Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004138.1

Orthogroup ID

OG0001128

Physical Location & Seq

Genomic Coordinates Forward (+)

14039 .. 16225

Gene Structure 2187 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004138.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

atgtcatggcactggatctttagttcgcggagggctgggggaccctgtcctttgttcacagaagaggaaaagctgatgctgcataggcaaaaacctgatatggcttctgccacctctagtaaatggttgccccttcacactcttgccgtatcaggagaatattacattatgcatgctttatcaaaacatgaagctgatattaatgctgcggataaggatgattggactgttcttgacaaggcaattatcggtaaaaaccaggccattacagactatcttctcagagattcggctaatccatttgttcgtgataaagggatcattcaggtcgattgggcgtcgtatgaagcctcttcgtctcttgacatacttgtcgagattggagagcgcgatggtgaaatcgaactccgctttgcactcggcgaaccccaggccgatgaaggcgtgcttgccggtgccatcctcgatcctgaggatgaagtagcgcgaagattcgagcaatgtcttgacggaggtcgctggaatttggatcctccagtcagatctcgcaccggtccttgcacgaccttttccgctctcggcgagcttctcgtcgctgctggctccatcactgactttgatgagtatcgctcggtgagtttatcttccccggttgttttgattcgtgctgcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Ank_2 Ank_4 Ank_5 RRM_1

Protein Analysis

224

Amino Acids

24.78

Weight (kDa)

4.73

Isoelectric Point (pI)

51.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66055 AT5G66055
fragaria_vesca	FvH4_1g10990 FvH4_1g10990
malus_domestica	MD15G1236900.v1.1
prunus_persica	Prupe.7G175600_v2.0.a1
pyrus_communis	pycom15g21070
rosa_chinensis	RchiOBHm_Chr1g0316921 RchiOBHm_Chr1g0316981 RchiOBHm_Chr2g0098251 RchiOBHm_Chr2g0145411 RchiOBHm_Chr4g0390291 RchiOBHm_Chr5g0073551
rosa_laevigata	RLG00000001656 RLG00000016779 RLG00000027817 RLG00000030637 RLG00000032089
rosa_multiflora	Rmu_co8173478.1_g000001 Rmu_sc0000104.1_g000031 Rmu_sc0000712.1_g000024 Rmu_sc0001298.1_g000058 Rmu_sc0002048.1_g000015 Rmu_sc0002398.1_g000019 Rmu_sc0004138.1_g000005 Rmu_sc0007472.1_g000006 Rmu_sc0009922.1_g000006
rosa_roxburghii	Rroxscaffold_2G00094620 Rroxscaffold_2G00144120
rosa_rugosa	Rorug02G0071600 Rorug02G0547800 Rorug04G0008500 Rorug04G0008600 Rorug04G0008600 Rorug04G0208000 Rorug05G0455100.1
rosa_samantha	Rh1AG024600 Rh1AG024700 Rh1CG022000 Rh1CG022900 Rh1DG021700 Rh2AG118600 Rh2BG121700 Rh2BG300700 Rh2BG456300 Rh2CG123300 Rh2CG279400 Rh2DG123300 Rh2DG466200 Rh4AG245100 Rh4BG023700 Rh4BG025500 Rh4BG250300 Rh4DG100600 Rh5DG257900 Rh6AG184700
rosa_wichuraiana	Rw1G001670 Rw2G009310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	371
AccB1I	GGYRCC	1 cut(s)	455
AccBSI	CCGCTC	1 cut(s)	575
AccII	CGCG	3 cut(s)	28, 390, 487
AciI	CCGC	4 cut(s)	28, 209, 409, 573
AclWI	GGATC	5 cut(s)	23, 326, 461, 524, 537
AcsI	RAATTY	1 cut(s)	523
AcyI	GRCGYC	1 cut(s)	338
AgeI	ACCGGT	1 cut(s)	551
AjnI	CCWGG	2 cut(s)	258, 429
AloI	GAACNNNNNNTCC	2 cut(s)	7, 39
AluBI	AGCT	3 cut(s)	73, 194, 586
AluI	AGCT	3 cut(s)	73, 194, 586
Alw26I	GTCTC	1 cut(s)	363
AlwI	GGATC	5 cut(s)	23, 326, 461, 524, 537
AoxI	GGCC	2 cut(s)	261, 432
ApeKI	GCWGC	4 cut(s)	79, 206, 596, 668
ApoI	RAATTY	1 cut(s)	523
AseI	ATTAAT	1 cut(s)	201
AsiGI	ACCGGT	1 cut(s)	551
AspLEI	GCGC	2 cut(s)	390, 487
AspS9I	GGNCC	2 cut(s)	41, 554
AsuC2I	CCSGG	1 cut(s)	650
AsuHPI	GGTGA	2 cut(s)	407, 646
AvaII	GGWCC	2 cut(s)	41, 554
AxyI	CCTNAGG	1 cut(s)	471
BamHI	GGATCC	1 cut(s)	529
BanI	GGYRCC	1 cut(s)	455
BbvI	GCAGC	4 cut(s)	66, 193, 583, 655
BccI	CCATC	3 cut(s)	386, 467, 614
BceAI	ACGGC	1 cut(s)	131
BciT130I	CCWGG	2 cut(s)	260, 431
BcnI	CCSGG	1 cut(s)	650
BcoDI	GTCTC	1 cut(s)	363
BfaI	CTAG	1 cut(s)	117
BglII	AGATCT	1 cut(s)	542
BisI	GCNGC	4 cut(s)	80, 207, 597, 669
BlsI	GCNGC	4 cut(s)	81, 208, 598, 670
Bme1390I	CCNGG	3 cut(s)	260, 431, 650
Bme18I	GGWCC	2 cut(s)	41, 554
BmgT120I	GGNCC	2 cut(s)	41, 554
BmiI	GGNNCC	5 cut(s)	42, 43, 457, 531, 604
BmrFI	CCNGG	3 cut(s)	260, 431, 650
BmsI	GCATC	1 cut(s)	66
BoxI	GACNNNNGTC	1 cut(s)	513
BplI	GAGNNNNNCTC	2 cut(s)	614, 646
BpmI	CTGGAG	1 cut(s)	519
BpuMI	CCSGG	1 cut(s)	650
BsaBI	GATNNNNATC	1 cut(s)	624
BsaHI	GRCGYC	1 cut(s)	338
BsaJI	CCNNGG	2 cut(s)	429, 648
BsaWI	WCCGGW	1 cut(s)	551
Bse118I	RCCGGY	2 cut(s)	452, 551
Bse1I	ACTGG	2 cut(s)	17, 536
Bse21I	CCTNAGG	1 cut(s)	471
Bse3DI	GCAATG	1 cut(s)	506
Bse8I	GATNNNNATC	1 cut(s)	624
BseBI	CCWGG	2 cut(s)	260, 431
BseDI	CCNNGG	2 cut(s)	429, 648
BseGI	GGATG	3 cut(s)	223, 459, 481
BseJI	GATNNNNATC	1 cut(s)	624
BseMI	GCAATG	1 cut(s)	506
BseMII	CTCAG	2 cut(s)	295, 462
BseNI	ACTGG	2 cut(s)	17, 536
BseXI	GCAGC	4 cut(s)	66, 193, 583, 655
BseYI	CCCAGC	1 cut(s)	35
Bsh1236I	CGCG	3 cut(s)	28, 390, 487
BshFI	GGCC	2 cut(s)	263, 434
BshNI	GGYRCC	1 cut(s)	455
BshTI	ACCGGT	1 cut(s)	551
BsiSI	CCGG	3 cut(s)	453, 552, 650
BslFI	GGGAC	1 cut(s)	54
BsmAI	GTCTC	1 cut(s)	363
BsmBI	CGTCTC	1 cut(s)	363
BsmFI	GGGAC	1 cut(s)	54
BsnI	GGCC	2 cut(s)	263, 434
Bsp143I	GATC	5 cut(s)	15, 318, 466, 529, 542
BspACI	CCGC	4 cut(s)	28, 209, 409, 573
BspANI	GGCC	2 cut(s)	263, 434
BspCNI	CTCAG	2 cut(s)	294, 463
BspFNI	CGCG	3 cut(s)	28, 390, 487
BspLI	GGNNCC	5 cut(s)	42, 43, 457, 531, 604
BspPI	GGATC	5 cut(s)	23, 326, 461, 524, 537
BspT107I	GGYRCC	1 cut(s)	455
BsrBI	CCGCTC	1 cut(s)	575
BsrDI	GCAATG	1 cut(s)	506
BsrFI	RCCGGY	2 cut(s)	452, 551
BsrI	ACTGG	2 cut(s)	17, 536
BssAI	RCCGGY	2 cut(s)	452, 551
BssECI	CCNNGG	2 cut(s)	429, 648
BssMI	GATC	5 cut(s)	15, 318, 466, 529, 542
BssNI	GRCGYC	1 cut(s)	338
Bst2UI	CCWGG	2 cut(s)	260, 431
Bst4CI	ACNGT	1 cut(s)	229
Bst6I	CTCTTC	2 cut(s)	57, 358
BstACI	GRCGYC	1 cut(s)	338
BstC8I	GCNNGC	5 cut(s)	174, 446, 450, 584, 601
BstDEI	CTNAG	3 cut(s)	281, 471, 672
BstF5I	GGATG	3 cut(s)	223, 459, 481
BstFNI	CGCG	3 cut(s)	28, 390, 487
BstHHI	GCGC	2 cut(s)	390, 487
BstKTI	GATC	5 cut(s)	18, 321, 469, 532, 545
BstMAI	GTCTC	1 cut(s)	363
BstMBI	GATC	5 cut(s)	15, 318, 466, 529, 542
BstMWI	GCNNNNNNNGC	2 cut(s)	79, 85
BstNI	CCWGG	2 cut(s)	260, 431
BstNSI	RCATGY	1 cut(s)	176
BstPAI	GACNNNNGTC	1 cut(s)	513
BstSCI	CCNGG	3 cut(s)	258, 429, 648
BstUI	CGCG	3 cut(s)	28, 390, 487
BstV1I	GCAGC	4 cut(s)	66, 193, 583, 655
BstX2I	RGATCY	3 cut(s)	15, 529, 542
BstYI	RGATCY	3 cut(s)	15, 529, 542
Bsu36I	CCTNAGG	1 cut(s)	471
BsuRI	GGCC	2 cut(s)	263, 434
BtgZI	GCGATG	1 cut(s)	405
BtsCI	GGATG	3 cut(s)	223, 459, 481
BtsIMutI	CAGTG	2 cut(s)	10, 609
Cac8I	GCNNGC	5 cut(s)	174, 446, 450, 584, 601
CfoI	GCGC	2 cut(s)	390, 487
Cfr10I	RCCGGY	2 cut(s)	452, 551
Cfr13I	GGNCC	2 cut(s)	41, 554
CseI	GACGC	1 cut(s)	327
CspAI	ACCGGT	1 cut(s)	551
CviAII	CATG	3 cut(s)	6, 173, 188
DdeI	CTNAG	3 cut(s)	281, 471, 672
DpnI	GATC	5 cut(s)	17, 320, 468, 531, 544
DpnII	GATC	5 cut(s)	15, 318, 466, 529, 542
DrdI	GACNNNNNNGTC	1 cut(s)	371
DseDI	GACNNNNNNGTC	1 cut(s)	371
Eam1104I	CTCTTC	2 cut(s)	57, 358
EarI	CTCTTC	2 cut(s)	57, 358
Eco47I	GGWCC	2 cut(s)	41, 554
Eco81I	CCTNAGG	1 cut(s)	471
EcoO109I	RGGNCCY	1 cut(s)	41
EcoRII	CCWGG	2 cut(s)	258, 429
EcoT22I	ATGCAT	1 cut(s)	174
Esp3I	CGTCTC	1 cut(s)	363
FaeI	CATG	3 cut(s)	9, 176, 191
FaiI	YATR	8 cut(s)	7, 84, 101, 170, 174, 189, 345, 368
FalI	AAGNNNNNCTT	2 cut(s)	432, 464
FaqI	GGGAC	1 cut(s)	54
FatI	CATG	3 cut(s)	5, 172, 187
Fnu4HI	GCNGC	4 cut(s)	80, 207, 597, 669
FokI	GGATG	3 cut(s)	230, 446, 488
Fsp4HI	GCNGC	4 cut(s)	80, 207, 597, 669
FspBI	CTAG	1 cut(s)	117
GlaI	GCGC	2 cut(s)	389, 486
GluI	GCNGC	4 cut(s)	80, 207, 597, 669
GsaI	CCCAGC	1 cut(s)	39
GsuI	CTGGAG	1 cut(s)	519
HaeIII	GGCC	2 cut(s)	263, 434
HapII	CCGG	3 cut(s)	453, 552, 650
HgaI	GACGC	1 cut(s)	327
HhaI	GCGC	2 cut(s)	390, 487
Hin1I	GRCGYC	1 cut(s)	338
Hin1II	CATG	3 cut(s)	9, 176, 191
Hin6I	GCGC	2 cut(s)	388, 485
HinP1I	GCGC	2 cut(s)	388, 485
HinfI	GANTC	3 cut(s)	287, 492, 661
HpaII	CCGG	3 cut(s)	453, 552, 650
HphI	GGTGA	2 cut(s)	407, 646
Hpy166II	GTNNAC	1 cut(s)	57
Hpy188I	TCNGA	2 cut(s)	284, 542
Hpy188III	TCNNGA	7 cut(s)	153, 233, 308, 362, 376, 470, 506
Hpy8I	GTNNAC	1 cut(s)	57
Hpy99I	CGWCG	2 cut(s)	343, 596
HpyAV	CCTTC	2 cut(s)	143, 434
HpyCH4III	ACNGT	1 cut(s)	229
HpyCH4V	TGCA	4 cut(s)	82, 172, 416, 561
HpyF10VI	GCNNNNNNNGC	2 cut(s)	79, 85
HpyF3I	CTNAG	3 cut(s)	281, 471, 672
Hsp92I	GRCGYC	1 cut(s)	338
Hsp92II	CATG	3 cut(s)	9, 176, 191
HspAI	GCGC	2 cut(s)	388, 485
KflI	GGGWCCC	1 cut(s)	41
Kzo9I	GATC	5 cut(s)	15, 318, 466, 529, 542
LmnI	GCTCC	1 cut(s)	608
Lsp1109I	GCAGC	4 cut(s)	66, 193, 583, 655
LweI	GCATC	1 cut(s)	66
MaeI	CTAG	1 cut(s)	117
MalI	GATC	5 cut(s)	17, 320, 468, 531, 544
MbiI	CCGCTC	1 cut(s)	575
MboI	GATC	5 cut(s)	15, 318, 466, 529, 542
MboII	GAAGA	5 cut(s)	74, 269, 345, 501, 636
MflI	RGATCY	3 cut(s)	15, 529, 542
MluCI	AATT	2 cut(s)	243, 523
MnlI	CCTC	8 cut(s)	24, 58, 124, 361, 466, 473, 506, 543
Mph1103I	ATGCAT	1 cut(s)	174
MseI	TTAA	1 cut(s)	201
MspI	CCGG	3 cut(s)	453, 552, 650
MspR9I	CCNGG	3 cut(s)	260, 431, 650
MvaI	CCWGG	2 cut(s)	260, 431
MvnI	CGCG	3 cut(s)	28, 390, 487
MwoI	GCNNNNNNNGC	2 cut(s)	79, 85
NciI	CCSGG	1 cut(s)	650
NdeII	GATC	5 cut(s)	15, 318, 466, 529, 542
NlaIII	CATG	3 cut(s)	9, 176, 191
NlaIV	GGNNCC	5 cut(s)	42, 43, 457, 531, 604
NmeAIII	GCCGAG	2 cut(s)	399, 558
NsiI	ATGCAT	1 cut(s)	174
NspI	RCATGY	1 cut(s)	176
PaeI	GCATGC	1 cut(s)	176
PfeI	GAWTC	3 cut(s)	287, 492, 661
PflFI	GACNNNGTC	1 cut(s)	45
PinAI	ACCGGT	1 cut(s)	551
PkrI	GCNGC	4 cut(s)	81, 208, 598, 670
PpuMI	RGGWCCY	1 cut(s)	41
PshAI	GACNNNNGTC	1 cut(s)	513
PshBI	ATTAAT	1 cut(s)	201
Psp5II	RGGWCCY	1 cut(s)	41
Psp6I	CCWGG	2 cut(s)	258, 429
PspFI	CCCAGC	1 cut(s)	35
PspGI	CCWGG	2 cut(s)	258, 429
PspN4I	GGNNCC	5 cut(s)	42, 43, 457, 531, 604
PspPI	GGNCC	2 cut(s)	41, 554
PspPPI	RGGWCCY	1 cut(s)	41
PsuI	RGATCY	3 cut(s)	15, 529, 542
PsyI	GACNNNGTC	1 cut(s)	45
SaqAI	TTAA	1 cut(s)	201
SatI	GCNGC	4 cut(s)	80, 207, 597, 669
Sau3AI	GATC	5 cut(s)	15, 318, 466, 529, 542
Sau96I	GGNCC	2 cut(s)	41, 554
ScrFI	CCNGG	3 cut(s)	260, 431, 650
SetI	ASST	8 cut(s)	75, 97, 116, 196, 330, 517, 569, 588
SfaNI	GCATC	1 cut(s)	66
SinI	GGWCC	2 cut(s)	41, 554
SphI	GCATGC	1 cut(s)	176
Sse9I	AATT	2 cut(s)	243, 523
SsiI	CCGC	4 cut(s)	28, 209, 409, 573
SspI	AATATT	1 cut(s)	161
SspMI	CTAG	1 cut(s)	117
StyD4I	CCNGG	3 cut(s)	258, 429, 648
TaaI	ACNGT	1 cut(s)	229
TaqI	TCGA	5 cut(s)	330, 375, 402, 465, 495
TasI	AATT	2 cut(s)	243, 523
TfiI	GAWTC	3 cut(s)	287, 492, 661
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TscAI	CASTG	2 cut(s)	17, 616
TseI	GCWGC	4 cut(s)	79, 206, 596, 668
TspDTI	ATGAA	4 cut(s)	204, 360, 453, 492
TspGWI	ACGGA	1 cut(s)	525
TspRI	CASTG	2 cut(s)	17, 616
Tth111I	GACNNNGTC	1 cut(s)	45
VpaK11BI	GGWCC	2 cut(s)	41, 554
VspI	ATTAAT	1 cut(s)	201
XapI	RAATTY	1 cut(s)	523
XceI	RCATGY	1 cut(s)	176
XspI	CTAG	1 cut(s)	117
Zsp2I	ATGCAT	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.