	1 cut(s)	400
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
RseI	CAYNNNNRTG	3 cut(s)	82, 216, 351
SaqAI	TTAA	1 cut(s)	314
SatI	GCNGC	2 cut(s)	89, 542
Sau3AI	GATC	3 cut(s)	20, 196, 387
Sau96I	GGNCC	2 cut(s)	102, 400
ScaI	AGTACT	1 cut(s)	224
SduI	GDGCHC	1 cut(s)	213
SetI	ASST	6 cut(s)	54, 135, 186, 210, 260, 297
SfaNI	GCATC	1 cut(s)	468
SinI	GGWCC	2 cut(s)	102, 400
SmiMI	CAYNNNNRTG	3 cut(s)	82, 216, 351
Sse9I	AATT	6 cut(s)	151, 310, 317, 361, 411, 536
SsiI	CCGC	4 cut(s)	64, 88, 94, 541
StyI	CCWWGG	2 cut(s)	366, 502
TaaI	ACNGT	2 cut(s)	43, 84
TaqI	TCGA	1 cut(s)	127
TasI	AATT	6 cut(s)	151, 310, 317, 361, 411, 536
TatI	WGTACW	1 cut(s)	222
TauI	GCSGC	2 cut(s)	91, 544
Tru1I	TTAA	1 cut(s)	314
Tru9I	TTAA	1 cut(s)	314
TscAI	CASTG	5 cut(s)	89, 104, 336, 390, 526
TspDTI	ATGAA	6 cut(s)	151, 240, 305, 341, 372, 411
TspGWI	ACGGA	1 cut(s)	490
TspRI	CASTG	5 cut(s)	89, 104, 336, 390, 526
Van91I	CCANNNNNTGG	1 cut(s)	331
VneI	GTGCAC	1 cut(s)	209
VpaK11BI	GGWCC	2 cut(s)	102, 400
XapI	RAATTY	3 cut(s)	310, 361, 411
ZrmI	AGTACT	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.