Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002048.1

Orthogroup ID

OG0001128

Physical Location & Seq

Genomic Coordinates Reverse (-)

55128 .. 57272

Gene Structure 2145 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002048.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ctggtaatcaaatcgctccagatcattcaggtcgatcgggcgtcgtacgaagcctcttcgtctcttgacatacttgtcgagattagagagcgcgatggtgaaattgaacgccactttgccctcgacgaacccgaggccgatgaaggcgtgcttgccggtgccatcctcgatcctgaggatgaagtagcgcgacgattcgagcacgatcttgaagaaggtcgctggaatttggatcctccagtcggatctcgcaccggtccttgcacgaccttttccgctctcggagagcttctcgtcgctgctggctgcatcactgactttgatgagtaccgctcggatgtggaggcaaacaatcgaaaggtgaaagtgcatggtaggaattatgcattcattgagaccagatggaagaagctcagagttggtgatcttgtcaaggtgcacaaggatgagtactttcttgctgatctgcttttgctttcatcaagctatgaggatggcattttctatgtggaaactatgaaccttgatagagaaacaagtttaaaattgaaccatgcactggcggcgacatcccatcttcatgatgaaaattccttggaaagatttagggcagtgatcaagtgtgaggacccaaataaaattctatattcatctgttgggactttgttctataacggcagagaacacccactttccttgcaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004012 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006900 GO:0006996 GO:0008150 GO:0009987 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031984 GO:0033036 GO:0034204 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045332 GO:0048193 GO:0048194 GO:0051179 GO:0051234 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0071944 GO:0097035 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase E1-E2_ATPase PhoLip_ATPase_C PhoLip_ATPase_N

Protein Analysis

234

Amino Acids

26.57

Weight (kDa)

4.86

Isoelectric Point (pI)

40.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66055 AT5G66055
fragaria_vesca	FvH4_1g10990 FvH4_1g10990
malus_domestica	MD15G1236900.v1.1
prunus_persica	Prupe.7G175600_v2.0.a1
pyrus_communis	pycom15g21070
rosa_chinensis	RchiOBHm_Chr1g0316921 RchiOBHm_Chr1g0316981 RchiOBHm_Chr2g0098251 RchiOBHm_Chr2g0145411 RchiOBHm_Chr4g0390291 RchiOBHm_Chr5g0073551
rosa_laevigata	RLG00000001656 RLG00000016779 RLG00000027817 RLG00000030637 RLG00000032089
rosa_multiflora	Rmu_co8173478.1_g000001 Rmu_sc0000104.1_g000031 Rmu_sc0000712.1_g000024 Rmu_sc0001298.1_g000058 Rmu_sc0002048.1_g000015 Rmu_sc0002398.1_g000019 Rmu_sc0004138.1_g000005 Rmu_sc0007472.1_g000006 Rmu_sc0009922.1_g000006
rosa_roxburghii	Rroxscaffold_2G00094620 Rroxscaffold_2G00144120
rosa_rugosa	Rorug02G0071600 Rorug02G0547800 Rorug04G0008500 Rorug04G0008600 Rorug04G0008600 Rorug04G0208000 Rorug05G0455100.1
rosa_samantha	Rh1AG024600 Rh1AG024700 Rh1CG022000 Rh1CG022900 Rh1DG021700 Rh2AG118600 Rh2BG121700 Rh2BG300700 Rh2BG456300 Rh2CG123300 Rh2CG279400 Rh2DG123300 Rh2DG466200 Rh4AG245100 Rh4BG023700 Rh4BG025500 Rh4BG250300 Rh4DG100600 Rh5DG257900 Rh6AG184700
rosa_wichuraiana	Rw1G001670 Rw2G009310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	74
AccB1I	GGYRCC	1 cut(s)	158
AccB7I	CCANNNNNTGG	1 cut(s)	559
AccBSI	CCGCTC	2 cut(s)	278, 333
AccII	CGCG	2 cut(s)	93, 190
AciI	CCGC	3 cut(s)	276, 331, 563
AclWI	GGATC	4 cut(s)	164, 227, 240, 253
AcsI	RAATTY	3 cut(s)	226, 589, 639
AcyI	GRCGYC	1 cut(s)	41
AfaI	GTAC	3 cut(s)	47, 329, 452
AfiI	CCNNNNNNNGG	2 cut(s)	242, 559
AgeI	ACCGGT	1 cut(s)	254
AgsI	TTSAA	3 cut(s)	107, 212, 550
AluBI	AGCT	3 cut(s)	289, 412, 486
AluI	AGCT	3 cut(s)	289, 412, 486
Alw21I	GWGCWC	2 cut(s)	204, 441
Alw26I	GTCTC	2 cut(s)	66, 389
Alw44I	GTGCAC	1 cut(s)	437
AlwI	GGATC	4 cut(s)	164, 227, 240, 253
Ama87I	CYCGRG	1 cut(s)	131
AoxI	GGCC	1 cut(s)	135
ApaLI	GTGCAC	1 cut(s)	437
ApeKI	GCWGC	2 cut(s)	299, 306
ApoI	RAATTY	3 cut(s)	226, 589, 639
AsiGI	ACCGGT	1 cut(s)	254
AspLEI	GCGC	2 cut(s)	93, 190
AspS9I	GGNCC	2 cut(s)	257, 628
AsuHPI	GGTGA	3 cut(s)	110, 373, 434
AvaI	CYCGRG	1 cut(s)	131
AvaII	GGWCC	2 cut(s)	257, 628
AxyI	CCTNAGG	1 cut(s)	174
BaeGI	GKGCMC	1 cut(s)	441
BamHI	GGATCC	1 cut(s)	232
BanI	GGYRCC	1 cut(s)	158
Bbv12I	GWGCWC	2 cut(s)	204, 441
BbvI	GCAGC	2 cut(s)	286, 293
BccI	CCATC	5 cut(s)	89, 170, 396, 488, 582
BceAI	ACGGC	1 cut(s)	691
BclI	TGATCA	1 cut(s)	615
BcoDI	GTCTC	2 cut(s)	66, 389
BisI	GCNGC	3 cut(s)	300, 307, 564
BlsI	GCNGC	3 cut(s)	301, 308, 565
BmcAI	AGTACT	1 cut(s)	452
Bme18I	GGWCC	2 cut(s)	257, 628
BmeT110I	CYCGRG	1 cut(s)	131
BmgT120I	GGNCC	2 cut(s)	257, 628
BmiI	GGNNCC	3 cut(s)	160, 234, 630
BmsI	GCATC	1 cut(s)	318
BplI	GAGNNNNNCTC	4 cut(s)	276, 308, 317, 349
BpmI	CTGGAG	1 cut(s)	222
BsaHI	GRCGYC	1 cut(s)	41
BsaI	GGTCTC	1 cut(s)	389
BsaJI	CCNNGG	2 cut(s)	132, 594
BsaWI	WCCGGW	1 cut(s)	254
Bsc4I	CCNNNNNNNGG	2 cut(s)	242, 559
Bse118I	RCCGGY	2 cut(s)	155, 254
Bse1I	ACTGG	2 cut(s)	239, 564
Bse21I	CCTNAGG	1 cut(s)	174
BseDI	CCNNGG	2 cut(s)	132, 594
BseGI	GGATG	6 cut(s)	162, 184, 343, 451, 499, 569
BseLI	CCNNNNNNNGG	2 cut(s)	242, 559
BseMII	CTCAG	2 cut(s)	165, 427
BseNI	ACTGG	2 cut(s)	239, 564
BseSI	GKGCMC	1 cut(s)	441
BseXI	GCAGC	2 cut(s)	286, 293
Bsh1236I	CGCG	2 cut(s)	93, 190
Bsh1285I	CGRYCG	1 cut(s)	37
BshFI	GGCC	1 cut(s)	137
BshNI	GGYRCC	1 cut(s)	158
BshTI	ACCGGT	1 cut(s)	254
BsiEI	CGRYCG	1 cut(s)	37
BsiHKAI	GWGCWC	2 cut(s)	204, 441
BsiHKCI	CYCGRG	1 cut(s)	131
BsiSI	CCGG	2 cut(s)	156, 255
BsiWI	CGTACG	1 cut(s)	45
BslFI	GGGAC	1 cut(s)	673
BslI	CCNNNNNNNGG	2 cut(s)	242, 559
BsmAI	GTCTC	2 cut(s)	66, 389
BsmBI	CGTCTC	1 cut(s)	66
BsmFI	GGGAC	1 cut(s)	673
BsmI	GAATGC	1 cut(s)	386
BsnI	GGCC	1 cut(s)	137
Bso31I	GGTCTC	1 cut(s)	389
BsoBI	CYCGRG	1 cut(s)	131
Bsp1286I	GDGCHC	2 cut(s)	204, 441
Bsp143I	GATC	9 cut(s)	21, 34, 169, 205, 232, 245, 424, 463, 615
BspACI	CCGC	3 cut(s)	276, 331, 563
BspANI	GGCC	1 cut(s)	137
BspCNI	CTCAG	2 cut(s)	166, 426
BspFNI	CGCG	2 cut(s)	93, 190
BspHI	TCATGA	1 cut(s)	580
BspLI	GGNNCC	3 cut(s)	160, 234, 630
BspPI	GGATC	4 cut(s)	164, 227, 240, 253
BspT107I	GGYRCC	1 cut(s)	158
BspTNI	GGTCTC	1 cut(s)	389
BsrBI	CCGCTC	2 cut(s)	278, 333
BsrFI	RCCGGY	2 cut(s)	155, 254
BsrI	ACTGG	2 cut(s)	239, 564
BssAI	RCCGGY	2 cut(s)	155, 254
BssECI	CCNNGG	2 cut(s)	132, 594
BssMI	GATC	9 cut(s)	21, 34, 169, 205, 232, 245, 424, 463, 615
BssNI	GRCGYC	1 cut(s)	41
BssT1I	CCWWGG	1 cut(s)	594
Bst6I	CTCTTC	1 cut(s)	61
BstACI	GRCGYC	1 cut(s)	41
BstC8I	GCNNGC	3 cut(s)	149, 153, 304
BstDEI	CTNAG	2 cut(s)	174, 413
BstF5I	GGATG	6 cut(s)	162, 184, 343, 451, 499, 569
BstFNI	CGCG	2 cut(s)	93, 190
BstHHI	GCGC	2 cut(s)	93, 190
BstKTI	GATC	9 cut(s)	24, 37, 172, 208, 235, 248, 427, 466, 618
BstMAI	GTCTC	2 cut(s)	66, 389
BstMBI	GATC	9 cut(s)	21, 34, 169, 205, 232, 245, 424, 463, 615
BstMCI	CGRYCG	1 cut(s)	37
BstMWI	GCNNNNNNNGC	1 cut(s)	563
BstSLI	GKGCMC	1 cut(s)	441
BstUI	CGCG	2 cut(s)	93, 190
BstV1I	GCAGC	2 cut(s)	286, 293
BstX2I	RGATCY	2 cut(s)	232, 245
BstYI	RGATCY	2 cut(s)	232, 245
Bsu36I	CCTNAGG	1 cut(s)	174
BsuRI	GGCC	1 cut(s)	137
BtgZI	GCGATG	1 cut(s)	108
BtsCI	GGATG	6 cut(s)	162, 184, 343, 451, 499, 569
BtsI	GCAGTG	1 cut(s)	618
BtsIMutI	CAGTG	3 cut(s)	312, 557, 618
Cac8I	GCNNGC	3 cut(s)	149, 153, 304
CciI	TCATGA	1 cut(s)	580
CfoI	GCGC	2 cut(s)	93, 190
Cfr10I	RCCGGY	2 cut(s)	155, 254
Cfr13I	GGNCC	2 cut(s)	257, 628
CseI	GACGC	1 cut(s)	30
Csp6I	GTAC	3 cut(s)	46, 328, 451
CspAI	ACCGGT	1 cut(s)	254
CspCI	CAANNNNNGTGG	1 cut(s)	678
CviAII	CATG	3 cut(s)	371, 554, 581
CviJI	RGCY	6 cut(s)	53, 137, 289, 306, 412, 486
CviKI_1	RGCY	6 cut(s)	53, 137, 289, 306, 412, 486
CviQI	GTAC	3 cut(s)	46, 328, 451
DdeI	CTNAG	2 cut(s)	174, 413
DpnI	GATC	9 cut(s)	23, 36, 171, 207, 234, 247, 426, 465, 617
DpnII	GATC	9 cut(s)	21, 34, 169, 205, 232, 245, 424, 463, 615
DraI	TTTAAA	1 cut(s)	543
DrdI	GACNNNNNNGTC	1 cut(s)	74
DseDI	GACNNNNNNGTC	1 cut(s)	74
Eam1104I	CTCTTC	1 cut(s)	61
EarI	CTCTTC	1 cut(s)	61
Eco130I	CCWWGG	1 cut(s)	594
Eco31I	GGTCTC	1 cut(s)	389
Eco47I	GGWCC	2 cut(s)	257, 628
Eco81I	CCTNAGG	1 cut(s)	174
Eco88I	CYCGRG	1 cut(s)	131
EcoO109I	RGGNCCY	1 cut(s)	628
EcoT14I	CCWWGG	1 cut(s)	594
EcoT22I	ATGCAT	1 cut(s)	388
ErhI	CCWWGG	1 cut(s)	594
Esp3I	CGTCTC	1 cut(s)	66
FaeI	CATG	3 cut(s)	374, 557, 584
FalI	AAGNNNNNCTT	2 cut(s)	135, 167
FaqI	GGGAC	1 cut(s)	673
FatI	CATG	3 cut(s)	370, 553, 580
FbaI	TGATCA	1 cut(s)	615
Fnu4HI	GCNGC	3 cut(s)	300, 307, 564
FokI	GGATG	6 cut(s)	149, 191, 350, 458, 506, 556
Fsp4HI	GCNGC	3 cut(s)	300, 307, 564
GlaI	GCGC	2 cut(s)	92, 189
GluI	GCNGC	3 cut(s)	300, 307, 564
GsuI	CTGGAG	1 cut(s)	222
HaeIII	GGCC	1 cut(s)	137
HapII	CCGG	2 cut(s)	156, 255
HgaI	GACGC	1 cut(s)	30
HhaI	GCGC	2 cut(s)	93, 190
Hin1I	GRCGYC	1 cut(s)	41
Hin1II	CATG	3 cut(s)	374, 557, 584
Hin6I	GCGC	2 cut(s)	91, 188
HinP1I	GCGC	2 cut(s)	91, 188
HinfI	GANTC	1 cut(s)	195
HpaII	CCGG	2 cut(s)	156, 255
HphI	GGTGA	3 cut(s)	110, 373, 434
Hpy166II	GTNNAC	1 cut(s)	439
Hpy188I	TCNGA	4 cut(s)	245, 284, 337, 416
Hpy188III	TCNNGA	6 cut(s)	19, 65, 79, 173, 209, 581
Hpy8I	GTNNAC	1 cut(s)	439
Hpy99I	CGWCG	4 cut(s)	46, 128, 195, 299
HpyAV	CCTTC	2 cut(s)	137, 209
HpyCH4V	TGCA	7 cut(s)	264, 309, 370, 386, 439, 557, 700
HpyF10VI	GCNNNNNNNGC	1 cut(s)	563
HpyF3I	CTNAG	2 cut(s)	174, 413
Hsp92I	GRCGYC	1 cut(s)	41
Hsp92II	CATG	3 cut(s)	374, 557, 584
HspAI	GCGC	2 cut(s)	91, 188
Ksp22I	TGATCA	1 cut(s)	615
Kzo9I	GATC	9 cut(s)	21, 34, 169, 205, 232, 245, 424, 463, 615
LmnI	GCTCC	1 cut(s)	21
Lsp1109I	GCAGC	2 cut(s)	286, 293
LweI	GCATC	1 cut(s)	318
MalI	GATC	9 cut(s)	23, 36, 171, 207, 234, 247, 426, 465, 617
MbiI	CCGCTC	2 cut(s)	278, 333
MboI	GATC	9 cut(s)	21, 34, 169, 205, 232, 245, 424, 463, 615
MboII	GAAGA	4 cut(s)	48, 224, 418, 569
MflI	RGATCY	2 cut(s)	232, 245
MhlI	GDGCHC	2 cut(s)	204, 441
MluCI	AATT	6 cut(s)	102, 226, 379, 545, 589, 639
MmeI	TCCRAC	1 cut(s)	223
MnlI	CCTC	9 cut(s)	64, 127, 131, 169, 176, 246, 337, 484, 619
Mph1103I	ATGCAT	1 cut(s)	388
MseI	TTAA	1 cut(s)	542
MslI	CAYNNNNRTG	2 cut(s)	444, 579
MspI	CCGG	2 cut(s)	156, 255
Mva1269I	GAATGC	1 cut(s)	386
MvnI	CGCG	2 cut(s)	93, 190
MwoI	GCNNNNNNNGC	1 cut(s)	563
NdeII	GATC	9 cut(s)	21, 34, 169, 205, 232, 245, 424, 463, 615
NlaIII	CATG	3 cut(s)	374, 557, 584
NlaIV	GGNNCC	3 cut(s)	160, 234, 630
NsiI	ATGCAT	1 cut(s)	388
PagI	TCATGA	1 cut(s)	580
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PctI	GAATGC	1 cut(s)	386
PfeI	GAWTC	1 cut(s)	195
Pfl23II	CGTACG	1 cut(s)	45
PflMI	CCANNNNNTGG	1 cut(s)	559
PinAI	ACCGGT	1 cut(s)	254
PkrI	GCNGC	3 cut(s)	301, 308, 565
Ple19I	CGATCG	1 cut(s)	37
PpuMI	RGGWCCY	1 cut(s)	628
Psp5II	RGGWCCY	1 cut(s)	628
PspLI	CGTACG	1 cut(s)	45
PspN4I	GGNNCC	3 cut(s)	160, 234, 630
PspPI	GGNCC	2 cut(s)	257, 628
PspPPI	RGGWCCY	1 cut(s)	628
PsuI	RGATCY	2 cut(s)	232, 245
PvuI	CGATCG	1 cut(s)	37
RsaI	GTAC	3 cut(s)	47, 329, 452
RsaNI	GTAC	3 cut(s)	46, 328, 451
RseI	CAYNNNNRTG	2 cut(s)	444, 579
SaqAI	TTAA	1 cut(s)	542
SatI	GCNGC	3 cut(s)	300, 307, 564
Sau3AI	GATC	9 cut(s)	21, 34, 169, 205, 232, 245, 424, 463, 615
Sau96I	GGNCC	2 cut(s)	257, 628
ScaI	AGTACT	1 cut(s)	452
SduI	GDGCHC	2 cut(s)	204, 441
SetI	ASST	9 cut(s)	33, 220, 272, 291, 363, 414, 438, 488, 525
SfaNI	GCATC	1 cut(s)	318
SinI	GGWCC	2 cut(s)	257, 628
SmiMI	CAYNNNNRTG	2 cut(s)	444, 579
Sse9I	AATT	6 cut(s)	102, 226, 379, 545, 589, 639
SsiI	CCGC	3 cut(s)	276, 331, 563
StyI	CCWWGG	1 cut(s)	594
TaqI	TCGA	6 cut(s)	33, 78, 123, 168, 198, 355
TasI	AATT	6 cut(s)	102, 226, 379, 545, 589, 639
TatI	WGTACW	1 cut(s)	450
TauI	GCSGC	1 cut(s)	566
TfiI	GAWTC	1 cut(s)	195
Tru1I	TTAA	1 cut(s)	542
Tru9I	TTAA	1 cut(s)	542
TscAI	CASTG	3 cut(s)	319, 564, 618
TseI	GCWGC	2 cut(s)	299, 306
TspDTI	ATGAA	8 cut(s)	156, 195, 379, 468, 533, 569, 600, 639
TspRI	CASTG	3 cut(s)	319, 564, 618
Van91I	CCANNNNNTGG	1 cut(s)	559
VneI	GTGCAC	1 cut(s)	437
VpaK11BI	GGWCC	2 cut(s)	257, 628
XapI	RAATTY	3 cut(s)	226, 589, 639
ZrmI	AGTACT	1 cut(s)	452
Zsp2I	ATGCAT	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.