Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001128

Physical Location & Seq

Genomic Coordinates Forward (+)

18872485 .. 18878000

Gene Structure 5516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001656

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGTCGACCACGGCGGGATTTTGTACACTGCGACCTCGCGCACCACTAGCAGCTTCAGAATCCTCGTCGCCGCCGCCTCCGCGATCCATCTCCTTCGTCACTGTAAGTTCTACTTCATCACTCGTCGACCTTTTTCTATGGCGGAAGGCAAGCTCGATCTCCCCGACGATCTCCTCTCCTCCAAACCCTCTGATTAGTCCTAGACCTCCAAAGCTTTTTAAAGAAGAATGGTGCTATCCGGATCAAGAAGTTGATATTTCAGATCTAACAGTTTCAGACTGTTGGAAACGACTTCCTGACCATATTGAGGAGAAAAACTTGTGGATTTGTTGGGGTTTACTTGGTTTAAAGCTTACATCTTTCATTTTCCCCCAGTTCCCGCAACAGAAAAATGACTATGATTGTGGTCTCTTTGTACTCTTATTTATGGAACGCTTTATAGAAGAGACCCTTAAAAGGCTGAAAAAGAAAGAGGATGTGGAGGCAAACAATCGAAAGGTGATAATGTATGGTTGGAATTATACATTCATTGAGACCAGATGGAAGAAGCTCAAAGTTGGTGATCTTGTCAGGGTGCACAAGGATGAGTACTTTCTTGCTGATCTGCTTTTGCTTTCATCAAGCTATGAGGATGGCATTTGCTATGTGGAAACTATGAACCATGATGGAGAAACAAATTTAAAATTGAACCATGCACTGGAGGCGACATCCCATCTTCATGATGAAAATTCCTTGGAAAGATTTAGGGCAGTGATCAAGTGTGAGGACCCAAATAAAATTCTATATTCATTTGTTGGGACTTTGTTCTATAATGGCAAAGAACACCCACTTTCCTTGCAACAGATGCTGAAAAATACAGAATATGTCCATGAATTTGTTGTTTTCACTGGGCATGACACAGATCGAAAAGCCTCCGCGCTCAACAGCGATGCCTCCTCCTCTTTCAGCCATGAAGTCGAGCAAGATGCCACCTTGGATCGAACACACGACGTCGTTTACCTAGCGGGATGGAGTTGTTGCCTCTCAGAACTTCCAGCTTCGCCATTGTTCGCCGCGGCTGCTGCCGTTGTCATCGACGAAGGTCTCAAGGACGAGGAAGCTATCGATTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004012 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006900 GO:0006996 GO:0008150 GO:0009987 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031984 GO:0033036 GO:0034204 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045332 GO:0048193 GO:0048194 GO:0051179 GO:0051234 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0071944 GO:0097035 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase E1-E2_ATPase PhoLip_ATPase_C PhoLip_ATPase_N

Protein Analysis

371

Amino Acids

42.1

Weight (kDa)

5.17

Isoelectric Point (pI)

49.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C48	PF02902	124 - 164	4.4e-07	Ulp1 protease family, C-terminal catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66055 AT5G66055
fragaria_vesca	FvH4_1g10990 FvH4_1g10990
malus_domestica	MD15G1236900.v1.1
prunus_persica	Prupe.7G175600_v2.0.a1
pyrus_communis	pycom15g21070
rosa_chinensis	RchiOBHm_Chr1g0316921 RchiOBHm_Chr1g0316981 RchiOBHm_Chr2g0098251 RchiOBHm_Chr2g0145411 RchiOBHm_Chr4g0390291 RchiOBHm_Chr5g0073551
rosa_laevigata	RLG00000001656 RLG00000016779 RLG00000027817 RLG00000030637 RLG00000032089
rosa_multiflora	Rmu_co8173478.1_g000001 Rmu_sc0000104.1_g000031 Rmu_sc0000712.1_g000024 Rmu_sc0001298.1_g000058 Rmu_sc0002048.1_g000015 Rmu_sc0002398.1_g000019 Rmu_sc0004138.1_g000005 Rmu_sc0007472.1_g000006 Rmu_sc0009922.1_g000006
rosa_roxburghii	Rroxscaffold_2G00094620 Rroxscaffold_2G00144120
rosa_rugosa	Rorug02G0071600 Rorug02G0547800 Rorug04G0008500 Rorug04G0008600 Rorug04G0008600 Rorug04G0208000 Rorug05G0455100.1
rosa_samantha	Rh1AG024600 Rh1AG024700 Rh1CG022000 Rh1CG022900 Rh1DG021700 Rh2AG118600 Rh2BG121700 Rh2BG300700 Rh2BG456300 Rh2CG123300 Rh2CG279400 Rh2DG123300 Rh2DG466200 Rh4AG245100 Rh4BG023700 Rh4BG025500 Rh4BG250300 Rh4DG100600 Rh5DG257900 Rh6AG184700
rosa_wichuraiana	Rw1G001670 Rw2G009310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	993
AccB7I	CCANNNNNTGG	1 cut(s)	697
AccI	GTMKAC	2 cut(s)	5, 126
AccII	CGCG	4 cut(s)	39, 82, 917, 1055
AccIII	TCCGGA	1 cut(s)	238
AclWI	GGATC	3 cut(s)	78, 249, 984
AcsI	RAATTY	4 cut(s)	676, 727, 777, 872
AcuI	CTGAAG	1 cut(s)	39
AcyI	GRCGYC	1 cut(s)	990
AfaI	GTAC	3 cut(s)	25, 417, 590
AfiI	CCNNNNNNNGG	3 cut(s)	307, 456, 697
AgsI	TTSAA	1 cut(s)	688
AluBI	AGCT	8 cut(s)	53, 153, 214, 352, 550, 624, 1037, 1100
AluI	AGCT	8 cut(s)	53, 153, 214, 352, 550, 624, 1037, 1100
Alw21I	GWGCWC	1 cut(s)	579
Alw26I	GTCTC	4 cut(s)	413, 440, 527, 1088
Alw44I	GTGCAC	1 cut(s)	575
AlwI	GGATC	3 cut(s)	78, 249, 984
AlwNI	CAGNNNCTG	1 cut(s)	847
Aor13HI	TCCGGA	1 cut(s)	238
ApaLI	GTGCAC	1 cut(s)	575
ApeKI	GCWGC	3 cut(s)	50, 1058, 1061
ApoI	RAATTY	4 cut(s)	676, 727, 777, 872
AspLEI	GCGC	2 cut(s)	41, 919
AspS9I	GGNCC	1 cut(s)	766
AsuHPI	GGTGA	2 cut(s)	511, 572
AvaII	GGWCC	1 cut(s)	766
BaeGI	GKGCMC	1 cut(s)	579
Bbv12I	GWGCWC	1 cut(s)	579
BbvI	GCAGC	3 cut(s)	62, 1045, 1048
BccI	CCATC	6 cut(s)	95, 534, 626, 659, 720, 1002
BceAI	ACGGC	2 cut(s)	27, 1049
BcgI	CGANNNNNNTGC	2 cut(s)	947, 981
BclI	TGATCA	1 cut(s)	753
BcoDI	GTCTC	4 cut(s)	413, 440, 527, 1088
BfaI	CTAG	3 cut(s)	47, 201, 1001
BglII	AGATCT	1 cut(s)	262
BisI	GCNGC	7 cut(s)	51, 71, 74, 1053, 1056, 1059, 1062
BlsI	GCNGC	7 cut(s)	52, 72, 75, 1054, 1057, 1060, 1063
BmcAI	AGTACT	1 cut(s)	590
Bme18I	GGWCC	1 cut(s)	766
BmgT120I	GGNCC	1 cut(s)	766
BmiI	GGNNCC	1 cut(s)	768
BmrI	ACTGGG	2 cut(s)	367, 897
BmsI	GCATC	3 cut(s)	834, 919, 955
BmuI	ACTGGG	2 cut(s)	367, 897
BoxI	GACNNNNGTC	1 cut(s)	1080
BpmI	CTGGAG	1 cut(s)	719
BpuEI	CTTGAG	1 cut(s)	1070
Bsa29I	ATCGAT	1 cut(s)	1104
BsaHI	GRCGYC	1 cut(s)	990
BsaI	GGTCTC	4 cut(s)	413, 440, 527, 1088
BsaJI	CCNNGG	4 cut(s)	9, 732, 972, 1053
BsaWI	WCCGGW	1 cut(s)	238
Bsc4I	CCNNNNNNNGG	3 cut(s)	307, 456, 697
Bse1I	ACTGG	3 cut(s)	373, 702, 892
BseAI	TCCGGA	1 cut(s)	238
BseCI	ATCGAT	1 cut(s)	1104
BseDI	CCNNGG	4 cut(s)	9, 732, 972, 1053
BseGI	GGATG	5 cut(s)	481, 589, 637, 707, 1013
BseLI	CCNNNNNNNGG	3 cut(s)	307, 456, 697
BseMII	CTCAG	1 cut(s)	1038
BseNI	ACTGG	3 cut(s)	373, 702, 892
BseRI	GAGGAG	5 cut(s)	163, 168, 323, 925, 928
BseSI	GKGCMC	1 cut(s)	579
BseXI	GCAGC	3 cut(s)	62, 1045, 1048
Bsh1236I	CGCG	4 cut(s)	39, 82, 917, 1055
BshVI	ATCGAT	1 cut(s)	1104
BsiHKAI	GWGCWC	1 cut(s)	579
BsiSI	CCGG	1 cut(s)	239
BslFI	GGGAC	1 cut(s)	811
BslI	CCNNNNNNNGG	3 cut(s)	307, 456, 697
BsmAI	GTCTC	4 cut(s)	413, 440, 527, 1088
BsmFI	GGGAC	1 cut(s)	811
Bso31I	GGTCTC	4 cut(s)	413, 440, 527, 1088
Bsp1286I	GDGCHC	1 cut(s)	579
Bsp13I	TCCGGA	1 cut(s)	238
Bsp1407I	TGTACA	1 cut(s)	23
BspCNI	CTCAG	1 cut(s)	1037
BspDI	ATCGAT	1 cut(s)	1104
BspEI	TCCGGA	1 cut(s)	238
BspFNI	CGCG	4 cut(s)	39, 82, 917, 1055
BspHI	TCATGA	1 cut(s)	718
BspLI	GGNNCC	1 cut(s)	768
BspPI	GGATC	3 cut(s)	78, 249, 984
BspTNI	GGTCTC	4 cut(s)	413, 440, 527, 1088
BsrGI	TGTACA	1 cut(s)	23
BsrI	ACTGG	3 cut(s)	373, 702, 892
BssECI	CCNNGG	4 cut(s)	9, 732, 972, 1053
BssNI	GRCGYC	1 cut(s)	990
BssT1I	CCWWGG	2 cut(s)	732, 972
Bst4CI	ACNGT	3 cut(s)	103, 271, 281
Bst6I	CTCTTC	1 cut(s)	438
BstACI	GRCGYC	1 cut(s)	990
BstAPI	GCANNNNNTGC	1 cut(s)	844
BstAUI	TGTACA	1 cut(s)	23
BstC8I	GCNNGC	1 cut(s)	151
BstDEI	CTNAG	1 cut(s)	1024
BstDSI	CCRYGG	2 cut(s)	9, 1053
BstF5I	GGATG	5 cut(s)	481, 589, 637, 707, 1013
BstFNI	CGCG	4 cut(s)	39, 82, 917, 1055
BstHHI	GCGC	2 cut(s)	41, 919
BstMAI	GTCTC	4 cut(s)	413, 440, 527, 1088
BstMWI	GCNNNNNNNGC	6 cut(s)	47, 79, 701, 844, 1058, 1061
BstPAI	GACNNNNGTC	1 cut(s)	1080
BstSLI	GKGCMC	1 cut(s)	579
BstUI	CGCG	4 cut(s)	39, 82, 917, 1055
BstV1I	GCAGC	3 cut(s)	62, 1045, 1048
BstX2I	RGATCY	1 cut(s)	262
BstYI	RGATCY	1 cut(s)	262
Bsu15I	ATCGAT	1 cut(s)	1104
BsuTUI	ATCGAT	1 cut(s)	1104
BtgI	CCRYGG	2 cut(s)	9, 1053
BtgZI	GCGATG	1 cut(s)	942
BtsCI	GGATG	5 cut(s)	481, 589, 637, 707, 1013
BtsI	GCAGTG	2 cut(s)	26, 756
BtsIMutI	CAGTG	5 cut(s)	26, 99, 695, 756, 885
Cac8I	GCNNGC	1 cut(s)	151
CaiI	CAGNNNCTG	1 cut(s)	847
CciI	TCATGA	1 cut(s)	718
CfoI	GCGC	2 cut(s)	41, 919
Cfr13I	GGNCC	1 cut(s)	766
Cfr42I	CCGCGG	1 cut(s)	1056
ClaI	ATCGAT	1 cut(s)	1104
Csp6I	GTAC	3 cut(s)	24, 416, 589
CspCI	CAANNNNNGTGG	2 cut(s)	816, 851
CviAII	CATG	6 cut(s)	662, 692, 719, 869, 893, 950
CviQI	GTAC	3 cut(s)	24, 416, 589
DdeI	CTNAG	1 cut(s)	1024
DraI	TTTAAA	3 cut(s)	220, 348, 681
Eam1104I	CTCTTC	1 cut(s)	438
EarI	CTCTTC	1 cut(s)	438
EciI	GGCGGA	1 cut(s)	157
Eco130I	CCWWGG	2 cut(s)	732, 972
Eco31I	GGTCTC	4 cut(s)	413, 440, 527, 1088
Eco47I	GGWCC	1 cut(s)	766
Eco57I	CTGAAG	1 cut(s)	39
EcoO109I	RGGNCCY	1 cut(s)	766
EcoT14I	CCWWGG	2 cut(s)	732, 972
ErhI	CCWWGG	2 cut(s)	732, 972
FaeI	CATG	6 cut(s)	665, 695, 722, 872, 896, 953
FalI	AAGNNNNNCTT	4 cut(s)	97, 129, 435, 467
FaqI	GGGAC	1 cut(s)	811
FatI	CATG	6 cut(s)	661, 691, 718, 868, 892, 949
FauI	CCCGC	3 cut(s)	7, 387, 997
FbaI	TGATCA	1 cut(s)	753
FblI	GTMKAC	2 cut(s)	5, 126
Fnu4HI	GCNGC	7 cut(s)	51, 71, 74, 1053, 1056, 1059, 1062
FokI	GGATG	5 cut(s)	488, 596, 644, 694, 1020
Fsp4HI	GCNGC	7 cut(s)	51, 71, 74, 1053, 1056, 1059, 1062
FspBI	CTAG	3 cut(s)	47, 201, 1001
GlaI	GCGC	2 cut(s)	40, 918
GluI	GCNGC	7 cut(s)	51, 71, 74, 1053, 1056, 1059, 1062
GsuI	CTGGAG	1 cut(s)	719
HapII	CCGG	1 cut(s)	239
HhaI	GCGC	2 cut(s)	41, 919
Hin1I	GRCGYC	1 cut(s)	990
Hin1II	CATG	6 cut(s)	665, 695, 722, 872, 896, 953
Hin6I	GCGC	2 cut(s)	39, 917
HinP1I	GCGC	2 cut(s)	39, 917
HincII	GTYRAC	2 cut(s)	6, 127
HindII	GTYRAC	2 cut(s)	6, 127
HindIII	AAGCTT	2 cut(s)	212, 350
HinfI	GANTC	1 cut(s)	59
HpaII	CCGG	1 cut(s)	239
HphI	GGTGA	2 cut(s)	511, 572
Hpy166II	GTNNAC	6 cut(s)	6, 26, 127, 338, 577, 997
Hpy188I	TCNGA	5 cut(s)	58, 192, 262, 277, 1027
Hpy188III	TCNNGA	4 cut(s)	239, 245, 296, 719
Hpy8I	GTNNAC	6 cut(s)	6, 26, 127, 338, 577, 997
Hpy99I	CGWCG	6 cut(s)	70, 128, 169, 992, 995, 1079
HpyAV	CCTTC	3 cut(s)	103, 139, 1073
HpyCH4III	ACNGT	3 cut(s)	103, 271, 281
HpyCH4IV	ACGT	1 cut(s)	990
HpyCH4V	TGCA	3 cut(s)	577, 695, 838
HpyF10VI	GCNNNNNNNGC	6 cut(s)	47, 79, 701, 844, 1058, 1061
HpyF3I	CTNAG	1 cut(s)	1024
HpySE526I	ACGT	1 cut(s)	990
Hsp92I	GRCGYC	1 cut(s)	990
Hsp92II	CATG	6 cut(s)	665, 695, 722, 872, 896, 953
HspAI	GCGC	2 cut(s)	39, 917
Kpn2I	TCCGGA	1 cut(s)	238
Ksp22I	TGATCA	1 cut(s)	753
KspI	CCGCGG	1 cut(s)	1056
LpnPI	CCDG	8 cut(s)	252, 309, 386, 550, 556, 683, 873, 1047
Lsp1109I	GCAGC	3 cut(s)	62, 1045, 1048
LweI	GCATC	3 cut(s)	834, 919, 955
MaeI	CTAG	3 cut(s)	47, 201, 1001
MaeII	ACGT	1 cut(s)	990
MaeIII	GTNAC	1 cut(s)	97
MboII	GAAGA	4 cut(s)	236, 455, 556, 707
MflI	RGATCY	1 cut(s)	262
MhlI	GDGCHC	1 cut(s)	579
MluCI	AATT	6 cut(s)	517, 676, 683, 727, 777, 872
MmeI	TCCRAC	2 cut(s)	263, 494
MroI	TCCGGA	1 cut(s)	238
MseI	TTAA	4 cut(s)	219, 347, 453, 680
MslI	CAYNNNNRTG	2 cut(s)	582, 717
MspA1I	CMGCKG	1 cut(s)	1055
MspI	CCGG	1 cut(s)	239
MvnI	CGCG	4 cut(s)	39, 82, 917, 1055
MwoI	GCNNNNNNNGC	6 cut(s)	47, 79, 701, 844, 1058, 1061
NlaIII	CATG	6 cut(s)	665, 695, 722, 872, 896, 953
NlaIV	GGNNCC	1 cut(s)	768
NmuCI	GTSAC	1 cut(s)	97
PagI	TCATGA	1 cut(s)	718
PcsI	WCGNNNNNNNCGW	1 cut(s)	161
PfeI	GAWTC	1 cut(s)	59
PflMI	CCANNNNNTGG	1 cut(s)	697
PkrI	GCNGC	7 cut(s)	52, 72, 75, 1054, 1057, 1060, 1063
PpuMI	RGGWCCY	1 cut(s)	766
PshAI	GACNNNNGTC	1 cut(s)	1080
Psp5II	RGGWCCY	1 cut(s)	766
PspN4I	GGNNCC	1 cut(s)	768
PspPI	GGNCC	1 cut(s)	766
PspPPI	RGGWCCY	1 cut(s)	766
PstNI	CAGNNNCTG	1 cut(s)	847
PsuI	RGATCY	1 cut(s)	262
RsaI	GTAC	3 cut(s)	25, 417, 590
RsaNI	GTAC	3 cut(s)	24, 416, 589
RseI	CAYNNNNRTG	2 cut(s)	582, 717
SacII	CCGCGG	1 cut(s)	1056
SalI	GTCGAC	2 cut(s)	4, 125
SaqAI	TTAA	4 cut(s)	219, 347, 453, 680
SatI	GCNGC	7 cut(s)	51, 71, 74, 1053, 1056, 1059, 1062
Sau96I	GGNCC	1 cut(s)	766
ScaI	AGTACT	1 cut(s)	590
SduI	GDGCHC	1 cut(s)	579
SfaNI	GCATC	3 cut(s)	834, 919, 955
Sfr303I	CCGCGG	1 cut(s)	1056
SgrBI	CCGCGG	1 cut(s)	1056
SinI	GGWCC	1 cut(s)	766
SmiMI	CAYNNNNRTG	2 cut(s)	582, 717
SmlI	CTYRAG	1 cut(s)	1085
SmoI	CTYRAG	1 cut(s)	1085
Sse9I	AATT	6 cut(s)	517, 676, 683, 727, 777, 872
SspMI	CTAG	3 cut(s)	47, 201, 1001
StyI	CCWWGG	2 cut(s)	732, 972
TaaI	ACNGT	3 cut(s)	103, 271, 281
TaiI	ACGT	1 cut(s)	993
TaqI	TCGA	9 cut(s)	5, 126, 155, 493, 904, 957, 979, 1074, 1104
TasI	AATT	6 cut(s)	517, 676, 683, 727, 777, 872
TatI	WGTACW	3 cut(s)	23, 415, 588
TauI	GCSGC	4 cut(s)	73, 76, 1055, 1058
TfiI	GAWTC	1 cut(s)	59
Tru1I	TTAA	4 cut(s)	219, 347, 453, 680
Tru9I	TTAA	4 cut(s)	219, 347, 453, 680
TscAI	CASTG	5 cut(s)	33, 106, 702, 756, 892
TseFI	GTSAC	1 cut(s)	97
TseI	GCWGC	3 cut(s)	50, 1058, 1061
Tsp45I	GTSAC	1 cut(s)	97
TspRI	CASTG	5 cut(s)	33, 106, 702, 756, 892
Van91I	CCANNNNNTGG	1 cut(s)	697
VneI	GTGCAC	1 cut(s)	575
VpaK11BI	GGWCC	1 cut(s)	766
XapI	RAATTY	4 cut(s)	676, 727, 777, 872
XmiI	GTMKAC	2 cut(s)	5, 126
XspI	CTAG	3 cut(s)	47, 201, 1001
ZraI	GACGTC	1 cut(s)	991
ZrmI	AGTACT	1 cut(s)	590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.