Rmu_sc0000712.1_g000024

Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000712.1
Physical Location & Seq
Forward (+)
115368 .. 120433
5066 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000712.1_g000024.1.cds

Sequence Viewer

Length: 990 bp
atgaggcttcagtcaccagttgacttaagtaggcacgatatgaaaggttgtggaattgatggtcgtaggtcagggaaatcgtggctgaagctgaggtggcgtctttgcagctttacggggcgtgacacgcttggcgaacccgaggccgatgaaggcgtgcttaccggtgccatcctcgatcctgaggatgaagtagcgccacgattcgagcacggtcttgacggaggtcgctggaatttggatcctccagtcagatctctcaccggtcctagcacgacgttttccgctctcggcgagcttctcgtcgctgctggctgcatcactgactttgatgagtaccgctcggagattcctgttcccaagtccatattagacatttgtgccctttggaaacttaaagatgatgagagaggatgtggaggcaaacaatcgaaaggtgaaagtgtatgtaggaattatacattcattgagaccagatggaagaagctcagagttggtgatcttgtcaaggtgcacaaggatgagtactttcttactgatctgcttttgctttcatcaagctatgaggatggcattttctatgtggaaactatgaaccttgatggagaaacaaatttaaaattgaaccattcactagaggcgacatcccatcttcatgatgaaaattccttggaaagatttagggtagagatcaagtttcttgaaatggatgctggcaacctgacgtacaaccatgtcgcagttacagtccacaataatttgcaacagtctcaccaaatgttgcgaacgagcttccgagctcttcacaccaaatgcggcggcgtagatgcagcaagcgtgctccttgaaggtgcgaatggaggcggggcggtcgacggtccagagcttcacggtgtcatcccacgaggaggtgaacaaccagtcgcggcgagtgggattgtagtcggcggagctgacctcacgcatgtgctcgtggagggagaggagtag

Protein Analysis

329

Amino Acids

36.13

Weight (kDa)

5.21

Isoelectric Point (pI)

41.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 167
AccBSI CCGCTC 2 cut(s) 287, 342
AccI GTMKAC 1 cut(s) 873
AccII CGCG 1 cut(s) 926
AciI CCGC 8 cut(s) 285, 340, 816, 819, 864, 869, 926, 948
AclWI GGATC 3 cut(s) 173, 236, 249
AcsI RAATTY 3 cut(s) 235, 613, 664
AcuI CTGAAG 1 cut(s) 107
AcyI GRCGYC 1 cut(s) 100
AfaI GTAC 3 cut(s) 338, 527, 728
AfiI CCNNNNNNNGG 1 cut(s) 908
AflII CTTAAG 1 cut(s) 25
AgeI ACCGGT 2 cut(s) 164, 263
AgsI TTSAA 3 cut(s) 625, 704, 848
AleI CACNNNNGTG 1 cut(s) 965
AluBI AGCT 9 cut(s) 91, 111, 298, 487, 561, 792, 800, 886, 953
AluI AGCT 9 cut(s) 91, 111, 298, 487, 561, 792, 800, 886, 953
Alw21I GWGCWC 5 cut(s) 213, 516, 802, 843, 972
Alw26I GTCTC 2 cut(s) 464, 774
Alw44I GTGCAC 1 cut(s) 512
AlwI GGATC 3 cut(s) 173, 236, 249
Ama87I CYCGRG 1 cut(s) 140
AoxI GGCC 1 cut(s) 144
ApaLI GTGCAC 1 cut(s) 512
ApeKI GCWGC 4 cut(s) 108, 308, 315, 830
ApoI RAATTY 3 cut(s) 235, 613, 664
AsiGI ACCGGT 2 cut(s) 164, 263
AspLEI GCGC 1 cut(s) 199
AspS9I GGNCC 2 cut(s) 266, 878
AsuHPI GGTGA 6 cut(s) 6, 253, 449, 509, 764, 923
AvaI CYCGRG 1 cut(s) 140
AvaII GGWCC 2 cut(s) 266, 878
AxyI CCTNAGG 1 cut(s) 183
BaeGI GKGCMC 2 cut(s) 385, 516
BamHI GGATCC 1 cut(s) 241
BanI GGYRCC 1 cut(s) 167
BanII GRGCYC 1 cut(s) 802
BauI CACGAG 2 cut(s) 903, 971
Bbv12I GWGCWC 5 cut(s) 213, 516, 802, 843, 972
BbvCI CCTCAGC 1 cut(s) 92
BbvI GCAGC 4 cut(s) 120, 295, 302, 842
BccI CCATC 6 cut(s) 53, 179, 471, 563, 596, 657
BcoDI GTCTC 2 cut(s) 464, 774
BfaI CTAG 2 cut(s) 270, 635
BfoI RGCGCY 1 cut(s) 200
BfrI CTTAAG 1 cut(s) 25
BglII AGATCT 1 cut(s) 254
BisI GCNGC 7 cut(s) 109, 309, 316, 817, 820, 831, 927
BlsI GCNGC 7 cut(s) 110, 310, 317, 818, 821, 832, 928
BmcAI AGTACT 1 cut(s) 527
Bme18I GGWCC 2 cut(s) 266, 878
BmeT110I CYCGRG 1 cut(s) 140
BmgT120I GGNCC 2 cut(s) 266, 878
BmiI GGNNCC 2 cut(s) 169, 243
BmsI GCATC 3 cut(s) 327, 700, 817
BoxI GACNNNNGTC 1 cut(s) 225
BplI GAGNNNNNCTC 4 cut(s) 326, 358, 942, 974
BpmI CTGGAG 1 cut(s) 231
Bpu10I CCTNAGC 1 cut(s) 92
BsaHI GRCGYC 1 cut(s) 100
BsaI GGTCTC 1 cut(s) 464
BsaJI CCNNGG 2 cut(s) 141, 669
BsaWI WCCGGW 2 cut(s) 164, 263
Bsc4I CCNNNNNNNGG 1 cut(s) 908
Bse118I RCCGGY 2 cut(s) 164, 263
Bse1I ACTGG 3 cut(s) 17, 248, 920
Bse21I CCTNAGG 1 cut(s) 183
BseDI CCNNGG 2 cut(s) 141, 669
BseGI GGATG 8 cut(s) 171, 193, 419, 526, 574, 644, 715, 897
BseLI CCNNNNNNNGG 1 cut(s) 908
BseMII CTCAG 3 cut(s) 83, 174, 502
BseNI ACTGG 3 cut(s) 17, 248, 920
BseRI GAGGAG 1 cut(s) 921
BseSI GKGCMC 2 cut(s) 385, 516
BseXI GCAGC 4 cut(s) 120, 295, 302, 842
Bsh1236I CGCG 1 cut(s) 926
Bsh1285I CGRYCG 1 cut(s) 873
BshFI GGCC 1 cut(s) 146
BshNI GGYRCC 1 cut(s) 167
BshTI ACCGGT 2 cut(s) 164, 263
BsiEI CGRYCG 1 cut(s) 873
BsiHKAI GWGCWC 5 cut(s) 213, 516, 802, 843, 972
BsiHKCI CYCGRG 1 cut(s) 140
BsiSI CCGG 2 cut(s) 165, 264
BslI CCNNNNNNNGG 1 cut(s) 908
BsmAI GTCTC 2 cut(s) 464, 774
BsnI GGCC 1 cut(s) 146
Bso31I GGTCTC 1 cut(s) 464
BsoBI CYCGRG 1 cut(s) 140
Bsp1286I GDGCHC 6 cut(s) 213, 385, 516, 802, 843, 972
Bsp143I GATC 6 cut(s) 178, 241, 254, 499, 538, 690
BspACI CCGC 8 cut(s) 285, 340, 816, 819, 864, 869, 926, 948
BspANI GGCC 1 cut(s) 146
BspCNI CTCAG 3 cut(s) 84, 175, 501
BspFNI CGCG 1 cut(s) 926
BspHI TCATGA 1 cut(s) 655
BspLI GGNNCC 2 cut(s) 169, 243
BspPI GGATC 3 cut(s) 173, 236, 249
BspQI GCTCTTC 1 cut(s) 807
BspT107I GGYRCC 1 cut(s) 167
BspTI CTTAAG 1 cut(s) 25
BspTNI GGTCTC 1 cut(s) 464
BsrBI CCGCTC 2 cut(s) 287, 342
BsrFI RCCGGY 2 cut(s) 164, 263
BsrI ACTGG 3 cut(s) 17, 248, 920
BssAI RCCGGY 2 cut(s) 164, 263
BssECI CCNNGG 2 cut(s) 141, 669
BssMI GATC 6 cut(s) 178, 241, 254, 499, 538, 690
BssNI GRCGYC 1 cut(s) 100
BssSI CACGAG 2 cut(s) 903, 971
BssT1I CCWWGG 1 cut(s) 669
Bst2BI CACGAG 2 cut(s) 903, 971
Bst4CI ACNGT 5 cut(s) 215, 748, 768, 878, 893
Bst6I CTCTTC 1 cut(s) 807
BstACI GRCGYC 1 cut(s) 100
BstAFI CTTAAG 1 cut(s) 25
BstC8I GCNNGC 6 cut(s) 158, 296, 313, 715, 835, 839
BstDEI CTNAG 3 cut(s) 92, 183, 488
BstF5I GGATG 8 cut(s) 171, 193, 419, 526, 574, 644, 715, 897
BstFNI CGCG 1 cut(s) 926
BstH2I RGCGCY 1 cut(s) 200
BstHHI GCGC 1 cut(s) 199
BstKTI GATC 6 cut(s) 181, 244, 257, 502, 541, 693
BstMAI GTCTC 2 cut(s) 464, 774
BstMBI GATC 6 cut(s) 178, 241, 254, 499, 538, 690
BstMCI CGRYCG 1 cut(s) 873
BstMWI GCNNNNNNNGC 2 cut(s) 97, 127
BstNSI RCATGY 1 cut(s) 968
BstPAI GACNNNNGTC 1 cut(s) 225
BstSLI GKGCMC 2 cut(s) 385, 516
BstUI CGCG 1 cut(s) 926
BstV1I GCAGC 4 cut(s) 120, 295, 302, 842
BstX2I RGATCY 2 cut(s) 241, 254
BstYI RGATCY 2 cut(s) 241, 254
Bsu36I CCTNAGG 1 cut(s) 183
BsuRI GGCC 1 cut(s) 146
BtsCI GGATG 8 cut(s) 171, 193, 419, 526, 574, 644, 715, 897
BtsIMutI CAGTG 1 cut(s) 321
Cac8I GCNNGC 6 cut(s) 158, 296, 313, 715, 835, 839
CciI TCATGA 1 cut(s) 655
CfoI GCGC 1 cut(s) 199
Cfr10I RCCGGY 2 cut(s) 164, 263
Cfr13I GGNCC 2 cut(s) 266, 878
CseI GACGC 1 cut(s) 89
Csp6I GTAC 3 cut(s) 337, 526, 727
CspAI ACCGGT 2 cut(s) 164, 263
CviAII CATG 3 cut(s) 656, 734, 965
CviQI GTAC 3 cut(s) 337, 526, 727
DdeI CTNAG 3 cut(s) 92, 183, 488
DpnI GATC 6 cut(s) 180, 243, 256, 501, 540, 692
DpnII GATC 6 cut(s) 178, 241, 254, 499, 538, 690
DraI TTTAAA 1 cut(s) 618
Eam1104I CTCTTC 1 cut(s) 807
EarI CTCTTC 1 cut(s) 807
EciI GGCGGA 1 cut(s) 963
Ecl136II GAGCTC 1 cut(s) 800
Eco130I CCWWGG 1 cut(s) 669
Eco24I GRGCYC 1 cut(s) 802
Eco31I GGTCTC 1 cut(s) 464
Eco47I GGWCC 2 cut(s) 266, 878
Eco53kI GAGCTC 1 cut(s) 800
Eco57I CTGAAG 1 cut(s) 107
Eco81I CCTNAGG 1 cut(s) 183
Eco88I CYCGRG 1 cut(s) 140
EcoICRI GAGCTC 1 cut(s) 800
EcoT14I CCWWGG 1 cut(s) 669
EcoT38I GRGCYC 1 cut(s) 802
ErhI CCWWGG 1 cut(s) 669
FaeI CATG 3 cut(s) 659, 737, 968
FalI AAGNNNNNCTT 2 cut(s) 144, 176
FatI CATG 3 cut(s) 655, 733, 964
FauI CCCGC 1 cut(s) 857
FblI GTMKAC 1 cut(s) 873
Fnu4HI GCNGC 7 cut(s) 109, 309, 316, 817, 820, 831, 927
FokI GGATG 8 cut(s) 158, 200, 426, 533, 581, 631, 722, 884
FriOI GRGCYC 1 cut(s) 802
Fsp4HI GCNGC 7 cut(s) 109, 309, 316, 817, 820, 831, 927
FspBI CTAG 2 cut(s) 270, 635
GlaI GCGC 1 cut(s) 198
GluI GCNGC 7 cut(s) 109, 309, 316, 817, 820, 831, 927
GsuI CTGGAG 1 cut(s) 231
HaeII RGCGCY 1 cut(s) 200
HaeIII GGCC 1 cut(s) 146
HapII CCGG 2 cut(s) 165, 264
HgaI GACGC 1 cut(s) 89
HhaI GCGC 1 cut(s) 199
Hin1I GRCGYC 1 cut(s) 100
Hin1II CATG 3 cut(s) 659, 737, 968
Hin6I GCGC 1 cut(s) 197
HinP1I GCGC 1 cut(s) 197
HincII GTYRAC 2 cut(s) 22, 874
HindII GTYRAC 2 cut(s) 22, 874
HinfI GANTC 2 cut(s) 204, 349
HpaII CCGG 2 cut(s) 165, 264
HphI GGTGA 6 cut(s) 6, 253, 449, 509, 764, 923
Hpy166II GTNNAC 5 cut(s) 22, 514, 751, 874, 914
Hpy188I TCNGA 4 cut(s) 254, 346, 491, 797
Hpy188III TCNNGA 5 cut(s) 182, 218, 656, 701, 881
Hpy8I GTNNAC 5 cut(s) 22, 514, 751, 874, 914
Hpy99I CGWCG 3 cut(s) 280, 308, 878
HpyAV CCTTC 2 cut(s) 146, 842
HpyCH4III ACNGT 5 cut(s) 215, 748, 768, 878, 893
HpyCH4IV ACGT 2 cut(s) 278, 725
HpyCH4V TGCA 5 cut(s) 108, 318, 514, 763, 830
HpyF10VI GCNNNNNNNGC 2 cut(s) 97, 127
HpyF3I CTNAG 3 cut(s) 92, 183, 488
HpySE526I ACGT 2 cut(s) 278, 725
Hsp92I GRCGYC 1 cut(s) 100
Hsp92II CATG 3 cut(s) 659, 737, 968
HspAI GCGC 1 cut(s) 197
Kzo9I GATC 6 cut(s) 178, 241, 254, 499, 538, 690
LguI GCTCTTC 1 cut(s) 807
LmnI GCTCC 2 cut(s) 846, 950
Lsp1109I GCAGC 4 cut(s) 120, 295, 302, 842
LweI GCATC 3 cut(s) 327, 700, 817
MaeI CTAG 2 cut(s) 270, 635
MaeII ACGT 2 cut(s) 278, 725
MaeIII GTNAC 3 cut(s) 12, 122, 742
MalI GATC 6 cut(s) 180, 243, 256, 501, 540, 692
MbiI CCGCTC 2 cut(s) 287, 342
MboI GATC 6 cut(s) 178, 241, 254, 499, 538, 690
MboII GAAGA 3 cut(s) 493, 644, 794
MflI RGATCY 2 cut(s) 241, 254
MhlI GDGCHC 6 cut(s) 213, 385, 516, 802, 843, 972
MluCI AATT 7 cut(s) 54, 235, 454, 613, 620, 664, 757
MseI TTAA 3 cut(s) 26, 396, 617
MslI CAYNNNNRTG 3 cut(s) 519, 654, 965
MspCI CTTAAG 1 cut(s) 25
MspI CCGG 2 cut(s) 165, 264
MvnI CGCG 1 cut(s) 926
MwoI GCNNNNNNNGC 2 cut(s) 97, 127
NdeII GATC 6 cut(s) 178, 241, 254, 499, 538, 690
NlaIII CATG 3 cut(s) 659, 737, 968
NlaIV GGNNCC 2 cut(s) 169, 243
NmeAIII GCCGAG 1 cut(s) 270
NmuCI GTSAC 2 cut(s) 12, 122
NspI RCATGY 1 cut(s) 968
OliI CACNNNNGTG 1 cut(s) 965
PagI TCATGA 1 cut(s) 655
PciSI GCTCTTC 1 cut(s) 807
PfeI GAWTC 2 cut(s) 204, 349
PinAI ACCGGT 2 cut(s) 164, 263
PkrI GCNGC 7 cut(s) 110, 310, 317, 818, 821, 832, 928
PshAI GACNNNNGTC 1 cut(s) 225
Psp124BI GAGCTC 1 cut(s) 802
PspN4I GGNNCC 2 cut(s) 169, 243
PspPI GGNCC 2 cut(s) 266, 878
PsuI RGATCY 2 cut(s) 241, 254
RsaI GTAC 3 cut(s) 338, 527, 728
RsaNI GTAC 3 cut(s) 337, 526, 727
RseI CAYNNNNRTG 3 cut(s) 519, 654, 965
SacI GAGCTC 1 cut(s) 802
SalI GTCGAC 1 cut(s) 872
SapI GCTCTTC 1 cut(s) 807
SaqAI TTAA 3 cut(s) 26, 396, 617
SatI GCNGC 7 cut(s) 109, 309, 316, 817, 820, 831, 927
Sau3AI GATC 6 cut(s) 178, 241, 254, 499, 538, 690
Sau96I GGNCC 2 cut(s) 266, 878
ScaI AGTACT 1 cut(s) 527
SduI GDGCHC 6 cut(s) 213, 385, 516, 802, 843, 972
SfaNI GCATC 3 cut(s) 327, 700, 817
SinI GGWCC 2 cut(s) 266, 878
SmiMI CAYNNNNRTG 3 cut(s) 519, 654, 965
SmlI CTYRAG 1 cut(s) 25
SmoI CTYRAG 1 cut(s) 25
Sse9I AATT 7 cut(s) 54, 235, 454, 613, 620, 664, 757
SsiI CCGC 8 cut(s) 285, 340, 816, 819, 864, 869, 926, 948
SspMI CTAG 2 cut(s) 270, 635
SstI GAGCTC 1 cut(s) 802
StyI CCWWGG 1 cut(s) 669
TaaI ACNGT 5 cut(s) 215, 748, 768, 878, 893
TaiI ACGT 2 cut(s) 281, 728
TaqI TCGA 4 cut(s) 177, 207, 431, 873
TasI AATT 7 cut(s) 54, 235, 454, 613, 620, 664, 757
TatI WGTACW 1 cut(s) 525
TauI GCSGC 3 cut(s) 819, 822, 929
TfiI GAWTC 2 cut(s) 204, 349
Tru1I TTAA 3 cut(s) 26, 396, 617
Tru9I TTAA 3 cut(s) 26, 396, 617
TscAI CASTG 1 cut(s) 328
TseFI GTSAC 2 cut(s) 12, 122
TseI GCWGC 4 cut(s) 108, 308, 315, 830
Tsp45I GTSAC 2 cut(s) 12, 122
TspDTI ATGAA 8 cut(s) 56, 165, 204, 454, 543, 608, 644, 675
TspGWI ACGGA 1 cut(s) 237
TspRI CASTG 1 cut(s) 328
Vha464I CTTAAG 1 cut(s) 25
VneI GTGCAC 1 cut(s) 512
VpaK11BI GGWCC 2 cut(s) 266, 878
XapI RAATTY 3 cut(s) 235, 613, 664
XceI RCATGY 1 cut(s) 968
XmiI GTMKAC 1 cut(s) 873
XspI CTAG 2 cut(s) 270, 635
ZrmI AGTACT 1 cut(s) 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.