Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001128

Physical Location & Seq

Genomic Coordinates Reverse (-)

15281571 .. 15282232

Gene Structure 662 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG100600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGAACGCTTTATAGAAGAGGCCCTTAAAAGGCTGAAAAAGAAAGAGGATGTGGAGGCAAACAATCGAAAGGTGAAAGTGTATGGTAGGAATTATACATTCATTGAGACCAGATGGAAGAAGCTCAGAGTTGGTGATCTTGTCAAGGTGCACAAGGATGAGTACTTTCTTGCTGATCTGCTTTTGCTTTCATCAAGCTATGAGGATGGCATTTGCTATGTGGAAACTATGAACCTTGATGGAGAAACAAATTTAAAATTGAACCATGCACTGGAGGCGACATCCCATCTTCATGATGAAAATTCCTTGGAAAGATTTAGGGCAGTGATCAAGTGTGAGGACGCAAATAAAATTCTATATTCATTTGTTGGGACTTTGTTCTATAAAAGCAGAGAACACCCACTTTCCTTGCAACAGATGCTGAAAAATACAGAATATGTCCATGGATTTGTTGTTTTCACTGGGCATGACACAGAAGTGCGGCAAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004012 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006900 GO:0006996 GO:0008150 GO:0009987 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031984 GO:0033036 GO:0034204 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045332 GO:0048193 GO:0048194 GO:0051179 GO:0051234 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0071944 GO:0097035 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase E1-E2_ATPase PhoLip_ATPase_C PhoLip_ATPase_N

Protein Analysis

163

Amino Acids

19.18

Weight (kDa)

6.66

Isoelectric Point (pI)

32.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66055 AT5G66055
fragaria_vesca	FvH4_1g10990 FvH4_1g10990
malus_domestica	MD15G1236900.v1.1
prunus_persica	Prupe.7G175600_v2.0.a1
pyrus_communis	pycom15g21070
rosa_chinensis	RchiOBHm_Chr1g0316921 RchiOBHm_Chr1g0316981 RchiOBHm_Chr2g0098251 RchiOBHm_Chr2g0145411 RchiOBHm_Chr4g0390291 RchiOBHm_Chr5g0073551
rosa_laevigata	RLG00000001656 RLG00000016779 RLG00000027817 RLG00000030637 RLG00000032089
rosa_multiflora	Rmu_co8173478.1_g000001 Rmu_sc0000104.1_g000031 Rmu_sc0000712.1_g000024 Rmu_sc0001298.1_g000058 Rmu_sc0002048.1_g000015 Rmu_sc0002398.1_g000019 Rmu_sc0004138.1_g000005 Rmu_sc0007472.1_g000006 Rmu_sc0009922.1_g000006
rosa_roxburghii	Rroxscaffold_2G00094620 Rroxscaffold_2G00144120
rosa_rugosa	Rorug02G0071600 Rorug02G0547800 Rorug04G0008500 Rorug04G0008600 Rorug04G0008600 Rorug04G0208000 Rorug05G0455100.1
rosa_samantha	Rh1AG024600 Rh1AG024700 Rh1CG022000 Rh1CG022900 Rh1DG021700 Rh2AG118600 Rh2BG121700 Rh2BG300700 Rh2BG456300 Rh2CG123300 Rh2CG279400 Rh2DG123300 Rh2DG466200 Rh4AG245100 Rh4BG023700 Rh4BG025500 Rh4BG250300 Rh4DG100600 Rh5DG257900 Rh6AG184700
rosa_wichuraiana	Rw1G001670 Rw2G009310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	271
AciI	CCGC	1 cut(s)	481
AcsI	RAATTY	3 cut(s)	250, 301, 351
AfaI	GTAC	1 cut(s)	164
AfiI	CCNNNNNNNGG	2 cut(s)	30, 271
AgsI	TTSAA	1 cut(s)	262
AleI	CACNNNNGTG	1 cut(s)	476
AluBI	AGCT	2 cut(s)	124, 198
AluI	AGCT	2 cut(s)	124, 198
Alw21I	GWGCWC	1 cut(s)	153
Alw26I	GTCTC	1 cut(s)	101
Alw44I	GTGCAC	1 cut(s)	149
AlwNI	CAGNNNCTG	1 cut(s)	421
AoxI	GGCC	1 cut(s)	21
ApaLI	GTGCAC	1 cut(s)	149
ApoI	RAATTY	3 cut(s)	250, 301, 351
AspS9I	GGNCC	1 cut(s)	22
AsuHPI	GGTGA	2 cut(s)	85, 146
BaeGI	GKGCMC	1 cut(s)	153
Bbv12I	GWGCWC	1 cut(s)	153
BccI	CCATC	4 cut(s)	108, 200, 233, 294
BclI	TGATCA	1 cut(s)	327
BcoDI	GTCTC	1 cut(s)	101
BisI	GCNGC	1 cut(s)	482
BlsI	GCNGC	1 cut(s)	483
BmcAI	AGTACT	1 cut(s)	164
BmgT120I	GGNCC	1 cut(s)	22
BmrI	ACTGGG	1 cut(s)	471
BmsI	GCATC	1 cut(s)	408
BmuI	ACTGGG	1 cut(s)	471
BpmI	CTGGAG	1 cut(s)	293
BsaI	GGTCTC	1 cut(s)	101
BsaJI	CCNNGG	2 cut(s)	306, 442
Bsc4I	CCNNNNNNNGG	2 cut(s)	30, 271
Bse1I	ACTGG	2 cut(s)	276, 466
BseDI	CCNNGG	2 cut(s)	306, 442
BseGI	GGATG	4 cut(s)	55, 163, 211, 281
BseLI	CCNNNNNNNGG	2 cut(s)	30, 271
BseMII	CTCAG	1 cut(s)	139
BseNI	ACTGG	2 cut(s)	276, 466
BseSI	GKGCMC	1 cut(s)	153
BshFI	GGCC	1 cut(s)	23
BsiHKAI	GWGCWC	1 cut(s)	153
BslFI	GGGAC	1 cut(s)	385
BslI	CCNNNNNNNGG	2 cut(s)	30, 271
BsmAI	GTCTC	1 cut(s)	101
BsmFI	GGGAC	1 cut(s)	385
BsnI	GGCC	1 cut(s)	23
Bso31I	GGTCTC	1 cut(s)	101
Bsp1286I	GDGCHC	1 cut(s)	153
Bsp143I	GATC	3 cut(s)	136, 175, 327
Bsp19I	CCATGG	1 cut(s)	442
BspACI	CCGC	1 cut(s)	481
BspANI	GGCC	1 cut(s)	23
BspCNI	CTCAG	1 cut(s)	138
BspHI	TCATGA	1 cut(s)	292
BspTNI	GGTCTC	1 cut(s)	101
BsrI	ACTGG	2 cut(s)	276, 466
BssECI	CCNNGG	2 cut(s)	306, 442
BssMI	GATC	3 cut(s)	136, 175, 327
BssT1I	CCWWGG	2 cut(s)	306, 442
Bst6I	CTCTTC	1 cut(s)	12
BstAPI	GCANNNNNTGC	1 cut(s)	418
BstDEI	CTNAG	1 cut(s)	125
BstDSI	CCRYGG	1 cut(s)	442
BstF5I	GGATG	4 cut(s)	55, 163, 211, 281
BstKTI	GATC	3 cut(s)	139, 178, 330
BstMAI	GTCTC	1 cut(s)	101
BstMBI	GATC	3 cut(s)	136, 175, 327
BstMWI	GCNNNNNNNGC	2 cut(s)	275, 418
BstSLI	GKGCMC	1 cut(s)	153
BsuRI	GGCC	1 cut(s)	23
BtgI	CCRYGG	1 cut(s)	442
BtsCI	GGATG	4 cut(s)	55, 163, 211, 281
BtsI	GCAGTG	1 cut(s)	330
BtsIMutI	CAGTG	3 cut(s)	269, 330, 459
CaiI	CAGNNNCTG	1 cut(s)	421
CciI	TCATGA	1 cut(s)	292
Cfr13I	GGNCC	1 cut(s)	22
CseI	GACGC	1 cut(s)	350
Csp6I	GTAC	1 cut(s)	163
CspCI	CAANNNNNGTGG	2 cut(s)	390, 425
CviAII	CATG	4 cut(s)	266, 293, 443, 467
CviJI	RGCY	4 cut(s)	23, 34, 124, 198
CviKI_1	RGCY	4 cut(s)	23, 34, 124, 198
CviQI	GTAC	1 cut(s)	163
DdeI	CTNAG	1 cut(s)	125
DpnI	GATC	3 cut(s)	138, 177, 329
DpnII	GATC	3 cut(s)	136, 175, 327
DraI	TTTAAA	1 cut(s)	255
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
Eco130I	CCWWGG	2 cut(s)	306, 442
Eco31I	GGTCTC	1 cut(s)	101
EcoO109I	RGGNCCY	1 cut(s)	22
EcoT14I	CCWWGG	2 cut(s)	306, 442
ErhI	CCWWGG	2 cut(s)	306, 442
FaeI	CATG	4 cut(s)	269, 296, 446, 470
FalI	AAGNNNNNCTT	2 cut(s)	9, 41
FaqI	GGGAC	1 cut(s)	385
FatI	CATG	4 cut(s)	265, 292, 442, 466
FbaI	TGATCA	1 cut(s)	327
Fnu4HI	GCNGC	1 cut(s)	482
FokI	GGATG	4 cut(s)	62, 170, 218, 268
Fsp4HI	GCNGC	1 cut(s)	482
GluI	GCNGC	1 cut(s)	482
GsuI	CTGGAG	1 cut(s)	293
HaeIII	GGCC	1 cut(s)	23
HgaI	GACGC	1 cut(s)	350
Hin1II	CATG	4 cut(s)	269, 296, 446, 470
HphI	GGTGA	2 cut(s)	85, 146
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	1 cut(s)	128
Hpy188III	TCNNGA	1 cut(s)	293
Hpy8I	GTNNAC	1 cut(s)	151
HpyCH4V	TGCA	3 cut(s)	151, 269, 412
HpyF10VI	GCNNNNNNNGC	2 cut(s)	275, 418
HpyF3I	CTNAG	1 cut(s)	125
Hsp92II	CATG	4 cut(s)	269, 296, 446, 470
Ksp22I	TGATCA	1 cut(s)	327
Kzo9I	GATC	3 cut(s)	136, 175, 327
LpnPI	CCDG	3 cut(s)	124, 257, 447
LweI	GCATC	1 cut(s)	408
MalI	GATC	3 cut(s)	138, 177, 329
MboI	GATC	3 cut(s)	136, 175, 327
MboII	GAAGA	3 cut(s)	29, 130, 281
MhlI	GDGCHC	1 cut(s)	153
MluCI	AATT	5 cut(s)	91, 250, 257, 301, 351
MnlI	CCTC	6 cut(s)	13, 40, 49, 196, 268, 331
MseI	TTAA	2 cut(s)	27, 254
MslI	CAYNNNNRTG	3 cut(s)	156, 291, 476
MwoI	GCNNNNNNNGC	2 cut(s)	275, 418
NcoI	CCATGG	1 cut(s)	442
NdeII	GATC	3 cut(s)	136, 175, 327
NlaIII	CATG	4 cut(s)	269, 296, 446, 470
OliI	CACNNNNGTG	1 cut(s)	476
PagI	TCATGA	1 cut(s)	292
PflMI	CCANNNNNTGG	1 cut(s)	271
PkrI	GCNGC	1 cut(s)	483
PspPI	GGNCC	1 cut(s)	22
PstNI	CAGNNNCTG	1 cut(s)	421
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
RseI	CAYNNNNRTG	3 cut(s)	156, 291, 476
SaqAI	TTAA	2 cut(s)	27, 254
SatI	GCNGC	1 cut(s)	482
Sau3AI	GATC	3 cut(s)	136, 175, 327
Sau96I	GGNCC	1 cut(s)	22
ScaI	AGTACT	1 cut(s)	164
SduI	GDGCHC	1 cut(s)	153
SetI	ASST	5 cut(s)	75, 126, 150, 200, 237
SfaNI	GCATC	1 cut(s)	408
SmiMI	CAYNNNNRTG	3 cut(s)	156, 291, 476
Sse9I	AATT	5 cut(s)	91, 250, 257, 301, 351
SsiI	CCGC	1 cut(s)	481
StyI	CCWWGG	2 cut(s)	306, 442
TaqI	TCGA	1 cut(s)	67
TasI	AATT	5 cut(s)	91, 250, 257, 301, 351
TatI	WGTACW	1 cut(s)	162
TauI	GCSGC	1 cut(s)	484
Tru1I	TTAA	2 cut(s)	27, 254
Tru9I	TTAA	2 cut(s)	27, 254
TscAI	CASTG	3 cut(s)	276, 330, 466
TspDTI	ATGAA	6 cut(s)	91, 180, 245, 281, 312, 351
TspRI	CASTG	3 cut(s)	276, 330, 466
Van91I	CCANNNNNTGG	1 cut(s)	271
VneI	GTGCAC	1 cut(s)	149
XapI	RAATTY	3 cut(s)	250, 301, 351
ZrmI	AGTACT	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.