Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001128

Physical Location & Seq

Genomic Coordinates Reverse (-)

4549232 .. 4560278

Gene Structure 11047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54734

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGTTTCCCGTTGCAGAGGAGGCTGACGAAGAGGGATGGCTGGAGTTCCGGGTTGACGGTGGGCAGTTGGTTAGGGAGCGGGCTAGACTTGAGCAGCATGAAATTGAAGTTGAGGAGGAAGCGAGAGAGGAAGAGATTCAGACTGATGAGATTGAGCCGCTGCAGTTGAGGAATGTGCAATTGGCAGAGGAACTTGCAAGAATCAAAAGCAAAGCTGGCAACTGCCGAAGAAAAACTGGGTGTGGATTCCACAGCGGTTCCGGCTGGACCTCGTTCTCAGAGGAAAAGCTGATGCTGCATAGGCAAAAACCTGATATGGCTTCTGCCACCTCTAGTAAATGGTTGCCCCTTCACACTCTTGCCGTATCAGGAGAATATTACATTATGCACGCTTTATCAAAACATGAAGCTGATATTAATGCTGCGGATAAGGATGATTGGACTGTTCTTGACAAGGCAATTATCGGTAAAAACCAGGCCATTACAGACTATCTTCTCAGAGATTCGGCTAATCCATTTGTTCGTGATAAAGGGGTTGGAAGTTTATATATGTATATATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Ank_2 Ank_4 Ank_5 RRM_1

Protein Analysis

187

Amino Acids

21.34

Weight (kDa)

4.98

Isoelectric Point (pI)

50.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	102 - 175	6e-06	Ankyrin repeats (3 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66055 AT5G66055
fragaria_vesca	FvH4_1g10990 FvH4_1g10990
malus_domestica	MD15G1236900.v1.1
prunus_persica	Prupe.7G175600_v2.0.a1
pyrus_communis	pycom15g21070
rosa_chinensis	RchiOBHm_Chr1g0316921 RchiOBHm_Chr1g0316981 RchiOBHm_Chr2g0098251 RchiOBHm_Chr2g0145411 RchiOBHm_Chr4g0390291 RchiOBHm_Chr5g0073551
rosa_laevigata	RLG00000001656 RLG00000016779 RLG00000027817 RLG00000030637 RLG00000032089
rosa_multiflora	Rmu_co8173478.1_g000001 Rmu_sc0000104.1_g000031 Rmu_sc0000712.1_g000024 Rmu_sc0001298.1_g000058 Rmu_sc0002048.1_g000015 Rmu_sc0002398.1_g000019 Rmu_sc0004138.1_g000005 Rmu_sc0007472.1_g000006 Rmu_sc0009922.1_g000006
rosa_roxburghii	Rroxscaffold_2G00094620 Rroxscaffold_2G00144120
rosa_rugosa	Rorug02G0071600 Rorug02G0547800 Rorug04G0008500 Rorug04G0008600 Rorug04G0008600 Rorug04G0208000 Rorug05G0455100.1
rosa_samantha	Rh1AG024600 Rh1AG024700 Rh1CG022000 Rh1CG022900 Rh1DG021700 Rh2AG118600 Rh2BG121700 Rh2BG300700 Rh2BG456300 Rh2CG123300 Rh2CG279400 Rh2DG123300 Rh2DG466200 Rh4AG245100 Rh4BG023700 Rh4BG025500 Rh4BG250300 Rh4DG100600 Rh5DG257900 Rh6AG184700
rosa_wichuraiana	Rw1G001670 Rw2G009310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	79
AciI	CCGC	4 cut(s)	79, 158, 255, 425
AgsI	TTSAA	1 cut(s)	107
AjnI	CCWGG	1 cut(s)	474
AjuI	GAANNNNNNNTTGG	2 cut(s)	164, 196
AluBI	AGCT	3 cut(s)	215, 289, 410
AluI	AGCT	3 cut(s)	215, 289, 410
AoxI	GGCC	1 cut(s)	477
ApeKI	GCWGC	4 cut(s)	94, 160, 295, 422
AseI	ATTAAT	1 cut(s)	417
Asp700I	GAANNNNTTC	1 cut(s)	135
AspS9I	GGNCC	1 cut(s)	267
AsuC2I	CCSGG	1 cut(s)	50
AvaII	GGWCC	1 cut(s)	267
BbvI	GCAGC	4 cut(s)	106, 147, 282, 409
BccI	CCATC	1 cut(s)	30
BceAI	ACGGC	1 cut(s)	347
BciT130I	CCWGG	1 cut(s)	476
BcnI	CCSGG	1 cut(s)	50
BfaI	CTAG	2 cut(s)	84, 333
BfmI	CTRYAG	1 cut(s)	161
BisI	GCNGC	5 cut(s)	95, 158, 161, 296, 423
BlsI	GCNGC	5 cut(s)	96, 159, 162, 297, 424
Bme1390I	CCNGG	2 cut(s)	50, 476
Bme18I	GGWCC	1 cut(s)	267
BmgT120I	GGNCC	1 cut(s)	267
BmiI	GGNNCC	1 cut(s)	259
BmrFI	CCNGG	2 cut(s)	50, 476
BmrI	ACTGGG	1 cut(s)	246
BmsI	GCATC	1 cut(s)	282
BmuI	ACTGGG	1 cut(s)	246
BpmI	CTGGAG	1 cut(s)	62
BpuEI	CTTGAG	1 cut(s)	110
BpuMI	CCSGG	1 cut(s)	50
Bse1I	ACTGG	1 cut(s)	241
BseBI	CCWGG	1 cut(s)	476
BseGI	GGATG	2 cut(s)	41, 439
BseMII	CTCAG	2 cut(s)	291, 511
BseNI	ACTGG	1 cut(s)	241
BseRI	GAGGAG	2 cut(s)	32, 128
BseXI	GCAGC	4 cut(s)	106, 147, 282, 409
BshFI	GGCC	1 cut(s)	479
BsiSI	CCGG	2 cut(s)	49, 261
BsnI	GGCC	1 cut(s)	479
BspACI	CCGC	4 cut(s)	79, 158, 255, 425
BspANI	GGCC	1 cut(s)	479
BspCNI	CTCAG	2 cut(s)	290, 510
BspLI	GGNNCC	1 cut(s)	259
BspMAI	CTGCAG	1 cut(s)	165
BsrBI	CCGCTC	1 cut(s)	79
BsrI	ACTGG	1 cut(s)	241
Bst2UI	CCWGG	1 cut(s)	476
Bst4CI	ACNGT	2 cut(s)	59, 445
Bst6I	CTCTTC	2 cut(s)	24, 126
BstC8I	GCNNGC	3 cut(s)	81, 217, 390
BstDEI	CTNAG	2 cut(s)	277, 497
BstF5I	GGATG	2 cut(s)	41, 439
BstMWI	GCNNNNNNNGC	5 cut(s)	20, 216, 261, 295, 301
BstNI	CCWGG	1 cut(s)	476
BstSCI	CCNGG	2 cut(s)	48, 474
BstSFI	CTRYAG	1 cut(s)	161
BstV1I	GCAGC	4 cut(s)	106, 147, 282, 409
BsuRI	GGCC	1 cut(s)	479
BtsCI	GGATG	2 cut(s)	41, 439
Cac8I	GCNNGC	3 cut(s)	81, 217, 390
Cfr13I	GGNCC	1 cut(s)	267
CviAII	CATG	2 cut(s)	98, 404
DdeI	CTNAG	2 cut(s)	277, 497
Eam1104I	CTCTTC	2 cut(s)	24, 126
EarI	CTCTTC	2 cut(s)	24, 126
Eco47I	GGWCC	1 cut(s)	267
EcoRII	CCWGG	1 cut(s)	474
FaeI	CATG	2 cut(s)	101, 407
FatI	CATG	2 cut(s)	97, 403
FauI	CCCGC	1 cut(s)	72
Fnu4HI	GCNGC	5 cut(s)	95, 158, 161, 296, 423
FokI	GGATG	2 cut(s)	48, 446
Fsp4HI	GCNGC	5 cut(s)	95, 158, 161, 296, 423
FspBI	CTAG	2 cut(s)	84, 333
GluI	GCNGC	5 cut(s)	95, 158, 161, 296, 423
GsuI	CTGGAG	1 cut(s)	62
HaeIII	GGCC	1 cut(s)	479
HapII	CCGG	2 cut(s)	49, 261
Hin1II	CATG	2 cut(s)	101, 407
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HinfI	GANTC	4 cut(s)	136, 201, 246, 503
HpaII	CCGG	2 cut(s)	49, 261
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	3 cut(s)	141, 280, 500
Hpy188III	TCNNGA	3 cut(s)	369, 449, 524
Hpy8I	GTNNAC	1 cut(s)	55
HpyAV	CCTTC	1 cut(s)	359
HpyCH4III	ACNGT	2 cut(s)	59, 445
HpyCH4V	TGCA	6 cut(s)	14, 163, 178, 197, 298, 388
HpyF10VI	GCNNNNNNNGC	5 cut(s)	20, 216, 261, 295, 301
HpyF3I	CTNAG	2 cut(s)	277, 497
Hsp92II	CATG	2 cut(s)	101, 407
LmnI	GCTCC	1 cut(s)	76
Lsp1109I	GCAGC	4 cut(s)	106, 147, 282, 409
LweI	GCATC	1 cut(s)	282
MaeI	CTAG	2 cut(s)	84, 333
MbiI	CCGCTC	1 cut(s)	79
MboII	GAAGA	4 cut(s)	41, 143, 240, 485
MfeI	CAATTG	1 cut(s)	179
MluCI	AATT	3 cut(s)	102, 179, 459
MmeI	TCCRAC	1 cut(s)	517
MroXI	GAANNNNTTC	1 cut(s)	135
MseI	TTAA	1 cut(s)	417
MspA1I	CMGCKG	2 cut(s)	160, 255
MspI	CCGG	2 cut(s)	49, 261
MspR9I	CCNGG	2 cut(s)	50, 476
MunI	CAATTG	1 cut(s)	179
MvaI	CCWGG	1 cut(s)	476
MwoI	GCNNNNNNNGC	5 cut(s)	20, 216, 261, 295, 301
NciI	CCSGG	1 cut(s)	50
NlaIII	CATG	2 cut(s)	101, 407
NlaIV	GGNNCC	1 cut(s)	259
PdmI	GAANNNNTTC	1 cut(s)	135
PfeI	GAWTC	4 cut(s)	136, 201, 246, 503
PkrI	GCNGC	5 cut(s)	96, 159, 162, 297, 424
PshBI	ATTAAT	1 cut(s)	417
Psp6I	CCWGG	1 cut(s)	474
PspGI	CCWGG	1 cut(s)	474
PspN4I	GGNNCC	1 cut(s)	259
PspPI	GGNCC	1 cut(s)	267
PstI	CTGCAG	1 cut(s)	165
SaqAI	TTAA	1 cut(s)	417
SatI	GCNGC	5 cut(s)	95, 158, 161, 296, 423
Sau96I	GGNCC	1 cut(s)	267
ScrFI	CCNGG	2 cut(s)	50, 476
SetI	ASST	6 cut(s)	217, 272, 291, 313, 332, 412
SfaNI	GCATC	1 cut(s)	282
SfcI	CTRYAG	1 cut(s)	161
SinI	GGWCC	1 cut(s)	267
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	3 cut(s)	102, 179, 459
SsiI	CCGC	4 cut(s)	79, 158, 255, 425
SspI	AATATT	1 cut(s)	377
SspMI	CTAG	2 cut(s)	84, 333
StyD4I	CCNGG	2 cut(s)	48, 474
TaaI	ACNGT	2 cut(s)	59, 445
TasI	AATT	3 cut(s)	102, 179, 459
TauI	GCSGC	1 cut(s)	160
TfiI	GAWTC	4 cut(s)	136, 201, 246, 503
Tru1I	TTAA	1 cut(s)	417
Tru9I	TTAA	1 cut(s)	417
TseI	GCWGC	4 cut(s)	94, 160, 295, 422
TspDTI	ATGAA	2 cut(s)	114, 420
VpaK11BI	GGWCC	1 cut(s)	267
VspI	ATTAAT	1 cut(s)	417
XmnI	GAANNNNTTC	1 cut(s)	135
XspI	CTAG	2 cut(s)	84, 333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.